genome.fa.s7307.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007307.1 Hibiscus syriacus cultivar Beakdansim tig00019469_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104793

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2992--3088	40	2.4	40	92	0	158	50	12	13	23	1.75
5149--5180	2	16.0	2	100	0	64	50	0	0	50	1.00
11214--11294	36	2.2	36	91	0	135	35	34	17	12	1.87
11215--11279	20	3.5	20	65	16	57	36	33	15	13	1.87
19032--19167	60	2.3	60	83	7	177	36	20	3	38	1.71
20659--20729	24	3.0	24	75	17	76	14	15	19	50	1.77
23278--23356	23	3.5	22	87	6	113	46	17	16	18	1.84
29137--29175	16	2.6	15	88	8	53	35	25	5	33	1.78
29225--29269	23	2.0	23	100	0	90	28	26	17	26	1.98
33241--33318	38	2.1	38	97	0	147	32	26	15	25	1.95
35221--35283	29	2.2	28	80	11	74	53	14	14	17	1.72
35724--35798	29	2.5	30	82	4	98	38	10	32	18	1.85
35863--35952	40	2.3	39	77	11	103	50	1	1	47	1.15
52488--52531	3	14.0	3	82	17	54	31	0	0	68	0.90
52484--52531	16	3.0	16	79	11	62	29	0	0	70	0.87
52487--52530	10	4.2	10	83	11	61	29	0	0	70	0.88
56170--56229	31	2.0	31	83	9	79	15	16	11	56	1.67
59553--59620	22	3.0	22	97	2	127	26	27	26	19	1.99
59834--59892	30	2.0	30	89	0	91	35	22	3	38	1.71
60261--60433	67	2.6	67	85	4	215	17	27	27	27	1.98
62253--62350	35	2.7	37	90	3	155	33	16	13	36	1.87
62316--62625	105	2.9	105	85	3	365	31	15	12	40	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62777--62848	29	2.5	29	86	11	103	27	12	13	45	1.80
62808--62865	30	2.0	29	86	3	80	31	12	12	44	1.78
62827--62988	63	2.5	63	85	6	211	33	11	13	40	1.81
62878--63044	91	1.8	92	81	3	212	31	11	14	41	1.83
62960--63015	26	2.1	27	93	3	96	30	8	16	44	1.78
62804--63101	156	1.9	159	86	4	428	31	12	13	42	1.81
62895--63075	91	2.0	92	83	3	231	30	12	13	43	1.81
62976--63120	64	2.3	64	81	3	184	30	12	13	44	1.80
62991--63801	378	2.1	376	95	0	1460	28	17	12	40	1.86
64228--64324	28	3.4	28	83	12	108	25	16	13	44	1.84
64433--64676	84	2.9	84	91	2	382	26	30	18	25	1.98
64483--64616	40	3.2	40	68	12	117	25	30	17	26	1.98
64820--64862	3	13.0	3	81	18	50	32	0	0	67	0.91
64823--64861	10	4.1	10	87	12	64	30	0	0	69	0.89
64819--64861	21	2.1	20	87	12	61	30	0	0	69	0.88
68847--68883	18	2.0	20	89	10	60	72	5	10	10	1.25
78392--78547	78	2.0	78	98	0	303	38	10	25	25	1.88
81760--81802	18	2.4	18	92	0	77	32	0	27	39	1.57
89626--89669	22	2.0	22	100	0	88	36	31	18	13	1.90
92391--92444	23	2.3	23	90	0	81	33	16	20	29	1.95
94390--94429	11	3.6	11	100	0	80	37	0	35	27	1.57
98588--98625	3	12.7	3	100	0	76	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98810--99213	32	12.9	32	82	6	479	35	18	16	28	1.93
98810--99213	93	4.3	95	85	5	486	35	18	16	28	1.93
103147--103199	22	2.4	22	87	6	72	22	28	22	26	1.99
103518--103554	3	12.7	3	94	5	67	64	0	0	35	0.94
103770--103809	22	1.9	21	90	10	64	30	25	15	30	1.95
103792--104103	32	10.0	32	83	8	383	34	19	16	28	1.94
103793--104103	156	2.0	156	86	5	432	34	19	17	28	1.94
103793--104103	93	3.3	93	85	4	430	34	19	17	28	1.94

Tables:   1

The End!