Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007309.1 Hibiscus syriacus cultivar Beakdansim tig00019471_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85778

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
505--529
13
1.9
13
100
0
50
0
8
8
84
0.79
1587--1763
90
2.0
88
90
5
277
33
14
18
33
1.91
15962--15989
12
2.3
12
100
0
56
60
28
0
10
1.30
26834--26859
12
2.2
12
100
0
52
61
0
7
30
1.24
32278--32394
38
3.2
38
85
8
154
41
34
10
14
1.80
32279--32395
33
3.4
33
82
12
144
41
34
10
14
1.80
35211--35252
20
2.1
20
95
0
75
19
16
11
52
1.74
38915--38997
32
2.6
31
83
3
94
40
15
20
22
1.90
49703--49860
75
2.1
75
89
3
239
16
9
26
47
1.77
54712--54783
14
5.1
14
65
18
51
16
11
30
41
1.83
54705--54786
28
2.9
28
87
0
128
15
12
31
40
1.85
55053--55082
2
15.0
2
100
0
60
50
0
0
50
1.00
57623--57708
31
2.8
32
75
13
97
23
17
29
30
1.97
63785--63817
16
2.1
16
100
0
66
36
39
0
24
1.56
66858--66903
19
2.4
19
85
7
58
30
2
8
58
1.40
66856--66903
20
2.5
19
83
10
53
31
2
8
58
1.39
71292--71343
22
2.4
22
93
0
86
32
13
21
32
1.92
74062--74120
30
2.0
30
82
0
73
13
25
23
37
1.92
74059--74127
30
2.3
30
76
11
70
13
26
24
36
1.92
75823--75902
28
2.8
28
90
1
115
43
8
16
31
1.78
79378--79408
4
7.8
4
100
0
62
25
0
22
51
1.48
82845--82891
18
2.6
18
89
0
76
31
27
12
27
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
82826--82892
18
3.3
20
79
12
66
37
28
10
23
1.88
83546--83583
4
9.5
4
94
0
67
23
0
26
50
1.50

Tables:   1

The End!