Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007317.1 Hibiscus syriacus cultivar Beakdansim tig00019516_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33297
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Found at i:3953 original size:39 final size:40
Alignment explanation
Indices: 3881--3968 Score: 128
Period size: 39 Copynumber: 2.2 Consensus size: 40
3871 TACGTTTAAT
3881 TCCATCACATTAAGAGCTGGATCAATGTCCCCTCGTATCA
1 TCCATCACATTAAGAGCTGGATCAATGTCCCCTCGTATCA
*
3921 TCCATCACA-TAAGAG-TTGATCAACT-TCACCCTCGTATCA
1 TCCATCACATTAAGAGCTGGATCAA-TGTC-CCCTCGTATCA
3960 TCCATCACA
1 TCCATCACA
3969 AGATGATTGG
Statistics
Matches: 45, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
38 9 0.20
39 27 0.60
40 9 0.20
ACGTcount: A:0.30, C:0.32, G:0.11, T:0.27
Consensus pattern (40 bp):
TCCATCACATTAAGAGCTGGATCAATGTCCCCTCGTATCA
Found at i:7054 original size:176 final size:177
Alignment explanation
Indices: 6742--7196 Score: 583
Period size: 177 Copynumber: 2.6 Consensus size: 177
6732 GATCCAAATT
* * * **
6742 AAAAATGTATCGATC-CACACGATATAACAGGTAAAACTATGACAAAACCATATTGAAATGATAA
1 AAAAATGTATCGATCACACACGATATAACAGGTAAAAATAT-ATAAAACCGTATCAAAATGATAA
** * * *
6806 ACCGGTAAAGCGGTACCGAATATATTTAAAGTGTCGGTACTTTAATATAAGGATCGACACTTCGT
65 ACCGGTAAAATGATACCGAATATATTAAAAGTGTCGATACTTTAATATAAGGATCGACACTTCGT
*
6871 TAATTTAAA-AG-AGACAGTTTTAGCGCCTATATAA-TGTCGATACTTTCA
130 GAATTTAAAGAGAAG-CAGTTTTAGCGCCTATA-AAGTGTCGATACTTT-A
* *
6919 AAAAATAT-TCGATCACA-ACGATATAACAGGTAAAAATATATAAAACTGGTATCAAAATGATGA
1 AAAAATGTATCGATCACACACGATATAACAGGTAAAAATATATAAAAC-CGTATCAAAATGAT-A
* * * * *
6982 AACCGGTAAAATGCTACCGGATATATTGAAAGTGTCGAAACTTT-ATATAAGGATCGACACTTTG
64 AACCGGTAAAATGATACCGAATATATTAAAAGTGTCGATACTTTAATATAAGGATCGACACTTCG
7046 TGAATTTAAAGAGAAGCAGTTTTAGCGCCTATAAAGTGTCGATACTTTA
129 TGAATTTAAAGAGAAGCAGTTTTAGCGCCTATAAAGTGTCGATACTTTA
* *
7095 AAAAATGTATCGATCAAACACGATATAACA---ATAAA-ATATAAAACCGTATCAAAATGATAAA
1 AAAAATGTATCGATCACACACGATATAACAGGTAAAAATATATAAAACCGTATCAAAATGATAAA
*
7156 CCGGTAAAATGATACC-TATATATTAAAAGTGTCGATACTTT
66 CCGGTAAAATGATACCGAATATATTAAAAGTGTCGATACTTT
7197 CGTAAGTACG
Statistics
Matches: 246, Mismatches: 24, Indels: 22
0.84 0.08 0.08
Matches are distributed among these distances:
171 22 0.09
172 18 0.07
173 13 0.05
174 9 0.04
175 10 0.04
176 75 0.30
177 86 0.35
178 13 0.05
ACGTcount: A:0.42, C:0.14, G:0.16, T:0.28
Consensus pattern (177 bp):
AAAAATGTATCGATCACACACGATATAACAGGTAAAAATATATAAAACCGTATCAAAATGATAAA
CCGGTAAAATGATACCGAATATATTAAAAGTGTCGATACTTTAATATAAGGATCGACACTTCGTG
AATTTAAAGAGAAGCAGTTTTAGCGCCTATAAAGTGTCGATACTTTA
Found at i:9408 original size:21 final size:21
Alignment explanation
Indices: 9382--9422 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
9372 AAGACAATCA
9382 AGAGTCGAAGAGAAACTTGAT
1 AGAGTCGAAGAGAAACTTGAT
* *
9403 AGAGTCGAAGATACACTTGA
1 AGAGTCGAAGAGAAACTTGA
9423 GAGCATAAGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.41, C:0.12, G:0.27, T:0.20
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTTGAT
Found at i:9493 original size:31 final size:33
Alignment explanation
Indices: 9458--9521 Score: 96
Period size: 31 Copynumber: 2.0 Consensus size: 33
9448 AAATAGATGG
*
9458 AGTGGTGAAAGAAG-TAAGGTGTT-GAGGGTGA
1 AGTGGTGAAAGAAGTTAAGGTGTTAAAGGGTGA
*
9489 AGTGGTGAAAGAAGTTGAGGTGTTAAAGGGTGA
1 AGTGGTGAAAGAAGTTAAGGTGTTAAAGGGTGA
9522 TCTTAAGATG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 14 0.48
32 8 0.28
33 7 0.24
ACGTcount: A:0.33, C:0.00, G:0.44, T:0.23
