Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007319.1 Hibiscus syriacus cultivar Beakdansim tig00019534_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  133019

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8198--8373
90
2.0
90
94
0
307
38
10
6
44
1.65
9331--9399
33
2.1
33
97
0
129
27
17
17
37
1.92
15246--15314
24
2.8
24
93
2
120
59
15
11
13
1.61
15303--15335
14
2.4
14
90
10
50
78
0
21
0
0.75
17050--17074
11
2.3
11
100
0
50
16
36
8
40
1.77
22132--22168
19
1.9
19
88
0
56
40
5
16
37
1.71
33900--33950
19
2.6
20
90
3
77
45
5
11
37
1.65
36178--36230
26
2.0
26
100
0
106
52
0
32
15
1.42
36432--36478
24
2.0
24
86
0
67
34
14
25
25
1.94
46810--46839
13
2.4
13
94
5
53
43
0
30
26
1.55
50185--50227
23
1.9
21
81
13
50
34
13
18
32
1.90
51438--51463
5
5.2
5
100
0
52
0
19
0
80
0.71
51452--51516
26
2.4
27
79
10
69
9
13
12
64
1.49
52817--52921
36
2.9
36
91
1
167
29
5
35
29
1.81
64273--64358
13
7.2
12
72
22
58
29
3
37
30
1.74
64255--64359
36
2.9
36
95
1
185
28
4
36
30
1.78
71507--71798
145
2.0
145
96
4
536
45
6
24
23
1.77
74184--74301
60
2.0
58
96
3
218
33
11
27
28
1.91
82018--82057
9
4.4
9
87
6
55
0
15
0
85
0.61
82018--82058
13
3.2
13
89
10
66
0
14
0
85
0.60
82017--82058
22
1.9
22
95
0
75
0
16
0
83
0.65
82043--82095
27
1.9
28
85
11
74
5
15
15
64
1.47
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
82043--82101
28
2.1
28
81
12
68
8
15
13
62
1.53
82128--82152
11
2.3
11
100
0
50
16
36
8
40
1.77
87010--87048
2
19.5
2
94
0
69
46
0
2
51
1.14
89723--89749
13
2.1
13
100
0
54
33
29
0
37
1.58
91250--91291
19
2.2
19
87
8
59
35
7
14
42
1.73
106766--106799
16
2.1
17
89
10
54
11
23
0
64
1.26
109233--109271
19
2.0
20
90
10
62
41
5
12
41
1.65
109550--109591
16
2.6
16
96
0
75
28
11
33
26
1.92
111239--111290
19
2.6
21
84
6
72
48
5
13
32
1.66
114650--114719
19
3.8
18
80
16
81
7
14
4
74
1.19
114988--115027
19
2.0
20
90
4
64
65
0
15
20
1.28
120225--120287
28
2.3
27
81
13
74
73
4
14
7
1.23
120219--120288
29
2.3
29
77
20
81
71
5
15
7
1.27
120220--120276
14
3.7
16
71
21
50
75
3
15
5
1.12
120986--121038
24
2.2
24
86
6
72
37
13
24
24
1.91
121799--121857
29
2.0
30
86
3
84
28
8
10
52
1.64
122734--122785
21
2.6
21
90
6
81
34
13
5
46
1.67
123140--123184
13
3.5
13
84
3
56
35
35
2
26
1.69
124513--124560
15
3.1
14
83
16
60
58
0
25
16
1.38
124509--124562
26
2.1
24
83
16
65
59
0
22
18
1.38
129716--129758
23
1.9
21
81
13
50
32
18
11
37
1.87

Tables:   1

The End!