genome.fa.s7313.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007313.1 Hibiscus syriacus cultivar Beakdansim tig00019483_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89716

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4868--4911	21	2.1	21	86	0	61	9	36	13	40	1.76
6017--6176	65	2.5	64	84	5	189	32	21	17	28	1.96
13254--13289	10	3.6	10	88	0	54	16	11	13	58	1.63
13489--13548	23	2.6	24	89	5	81	10	5	18	66	1.39
13502--13587	24	3.7	23	75	16	77	11	9	18	60	1.57
14575--14607	8	4.1	8	88	11	50	84	3	12	0	0.72
15550--15589	21	1.9	21	89	0	62	27	25	20	27	1.99
15995--16098	46	2.3	45	86	4	147	33	24	5	36	1.79
16095--16150	20	2.7	20	78	15	60	58	21	3	16	1.52
16195--16356	40	4.1	40	89	0	243	36	24	14	24	1.93
24356--24468	50	2.3	50	93	0	190	23	9	17	49	1.76
24469--24498	12	2.5	12	94	0	51	30	3	16	50	1.62
24435--24581	70	2.1	70	80	0	168	24	11	17	46	1.81
27080--27128	22	2.2	22	100	0	98	30	0	36	32	1.58
27120--27148	13	2.1	14	93	6	51	31	3	41	24	1.71
31942--31992	16	3.4	14	79	12	50	66	0	15	17	1.25
32189--32234	25	1.9	23	86	8	65	2	13	6	78	1.04
32437--32496	6	10.5	6	85	7	81	56	1	30	11	1.45
32425--32509	33	2.5	34	86	7	120	56	1	29	12	1.44
32425--32490	27	2.4	27	89	5	96	59	1	28	10	1.40
32655--32707	22	2.4	22	93	0	88	32	3	33	30	1.76
34096--34130	15	2.3	15	90	0	52	17	2	42	37	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34392--34421	14	2.1	14	100	0	60	23	13	13	50	1.77
35710--35765	26	2.2	26	93	0	94	33	1	19	44	1.61
37222--37280	21	2.8	21	72	12	57	55	0	0	44	0.99
37765--37941	36	4.9	36	79	10	200	43	5	10	40	1.62
37910--37956	20	2.2	20	88	11	67	40	4	10	44	1.59
37908--37966	21	2.7	23	82	15	79	40	5	11	42	1.64
37874--37988	57	2.0	58	84	6	153	45	4	9	40	1.57
37983--38028	22	2.2	21	77	11	51	41	4	6	47	1.49
38034--38100	16	4.2	16	80	14	52	31	0	1	67	1.00
38879--39068	37	5.3	36	80	10	194	43	6	10	38	1.66
38887--39068	35	5.1	35	80	12	167	42	6	10	40	1.65
38872--39108	72	3.3	71	83	8	268	43	5	10	40	1.63
38887--39093	37	5.9	32	77	14	137	42	5	11	41	1.64
39035--39102	32	2.2	31	84	7	84	44	2	10	42	1.53
39108--39165	22	2.5	22	86	5	62	37	3	8	50	1.50
39115--39165	22	2.2	22	89	6	75	35	1	9	52	1.46
39115--39182	24	3.0	24	78	6	61	36	2	7	52	1.44
39175--39231	3	20.0	3	79	16	68	36	0	0	63	0.95
39153--39230	29	2.7	28	75	16	79	34	1	1	62	1.11
39179--39230	27	1.9	26	88	7	77	36	0	0	63	0.95
49656--49690	15	2.3	15	90	0	52	37	42	2	17	1.64
52867--52995	35	3.6	35	81	6	141	41	6	10	41	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52867--52996	37	3.6	37	79	6	149	42	6	10	41	1.63
53028--53120	33	3.0	31	76	13	102	44	4	7	44	1.52
53081--53124	22	2.0	22	90	0	70	43	2	6	47	1.42
53060--53140	26	3.2	24	77	16	76	40	2	7	49	1.44
53102--53176	26	2.9	26	82	9	75	33	0	5	61	1.19
53139--53220	32	2.4	35	80	15	93	30	1	2	65	1.13
53140--53216	29	2.6	30	80	17	81	31	1	2	64	1.15
53140--53218	9	7.9	10	74	24	60	30	1	2	65	1.13
55867--55930	31	2.1	31	90	0	101	48	6	7	37	1.57
56318--56374	20	2.8	20	97	0	105	33	17	21	28	1.96
62249--62273	13	1.9	13	100	0	50	68	0	0	32	0.90
62294--62332	10	4.1	10	83	12	55	41	0	0	58	0.98
62297--62332	18	1.9	19	88	5	56	38	0	0	61	0.96
66891--66965	29	2.6	29	77	6	71	44	5	5	45	1.49
67047--67135	30	3.1	28	82	7	115	46	5	7	40	1.57
73804--73843	18	2.2	18	86	8	55	52	2	2	42	1.28
76105--76159	12	4.7	12	77	11	60	63	0	0	36	0.95
76106--76154	23	2.1	23	85	7	64	65	0	0	34	0.93
76696--77179	110	4.0	116	74	15	385	25	18	25	31	1.97
76696--76933	120	2.0	116	86	3	332	23	18	25	31	1.98
76756--77355	240	2.4	243	85	6	766	24	18	25	32	1.97
77314--77441	43	3.0	43	87	0	184	21	15	31	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81283--81322	5	8.0	5	82	0	53	67	0	0	32	0.91
81279--81325	10	4.8	10	86	2	69	72	0	0	27	0.85
81278--81327	15	3.3	15	82	0	73	74	0	0	26	0.83
81278--81346	30	2.3	30	85	5	86	73	0	2	23	0.96
81671--81714	23	1.9	23	85	0	61	52	0	6	40	1.28
81673--81750	27	3.1	27	78	17	78	61	0	3	34	1.14
81710--81764	25	2.3	24	79	11	60	74	0	1	23	0.91
83443--83475	12	2.6	13	95	4	59	60	0	21	18	1.36
83456--83823	182	2.0	182	100	0	736	33	13	16	35	1.88
85895--86042	49	3.1	49	62	16	121	32	11	20	35	1.88
85895--86163	97	2.8	93	86	6	387	32	10	21	35	1.88
88507--89051	237	2.3	243	82	5	626	28	18	19	33	1.95

Tables:   1

The End!