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTTAAGGTGTTAAAGGGTGA
Found at i:9751 original size:29 final size:27
Alignment explanation
Indices: 9704--9801 Score: 128
Period size: 29 Copynumber: 3.6 Consensus size: 27
9694 AAAATATGAA
9704 GAAGAAAGAGGAGGAAGAAGAAGAGATG
1 GAAGAAAGAGGAGG-AGAAGAAGAGATG
*
9732 GAAGAAAAGAGGGAGGAGAAGAAGAAATG
1 GAAG-AAAGA-GGAGGAGAAGAAGAGATG
*
9761 GAAGAAA-A-GAGGGAGGAGAAGAGATG
1 GAAGAAAGAGGA-GGAGAAGAAGAGATG
9787 GAAGAAAGAGGAGGA
1 GAAGAAAGAGGAGGA
9802 AGTCGATGTC
Statistics
Matches: 62, Mismatches: 3, Indels: 11
0.82 0.04 0.14
Matches are distributed among these distances:
25 2 0.03
26 20 0.32
27 5 0.08
28 9 0.15
29 21 0.34
30 5 0.08
ACGTcount: A:0.53, C:0.00, G:0.44, T:0.03
Consensus pattern (27 bp):
GAAGAAAGAGGAGGAGAAGAAGAGATG
Found at i:14727 original size:182 final size:182
Alignment explanation
Indices: 14247--16536 Score: 3859
Period size: 182 Copynumber: 12.6 Consensus size: 182
14237 TTTTACCTTT
* *
14247 TTTAAAAGAGAAGAAGTTATATCGTCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
1 TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
* * * * *
14312 AATAATATAATAGGTAAAAATATGACAAAACCGGTCTCGAAATGAAAAAACATGTAAAGCGCTAC
66 AACAATATAACATGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTAC
* *
14377 TGGTTATGTTGAAAGTGTCGATAATTTATTATACGTATCGACACTTTTGGAA
131 CGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAA
** *
14429 TTTAAAAGAGAAG-AGTTATAGATCCAATAAAGTGTTGATACTTTATAAAAATGTATCGATCCAT
1 TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
* * *
14493 AATAATATAACATGTAAAAATATGACAAAATCGGTCTCGAAATGAAAAAACAGGTAAAGCGCTAC
66 AACAATATAACATGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTAC
* *
14558 CGGATATGTTGAAAGTGTCGATAATTTATTATAAGTATCGATACTTTTGGAA
131 CGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAA
* *
14610 TTTAAAAGAGAAGAAATTATAGCGCCAATAAAGTGTCGATACTTTATAAAACTGTATCGATCCAT
1 TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
* *
14675 AACAATATAACAGGTAAAAATATGACCAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTAC
66 AACAATATAACATGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTAC
*
14740 CGGTTATGTTGAAAGTGTCGATAATTTATTATACGTATCGACACTTTTGGAA
131 CGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAA
*
14792 TTTAAAAGAGAAG-AGTTATAGCGCCAATAAAGTGTCAATACTTTATAAAAATGTATCGATCCAT
1 TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
*
14856 AACAATATAACATGTAAAAATATGACAAAACCGATCTCGAAATGACAAAACAGGTAAAGCGCTAC
66 AACAATATAACATGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTAC
*
14921 CGGATATGTTGAAAGTGTCGATAATTTATTATAAGTATCG--ACTTTTGGAA
131 CGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAA
* *
14971 -TTAATAAGAGAAGAAGTTATGGCGCCAATAATGTGTCGATACTTTATAAAAATGTATCGATCCA
1 TTTAA-AAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCA
*
15035 TAACAATATAACATGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACATGTAAAGCGCTA
65 TAACAATATAACATGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTA
15100 CCGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCG--ACTTTT-GAA
130 CCGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAA
* * *
15150 ATTAATAAGAGAAGAAGTTATAGCGCCAATAACGTGTCGATACTTTATAAAAATGAATCGATCCA
1 TTTAA-AAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCA
* *
15215 TAACAATATAACATGTAAAAATATGAAAAAACCGGTCTCGAAATGAAAAAACAGGTAAAGCGCTA
65 TAACAATATAACATGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTA
*
15280 CCGGTTATGTTGAAAGTGTCAATAATTTATTATAAGTATCGACACTTTTGGAA
