genome.fa.s7316.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007316.1 Hibiscus syriacus cultivar Beakdansim tig00019513_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47269

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
650--726	31	2.4	32	87	10	122	28	0	22	49	1.50
7435--7467	14	2.4	14	94	0	57	24	39	30	6	1.79
7523--7589	14	4.4	14	77	20	71	7	28	38	25	1.83
7527--7593	34	2.0	34	100	0	134	8	26	38	25	1.85
10552--10589	3	12.7	3	88	0	58	5	34	0	60	1.19
13170--13198	2	14.5	2	100	0	58	48	0	0	51	1.00
13440--13480	12	3.5	12	83	9	50	46	0	2	51	1.14
17097--17144	22	2.2	22	100	0	96	43	18	8	29	1.79
23743--23785	19	2.3	19	83	0	50	41	6	13	37	1.72
24132--24238	40	2.7	40	97	0	196	22	13	9	55	1.66
25192--25307	21	5.6	21	69	10	60	32	27	18	21	1.96
25295--25487	20	9.6	20	83	5	237	34	26	19	19	1.95
25866--25936	33	2.2	33	94	0	124	11	23	16	47	1.79
26017--26089	21	3.5	20	74	9	74	47	19	20	12	1.81
26077--26132	14	3.7	14	78	17	67	42	23	25	8	1.82
26070--26148	32	2.4	33	91	4	133	46	22	21	8	1.79
26144--26271	19	7.1	19	71	19	87	10	25	18	45	1.82
26166--26222	14	3.7	14	75	20	60	8	24	22	43	1.81
26149--26271	33	3.5	33	88	10	165	10	24	18	46	1.81
26207--26271	21	3.1	21	82	4	96	10	26	15	47	1.78
27953--28268	93	3.4	93	99	0	623	22	13	18	45	1.85
28384--28440	14	3.7	14	72	20	51	43	24	22	8	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28366--28456	33	2.7	33	89	1	128	45	26	18	9	1.81
28398--28456	19	3.4	18	71	22	54	45	27	18	8	1.78
28452--28624	19	9.6	19	76	12	159	10	20	23	45	1.81
28474--28530	14	3.7	14	75	20	51	10	22	22	43	1.84
28452--28624	33	4.8	38	80	8	168	10	20	23	45	1.81
30540--30573	14	2.4	14	95	0	59	35	0	20	44	1.52
30682--30780	20	5.4	19	82	12	127	46	17	22	14	1.83
30682--30798	54	2.2	53	95	3	209	44	17	23	13	1.85
30789--31021	19	12.9	19	81	14	298	14	22	16	45	1.84
30832--30886	14	3.6	14	73	21	56	10	23	20	45	1.82
30813--31063	33	7.2	33	73	16	222	13	21	17	47	1.82
30789--31054	91	3.0	90	88	6	400	14	21	17	46	1.83
33346--33370	12	2.1	12	100	0	50	0	28	0	72	0.86
34280--34508	20	11.4	20	85	1	235	19	17	25	37	1.94
34476--34573	21	4.8	20	75	10	81	21	19	21	37	1.94
34476--34574	42	2.4	43	77	11	100	21	19	22	37	1.94
42426--42490	25	2.5	27	85	5	80	33	41	9	15	1.79

Tables:   1

The End!