Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007305.1 Hibiscus syriacus cultivar Beakdansim tig00019458_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59631

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
658--753
30
3.2
30
81
0
111
28
19
40
11
1.86
1089--1126
15
2.5
15
86
4
58
26
13
2
57
1.49
4102--4258
65
2.4
65
85
6
210
29
21
17
31
1.96
8666--8761
44
2.2
43
87
5
131
27
23
21
27
1.99
8689--8764
23
3.4
22
78
7
91
26
25
22
26
2.00
10683--10730
8
5.8
8
77
18
53
14
0
31
54
1.41
11318--11454
65
2.1
65
91
2
222
27
22
18
32
1.97
11614--11644
16
1.9
16
93
0
53
19
32
25
22
1.97
11847--11903
15
3.7
15
77
9
69
21
33
28
17
1.96
14182--14668
85
5.7
85
83
2
591
36
20
17
26
1.94
14182--14668
170
2.9
169
86
3
672
36
20
17
26
1.94
15340--15628
38
7.6
38
86
6
376
46
4
6
43
1.48
17814--17874
23
2.7
23
86
0
95
31
24
27
16
1.96
18370--18449
2
40.0
2
100
0
160
50
0
0
50
1.00
22503--22535
13
2.5
13
95
0
57
42
24
9
24
1.83
22883--22948
23
2.9
23
86
0
96
30
24
27
18
1.98
26292--26323
2
16.0
2
100
0
64
50
0
0
50
1.00
28449--28496
20
2.5
19
83
9
62
25
14
4
56
1.56
31106--31143
19
2.0
19
94
0
67
18
10
5
65
1.41
32431--32467
3
12.3
3
88
11
58
29
0
0
70
0.88
32432--32475
12
3.6
13
88
8
58
29
0
2
68
1.02
32438--32479
19
2.2
19
87
8
59
33
0
2
64
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32535--32659
25
5.0
25
100
0
250
36
20
16
28
1.93
34842--34901
29
2.1
29
83
0
75
13
13
8
65
1.48
40584--40822
105
2.3
102
82
6
277
31
19
11
37
1.88
40768--40887
36
3.4
36
79
6
113
30
20
12
35
1.90
41135--41219
29
3.0
29
87
1
118
27
10
16
45
1.80
41345--41465
37
3.5
36
73
17
130
31
13
10
44
1.78
41292--41483
66
3.0
66
85
6
250
31
12
12
43
1.80
41981--42024
15
2.9
15
86
0
61
29
20
6
43
1.78
42557--42809
129
2.0
129
95
0
461
24
31
19
24
1.98
42609--43060
209
2.1
210
93
1
762
24
32
18
24
1.97
42609--43006
40
9.5
40
75
13
275
23
32
18
25
1.97
43218--43254
3
12.3
3
88
11
58
29
0
0
70
0.88
43219--43262
12
3.6
13
88
8
58
29
0
2
68
1.02
43225--43266
19
2.2
19
87
8
59
33
0
2
64
1.07
43322--43421
25
4.0
25
100
0
200
36
20
16
28
1.93
45596--45655
29
2.1
29
83
0
75
13
13
8
65
1.48
47501--47601
36
2.9
35
82
7
114
22
22
17
36
1.95
56479--56544
31
2.1
31
85
0
87
53
7
9
30
1.60
56932--56965
15
2.1
17
89
10
54
52
2
2
41
1.31
58296--58367
33
2.2
33
92
0
117
31
8
37
22
1.84

Tables:   1

The End!