130 CCGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAA
* *
15333 TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATATTTTATAAAAATGTATTGATCCAT
1 TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
*
15398 AACAATATAACAGGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTAC
66 AACAATATAACATGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTAC
* *
15463 CGGATATGTTGAAAGTGTCGATAATTTATTATAAGTATCGATACTTTTGGAA
131 CGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAA
* *
15515 TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATATTTTATAAAACTGTATCGATCCAT
1 TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
* * *
15580 AATAATATAACAGGTAAAAATATGACAAAACTGGTCTCGAAATGACAAAACAGGTAAAGCGCTAC
66 AACAATATAACATGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTAC
*
15645 CGGTTATGTTGAAAGTGTCGATAATTTATTATACGTATCGACACTTTTGGAA
131 CGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAA
*
15697 TTTAAAAGAGAAG-AGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAATTGTATCGATCCAT
1 TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
* *
15761 AACAATATAACATGTAAAAATATGATAAAACCGATCTCGAAATGACAAAACAGGTAAAGCGCTAC
66 AACAATATAACATGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTAC
15826 CGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCG--ACTTTTGGAA
131 CGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAA
* *
15876 -TTAATAAGAGAAGAAGTTATGGCGCCAATAATGTGTCGATACTTTATAAAAATGTATCGATCCA
1 TTTAA-AAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCA
*
15940 TAACAATATAACATGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACATGTAAAGCGCTA
65 TAACAATATAACATGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTA
16005 CCGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAA
130 CCGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAA
* *
16058 TTTAAAAGAGAAGAAGTTATAGCGCAAATAAAGTGTCGATACTTGATAAAAATGTATCGATCCAT
1 TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
* *
16123 AACAATATAACAGGTAATAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTAC
66 AACAATATAACATGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTAC
*
16188 CGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTAGGAA
131 CGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAA
*
16240 TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCAATACTTTATAAAAATGTATCGATCCAT
1 TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
* *
16305 AACAATATAACATGTAAAAATATGACAAAACCGGTCTCAAAATGACAAAACAGGTAAAGCTCTAC
66 AACAATATAACATGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTAC
* *
16370 CGGATATGTTGAAAGTGTCGATAATTTATTATAAGTATTGACACTTTTGGAA
131 CGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAA
*
16422 -TTAATAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCTA
1 TTTAA-AAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCA
* * **
16486 TAATAATATAACATGTAAAAATATGATAAAACCGGTCTATAAATGACAAAA
65 TAACAATATAACATGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAA
16537 GATGAACACA
Statistics
Matches: 1992, Mismatches: 103, Indels: 26
0.94 0.05 0.01
Matches are distributed among these distances:
178 8 0.00
179 39 0.02
180 469 0.24
181 468 0.23
182 997 0.50
183 11 0.01
ACGTcount: A:0.42, C:0.13, G:0.17, T:0.28
Consensus pattern (182 bp):
TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
AACAATATAACATGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTAC
CGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAA
Found at i:16000 original size:725 final size:726
