genome.fa.s7306.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007306.1 Hibiscus syriacus cultivar Beakdansim tig00019461_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65890

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
345--428	21	4.0	21	95	0	141	30	25	19	25	1.98
16224--16276	24	2.2	24	93	0	88	26	33	16	22	1.96
19253--19301	21	2.3	20	83	10	62	79	2	18	0	0.83
19263--19306	18	2.5	17	88	7	61	79	0	18	2	0.83
19254--19291	12	3.2	12	85	11	51	78	2	18	0	0.86
22219--22301	37	2.3	34	75	17	85	31	15	12	40	1.84
22273--22402	67	2.0	66	83	4	163	35	16	10	38	1.82
22336--22616	99	2.8	100	81	5	316	33	16	11	38	1.84
22525--22936	67	6.3	66	87	4	591	27	16	14	41	1.87
22525--22962	132	3.3	131	88	3	603	28	16	14	40	1.87
23249--23892	139	4.6	139	87	1	907	29	29	17	23	1.97
24426--24464	20	2.0	20	89	0	60	15	10	48	25	1.76
25068--25092	4	6.2	4	100	0	50	24	0	0	76	0.80
25076--25636	225	2.5	221	81	10	627	24	15	14	45	1.84
25111--25636	110	4.6	111	82	8	564	24	15	15	44	1.86
27368--27458	21	4.3	21	75	15	80	18	68	1	12	1.27
27331--27458	57	2.2	57	85	0	175	17	67	0	13	1.27
27331--27441	51	2.2	51	85	9	147	18	66	0	13	1.30
27731--27758	2	14.0	2	100	0	56	50	0	0	50	1.00
29182--29213	16	2.0	16	100	0	64	25	6	25	43	1.77
35571--35607	15	2.3	16	86	13	58	45	5	13	35	1.66
35578--35607	15	2.0	15	100	0	60	46	6	13	33	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35804--35835	14	2.3	14	100	0	64	46	15	18	18	1.84
38666--38691	6	4.3	6	100	0	52	46	0	34	19	1.50
45636--45681	21	2.2	20	85	11	58	39	4	8	47	1.54
50645--50684	20	2.0	20	85	5	53	37	0	0	62	0.95
54844--54932	29	3.1	29	100	0	178	13	31	37	17	1.89
54954--55007	18	3.1	18	97	2	101	38	24	20	16	1.92
54990--55078	45	2.0	45	100	0	178	26	13	42	16	1.86
55053--55232	15	11.1	15	72	17	137	21	7	53	17	1.69
55040--55166	65	1.9	66	95	3	229	23	9	50	16	1.74
55055--55231	82	2.2	83	84	4	234	21	7	53	17	1.69
55043--55236	65	3.0	64	81	12	207	22	8	52	17	1.70
55118--55256	51	2.8	51	95	3	248	19	7	53	18	1.68
55331--55394	32	2.0	32	100	0	128	21	25	21	31	1.98
55704--55752	21	2.3	21	82	3	62	32	0	16	51	1.45
55729--55791	28	2.2	30	88	5	94	33	0	11	55	1.35
56596--56654	26	2.3	25	75	18	66	47	8	3	40	1.51
59525--59838	26	12.8	26	72	18	219	42	2	10	43	1.54
59522--59834	122	2.6	120	83	7	386	42	2	10	43	1.53
59470--59690	96	2.3	98	92	1	365	43	3	9	43	1.52
59729--59805	19	3.6	19	72	24	73	35	0	16	48	1.47
59703--59808	46	2.3	46	96	0	194	39	0	14	46	1.44
59729--59808	11	8.4	10	71	26	59	36	0	16	47	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61701--61787	43	2.0	45	86	8	126	45	12	0	41	1.42
61989--62045	4	14.0	4	75	10	53	1	33	0	64	1.04
61989--62045	24	2.3	25	93	3	98	1	33	0	64	1.04
62005--62046	17	2.5	17	88	3	59	0	35	0	64	0.94
62111--62162	25	2.1	25	92	0	86	28	32	9	28	1.89
62273--62332	23	2.6	23	100	0	120	23	6	45	25	1.77
62338--62446	29	3.8	29	98	1	211	22	29	31	16	1.96
62338--62446	57	1.9	58	98	1	211	22	29	31	16	1.96
62471--62539	15	4.9	15	70	20	58	13	31	30	24	1.93
62460--62630	41	4.1	41	75	14	179	16	31	28	23	1.96
62575--62685	55	2.0	55	100	0	222	16	34	21	27	1.95
62501--62769	139	1.9	139	98	0	520	17	31	26	24	1.97
62582--62667	27	3.1	27	62	15	68	16	37	22	24	1.93
62640--62771	41	3.2	41	66	19	119	16	31	28	23	1.96
62983--63300	44	7.4	41	72	13	187	24	17	6	51	1.69
63260--63332	36	2.0	36	82	10	87	24	16	12	46	1.81
64859--64900	18	2.3	18	100	0	84	45	0	0	54	0.99
64867--64906	18	2.2	18	90	0	62	50	0	0	50	1.00

Tables:   1

The End!