Alignment explanation
Indices: 14248--16536 Score: 3955
Period size: 725 Copynumber: 3.2 Consensus size: 726
14238 TTTACCTTTT
* *
14248 TTAA-AAGAGAAGAAGTTATATCGTCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
1 TTAATAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
* * * *
14312 AATAATATAATAGGTAAAAATATGACAAAACCGGTCTCGAAATGAAAAAACATGTAAAGCGCTAC
66 AACAATATAACATGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACATGTAAAGCGCTAC
* *
14377 TGGTTATGTTGAAAGTGTCGATAATTTATTATACGTATCGACACTTTTGGAATTTAA-AAGAGAA
131 CGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCG--ACTTTTGGAA-TTAATAAGAGAA
** * *
14441 G-AGTTATAGATCCAATAAAGTGTTGATACTTTATAAAAATGTATCGATCCATAATAATATAACA
193 GAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACA
* *
14505 TGTAAAAATATGACAAAATCGGTCTCGAAATGAAAAAACAGGTAAAGCGCTACCGGATATGTTGA
258 TGTAAAAATATGACAAAACCGGTCTCGAAATGAAAAAACAGGTAAAGCGCTACCGGTTATGTTGA
* *
14570 AAGTGTCGATAATTTATTATAAGTATCGATACTTTTGGAATTTAAAAGAGAAGAAATTATAGCGC
323 AAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAATTTAAAAGAGAAGAAGTTATAGCGC
*
14635 CAATAAAGTGTCGATACTTTATAAAACTGTATCGATCCATAACAATATAACAGGTAAAAATATGA
388 CAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGA
*
14700 CCAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTACCGGTTATGTTGAAAGTGTCGATAAT
453 CAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTACCGGTTATGTTGAAAGTGTCGATAAT
*
14765 TTATTATACGTATCGACACTTTTGGAATTTAAAAGAGAAG-AGTTATAGCGCCAATAAAGTGTCA
518 TTATTATAAGTATCGACACTTTTGGAATTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCA
*
14829 ATACTTTATAAAAATGTATCGATCCATAACAATATAACATGTAAAAATATGACAAAACCGATCTC
583 ATACTTTATAAAAATGTATCGATCCATAACAATATAACATGTAAAAATATGACAAAACCGGTCTC
14894 GAAATGACAAAACAGGTAAAGCGCTACCGGATATGTTGAAAGTGTCGATAATTTATTATAAGTAT
648 GAAATGACAAAACAGGTAAAGCGCTACCGGATATGTTGAAAGTGTCGATAATTTATTATAAGTAT
14959 CG--ACTTTTGGAA
713 CGACACTTTTGGAA
* *
14971 TTAATAAGAGAAGAAGTTATGGCGCCAATAATGTGTCGATACTTTATAAAAATGTATCGATCCAT
1 TTAATAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
15036 AACAATATAACATGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACATGTAAAGCGCTAC
66 AACAATATAACATGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACATGTAAAGCGCTAC
*
15101 CGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACTTTTGAAATTAATAAGAGAAGAA
131 CGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACTTTTGGAATTAATAAGAGAAGAA
* *
15166 GTTATAGCGCCAATAACGTGTCGATACTTTATAAAAATGAATCGATCCATAACAATATAACATGT
196 GTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACATGT
*
15231 AAAAATATGAAAAAACCGGTCTCGAAATGAAAAAACAGGTAAAGCGCTACCGGTTATGTTGAAAG
261 AAAAATATGACAAAACCGGTCTCGAAATGAAAAAACAGGTAAAGCGCTACCGGTTATGTTGAAAG
*
15296 TGTCAATAATTTATTATAAGTATCGACACTTTTGGAATTTAAAAGAGAAGAAGTTATAGCGCCAA
326 TGTCGATAATTTATTATAAGTATCGACACTTTTGGAATTTAAAAGAGAAGAAGTTATAGCGCCAA
* *
15361 TAAAGTGTCGATATTTTATAAAAATGTATTGATCCATAACAATATAACAGGTAAAAATATGACAA
391 TAAAGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAA
*
15426 AACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTACCGGATATGTTGAAAGTGTCGATAATTTA
456 AACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTACCGGTTATGTTGAAAGTGTCGATAATTTA
* *
15491 TTATAAGTATCGATACTTTTGGAATTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATA
521 TTATAAGTATCGACACTTTTGGAATTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCAATA
* * * * *
15556 TTTTATAAAACTGTATCGATCCATAATAATATAACAGGTAAAAATATGACAAAACTGGTCTCGAA
586 CTTTATAAAAATGTATCGATCCATAACAATATAACATGTAAAAATATGACAAAACCGGTCTCGAA
* *
15621 ATGACAAAACAGGTAAAGCGCTACCGGTTATGTTGAAAGTGTCGATAATTTATTATACGTATCGA
651 ATGACAAAACAGGTAAAGCGCTACCGGATATGTTGAAAGTGTCGATAATTTATTATAAGTATCGA
15686 CACTTTTGGAA
716 CACTTTTGGAA
*
15697 TTTAA-AAGAGAAG-AGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAATTGTATCGATCCA
1 -TTAATAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCA
* * *
15760 TAACAATATAACATGTAAAAATATGATAAAACCGATCTCGAAATGACAAAACAGGTAAAGCGCTA
65 TAACAATATAACATGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACATGTAAAGCGCTA
15825 CCGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACTTTTGGAATTAATAAGAGAAGA
130 CCGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACTTTTGGAATTAATAAGAGAAGA
* *
15890 AGTTATGGCGCCAATAATGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACATG
195 AGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACATG
* *
15955 TAAAAATATGACAAAACCGGTCTCGAAATGACAAAACATGTAAAGCGCTACCGGTTATGTTGAAA
260 TAAAAATATGACAAAACCGGTCTCGAAATGAAAAAACAGGTAAAGCGCTACCGGTTATGTTGAAA
*
16020 GTGTCGATAATTTATTATAAGTATCGACACTTTTGGAATTTAAAAGAGAAGAAGTTATAGCGCAA
325 GTGTCGATAATTTATTATAAGTATCGACACTTTTGGAATTTAAAAGAGAAGAAGTTATAGCGCCA
* *
16085 ATAAAGTGTCGATACTTGATAAAAATGTATCGATCCATAACAATATAACAGGTAATAATATGACA
390 ATAAAGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACA
16150 AAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTACCGGTTATGTTGAAAGTGTCGATAATTT
455 AAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTACCGGTTATGTTGAAAGTGTCGATAATTT
*
16215 ATTATAAGTATCGACACTTTAGGAATTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCAAT
520 ATTATAAGTATCGACACTTTTGGAATTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCAAT
*
16280 ACTTTATAAAAATGTATCGATCCATAACAATATAACATGTAAAAATATGACAAAACCGGTCTCAA
585 ACTTTATAAAAATGTATCGATCCATAACAATATAACATGTAAAAATATGACAAAACCGGTCTCGA
* *
16345 AATGACAAAACAGGTAAAGCTCTACCGGATATGTTGAAAGTGTCGATAATTTATTATAAGTATTG
650 AATGACAAAACAGGTAAAGCGCTACCGGATATGTTGAAAGTGTCGATAATTTATTATAAGTATCG
16410 ACACTTTTGGAA
715 ACACTTTTGGAA
*
16422 TTAATAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCTAT
1 TTAATAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
* * **
16487 AATAATATAACATGTAAAAATATGATAAAACCGGTCTATAAATGACAAAA
66 AACAATATAACATGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAA
16537 GATGAACACA
Statistics
Matches: 1479, Mismatches: 78, Indels: 15
0.94 0.05 0.01
Matches are distributed among these distances:
721 4 0.00
722 17 0.01
723 348 0.24
724 306 0.21
725 687 0.46
726 113 0.08
727 4 0.00
ACGTcount: A:0.42, C:0.13, G:0.17, T:0.28
Consensus pattern (726 bp):
TTAATAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
AACAATATAACATGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACATGTAAAGCGCTAC
CGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACTTTTGGAATTAATAAGAGAAGAA
GTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACATGT
AAAAATATGACAAAACCGGTCTCGAAATGAAAAAACAGGTAAAGCGCTACCGGTTATGTTGAAAG
TGTCGATAATTTATTATAAGTATCGACACTTTTGGAATTTAAAAGAGAAGAAGTTATAGCGCCAA
TAAAGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAA
AACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTACCGGTTATGTTGAAAGTGTCGATAATTTA
TTATAAGTATCGACACTTTTGGAATTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCAATA
CTTTATAAAAATGTATCGATCCATAACAATATAACATGTAAAAATATGACAAAACCGGTCTCGAA
ATGACAAAACAGGTAAAGCGCTACCGGATATGTTGAAAGTGTCGATAATTTATTATAAGTATCGA
CACTTTTGGAA
Found at i:16001 original size:905 final size:906
Alignment explanation
Indices: 14248--16536 Score: 4100
Period size: 905 Copynumber: 2.5 Consensus size: 906
14238 TTTACCTTTT
* *
14248 TTAAAAGAGAAGAAGTTATATCGTCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCATA
1 TTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCATA
* * * *
14313 ATAATATAATAGGTAAAAATATGACAAAACCGGTCTCGAAATGAAAAAACATGTAAAGCGCTACT
66 ACAATATAACAGGTAAAAATATGACAAAACCGGTCTCGAAATGAAAAAACAGGTAAAGCGCTACC
*
14378 GGTTATGTTGAAAGTGTCGATAATTTATTATACGTATCGACACTTTTGGAATTTAAAAGAGAAG-
131 GGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAATTTAAAAGAGAAGA
** * *
14442 AGTTATAGATCCAATAAAGTGTTGATACTTTATAAAAATGTATCGATCCATAATAATATAACATG
196 AGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACATG
* *
14507 TAAAAATATGACAAAATCGGTCTCGAAATGAAAAAACAGGTAAAGCGCTACCGGATATGTTGAAA
261 TAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTACCGGATATGTTGAAA
*
14572 GTGTCGATAATTTATTATAAGTATCGATACTTTTGGAATTTAAAAGAGAAGAAATTATAGCGCCA
326 GTGTCGATAATTTATTATAAGTATCGATACTTTTGGAATTTAAAAGAGAAGAAGTTATAGCGCCA
* *
14637 ATAAAGTGTCGATACTTTATAAAACTGTATCGATCCATAACAATATAACAGGTAAAAATATGACC
391 ATAAAGTGTCGATACTTTATAAAACTGTATCGATCCATAATAATATAACAGGTAAAAATATGACA
14702 AAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTACCGGTTATGTTGAAAGTGTCGATAATTT
456 AAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTACCGGTTATGTTGAAAGTGTCGATAATTT
14767 ATTATACGTATCGACACTTTTGGAATTTAAAAGAGAAGAGTTATAGCGCCAATAAAGTGTCAATA
521 ATTATACGTATCGACACTTTTGGAATTTAAAAGAGAAGAGTTATAGCGCCAATAAAGTGTCAATA
14832 CTTTATAAAAATGTATCGATCCATAACAATATAACATGTAAAAATATGACAAAACCGATCTCGAA
586 CTTTATAAAAATGTATCGATCCATAACAATATAACATGTAAAAATATGACAAAACCGATCTCGAA
14897 ATGACAAAACAGGTAAAGCGCTACCGGATATGTTGAAAGTGTCGATAATTTATTATAAGTATCGA
651 ATGACAAAACAGGTAAAGCGCTACCGGATATGTTGAAAGTGTCGATAATTTATTATAAGTATCGA
14962 CTTTTGGAATTAATAAGAGAAGAAGTTATGGCGCCAATAATGTGTCGATACTTTATAAAAATGTA
716 CTTTTGGAATTAATAAGAGAAGAAGTTATGGCGCCAATAATGTGTCGATACTTTATAAAAATGTA
15027 TCGATCCATAACAATATAACATGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACATGTA
781 TCGATCCATAACAATATAACATGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACATGTA
15092 AAGCGCTACCGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCG-ACTTTT-GAAA
846 AAGCGCTACCGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGAACTTTTGGAAA
* *
15151 TTAATAAGAGAAGAAGTTATAGCGCCAATAACGTGTCGATACTTTATAAAAATGAATCGATCCAT
1 TTAA-AAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
* *
15216 AACAATATAACATGTAAAAATATGAAAAAACCGGTCTCGAAATGAAAAAACAGGTAAAGCGCTAC
65 AACAATATAACAGGTAAAAATATGACAAAACCGGTCTCGAAATGAAAAAACAGGTAAAGCGCTAC
*
15281 CGGTTATGTTGAAAGTGTCAATAATTTATTATAAGTATCGACACTTTTGGAATTTAAAAGAGAAG
130 CGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAATTTAAAAGAGAAG
* * *
15346 AAGTTATAGCGCCAATAAAGTGTCGATATTTTATAAAAATGTATTGATCCATAACAATATAACAG
195 AAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAT
15411 GTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTACCGGATATGTTGAA
260 GTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTACCGGATATGTTGAA
15476 AGTGTCGATAATTTATTATAAGTATCGATACTTTTGGAATTTAAAAGAGAAGAAGTTATAGCGCC
325 AGTGTCGATAATTTATTATAAGTATCGATACTTTTGGAATTTAAAAGAGAAGAAGTTATAGCGCC
*
15541 AATAAAGTGTCGATATTTTATAAAACTGTATCGATCCATAATAATATAACAGGTAAAAATATGAC
390 AATAAAGTGTCGATACTTTATAAAACTGTATCGATCCATAATAATATAACAGGTAAAAATATGAC
*
15606 AAAACTGGTCTCGAAATGACAAAACAGGTAAAGCGCTACCGGTTATGTTGAAAGTGTCGATAATT
455 AAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTACCGGTTATGTTGAAAGTGTCGATAATT
*
15671 TATTATACGTATCGACACTTTTGGAATTTAAAAGAGAAGAGTTATAGCGCCAATAAAGTGTCGAT
520 TATTATACGTATCGACACTTTTGGAATTTAAAAGAGAAGAGTTATAGCGCCAATAAAGTGTCAAT
* *
15736 ACTTTATAAAATTGTATCGATCCATAACAATATAACATGTAAAAATATGATAAAACCGATCTCGA
585 ACTTTATAAAAATGTATCGATCCATAACAATATAACATGTAAAAATATGACAAAACCGATCTCGA
*
15801 AATGACAAAACAGGTAAAGCGCTACCGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCG
650 AATGACAAAACAGGTAAAGCGCTACCGGATATGTTGAAAGTGTCGATAATTTATTATAAGTATCG
15866 ACTTTTGGAATTAATAAGAGAAGAAGTTATGGCGCCAATAATGTGTCGATACTTTATAAAAATGT
715 ACTTTTGGAATTAATAAGAGAAGAAGTTATGGCGCCAATAATGTGTCGATACTTTATAAAAATGT
15931 ATCGATCCATAACAATATAACATGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACATGT
780 ATCGATCCATAACAATATAACATGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACATGT
*
15996 AAAGCGCTACCGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAAT
845 AAAGCGCTACCGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGA-ACTTTTGGAAA
* *
16059 TTAAAAGAGAAGAAGTTATAGCGCAAATAAAGTGTCGATACTTGATAAAAATGTATCGATCCATA
1 TTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCATA
* *
16124 ACAATATAACAGGTAATAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTACC
66 ACAATATAACAGGTAAAAATATGACAAAACCGGTCTCGAAATGAAAAAACAGGTAAAGCGCTACC
*
16189 GGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTAGGAATTTAAAAGAGAAGA
131 GGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAATTTAAAAGAGAAGA
*
16254 AGTTATAGCGCCAATAAAGTGTCAATACTTTATAAAAATGTATCGATCCATAACAATATAACATG
196 AGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACATG
* *
16319 TAAAAATATGACAAAACCGGTCTCAAAATGACAAAACAGGTAAAGCTCTACCGGATATGTTGAAA
261 TAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTACCGGATATGTTGAAA
* *
16384 GTGTCGATAATTTATTATAAGTATTGACACTTTTGGAA-TTAATAAGAGAAGAAGTTATAGCGCC
326 GTGTCGATAATTTATTATAAGTATCGATACTTTTGGAATTTAA-AAGAGAAGAAGTTATAGCGCC
* * * *
16448 AATAAAGTGTCGATACTTTATAAAAATGTATCGATCTATAATAATATAACATGTAAAAATATGAT
390 AATAAAGTGTCGATACTTTATAAAACTGTATCGATCCATAATAATATAACAGGTAAAAATATGAC
**
16513 AAAACCGGTCTATAAATGACAAAA
455 AAAACCGGTCTCGAAATGACAAAA
16537 GATGAACACA
Statistics
Matches: 1323, Mismatches: 57, Indels: 8
0.95 0.04 0.01
Matches are distributed among these distances:
903 4 0.00
904 178 0.13
905 681 0.51
906 4 0.00
907 449 0.34
908 7 0.01
ACGTcount: A:0.42, C:0.13, G:0.17, T:0.28
Consensus pattern (906 bp):
TTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCATA
ACAATATAACAGGTAAAAATATGACAAAACCGGTCTCGAAATGAAAAAACAGGTAAAGCGCTACC
GGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAATTTAAAAGAGAAGA
AGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACATG
TAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTACCGGATATGTTGAAA
GTGTCGATAATTTATTATAAGTATCGATACTTTTGGAATTTAAAAGAGAAGAAGTTATAGCGCCA
ATAAAGTGTCGATACTTTATAAAACTGTATCGATCCATAATAATATAACAGGTAAAAATATGACA
AAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTACCGGTTATGTTGAAAGTGTCGATAATTT
ATTATACGTATCGACACTTTTGGAATTTAAAAGAGAAGAGTTATAGCGCCAATAAAGTGTCAATA
CTTTATAAAAATGTATCGATCCATAACAATATAACATGTAAAAATATGACAAAACCGATCTCGAA
ATGACAAAACAGGTAAAGCGCTACCGGATATGTTGAAAGTGTCGATAATTTATTATAAGTATCGA
CTTTTGGAATTAATAAGAGAAGAAGTTATGGCGCCAATAATGTGTCGATACTTTATAAAAATGTA
TCGATCCATAACAATATAACATGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACATGTA
AAGCGCTACCGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGAACTTTTGGAAA
Found at i:16776 original size:87 final size:87
Alignment explanation
Indices: 16673--16834 Score: 288
Period size: 87 Copynumber: 1.9 Consensus size: 87
16663 AATAGGTCAG
16673 TATAAACGCTACCTATTACATTATATAAGCGCTACCTAATATGTTATTGTACTTGACAATATTTC
1 TATAAACGCTACCTATTACATTATATAAGCGCTACCTAATATGTTATTGTACTTGACAATATTTC
16738 CGGTTAAATACCTATTTTATTA
66 CGGTTAAATACCTATTTTATTA
* * * *
16760 TATAAGCGCTATCTATTACATTATATAAGCGTTACCTAATATGTTATTGTACTTGATAATATTTC
1 TATAAACGCTACCTATTACATTATATAAGCGCTACCTAATATGTTATTGTACTTGACAATATTTC
16825 CGGTTAAATA
66 CGGTTAAATA
16835 ATATAACATA
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
87 71 1.00
ACGTcount: A:0.33, C:0.15, G:0.10, T:0.41
Consensus pattern (87 bp):
TATAAACGCTACCTATTACATTATATAAGCGCTACCTAATATGTTATTGTACTTGACAATATTTC
CGGTTAAATACCTATTTTATTA
Found at i:16806 original size:23 final size:23
Alignment explanation
Indices: 16756--16800 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
16746 TACCTATTTT
* *
16756 ATTATATAAGCGCTATCTATTAC
1 ATTATATAAGCGCTACCTAATAC
*
16779 ATTATATAAGCGTTACCTAATA
1 ATTATATAAGCGCTACCTAATA
16801 TGTTATTGTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.38, C:0.16, G:0.09, T:0.38
Consensus pattern (23 bp):
ATTATATAAGCGCTACCTAATAC
Found at i:17860 original size:2 final size:2
Alignment explanation
Indices: 17853--17878 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
17843 ATGGACAGCT
17853 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
17879 ATCTATGAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:18244 original size:50 final size:49
Alignment explanation
Indices: 18162--18262 Score: 132
Period size: 50 Copynumber: 2.0 Consensus size: 49
18152 GCATTGTCCT
* *
18162 AATGCAATGAAAAAATGATATTTACAGCATGCAATGACATAACAACATAA
1 AATGCAATGAAAAAATGATATTCACAGCATGCAATGACATAA-AAAATAA
* * *
18212 AATGCAATGATAATATGATATTCACCTG-ATGCAATGACATAAAAAATAA
1 AATGCAATGAAAAAATGATATTCA-CAGCATGCAATGACATAAAAAATAA
18261 AA
1 AA
18263 AAAATTCTAA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
49 8 0.18
50 35 0.78
51 2 0.04
ACGTcount: A:0.51, C:0.13, G:0.12, T:0.24
Consensus pattern (49 bp):
AATGCAATGAAAAAATGATATTCACAGCATGCAATGACATAAAAAATAA
Found at i:23407 original size:33 final size:32
Alignment explanation
Indices: 23343--23403 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 32
23333 AAGACGATGG
*
23343 TATGACTTTATTGTCTCAACAAAAGGTAAGGC
1 TATGACTTTATTGTCTCAACAAAAGATAAGGC
* *
23375 TATGACTTTTTGTGTCTCGA-AAAAGATAA
1 TATGACTTTAT-TGTCTCAACAAAAGATAA
23404 AGGCAATATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
32 18 0.72
33 7 0.28
ACGTcount: A:0.34, C:0.13, G:0.18, T:0.34
Consensus pattern (32 bp):
TATGACTTTATTGTCTCAACAAAAGATAAGGC
Found at i:24830 original size:19 final size:19
Alignment explanation
Indices: 24802--24839 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
24792 CTTTATTGAA
* *
24802 AATTTTAAAATTTTGAATT
1 AATTTAAAAATATTGAATT
24821 AATTTAAAAATATTGAATT
1 AATTTAAAAATATTGAATT
24840 GGAGTCTCCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.47
Consensus pattern (19 bp):
AATTTAAAAATATTGAATT
Found at i:31468 original size:15 final size:14
Alignment explanation
Indices: 31445--31488 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 14
31435 TTTTGCCCTA
31445 TTTTTTCTTTGCTT
1 TTTTTTCTTTGCTT
31459 TTTTTCTCTTTGCTT
1 TTTTT-TCTTTGCTT
31474 TAATTTGTTCTTTGC
1 T--TTT-TTCTTTGC
31489 ACATTGCTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
14 5 0.19
15 10 0.38
17 10 0.38
18 1 0.04
ACGTcount: A:0.05, C:0.16, G:0.09, T:0.70
Consensus pattern (14 bp):
TTTTTTCTTTGCTT
Done.