Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007320.1 Hibiscus syriacus cultivar Beakdansim tig00019536_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 245168
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
File 1 of 2
Found at i:1554 original size:27 final size:27
Alignment explanation
Indices: 1506--1572 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 27
1496 GAATTTTTGG
*
1506 TCCACCCGACCCGAAAATTATAAACCC
1 TCCACCCGACCCGAAAATTATAAACAC
* *
1533 TCCACCCGACCCG-AAATATATATACAT
1 TCCACCCGACCCGAAAAT-TATAAACAC
*
1560 TCCACTCGACCCG
1 TCCACCCGACCCG
1573 TCCAACACAA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
26 4 0.11
27 31 0.89
ACGTcount: A:0.33, C:0.40, G:0.09, T:0.18
Consensus pattern (27 bp):
TCCACCCGACCCGAAAATTATAAACAC
Found at i:8904 original size:25 final size:25
Alignment explanation
Indices: 8876--8929 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
8866 CCAGGGGTGG
8876 AAAATAT-ATTAATATAATATAGTAT
1 AAAATATGA-TAATATAATATAGTAT
* * *
8901 AAAATATGATATTATATTATATTAT
1 AAAATATGATAATATAATATAGTAT
8926 AAAA
1 AAAA
8930 ATAACCGATA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 24 0.96
26 1 0.04
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.41
Consensus pattern (25 bp):
AAAATATGATAATATAATATAGTAT
Found at i:9015 original size:19 final size:19
Alignment explanation
Indices: 8970--9016 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
8960 ATTTTTATTA
8970 AAAATAATACTAAAATAAT
1 AAAATAATACTAAAATAAT
* * *
8989 ATATTAATA-TTAAATATAT
1 AAAATAATACTAAAATA-AT
9008 AAAATAATA
1 AAAATAATA
9017 ATGTTTTGAG
Statistics
Matches: 22, Mismatches: 5, Indels: 2
0.76 0.17 0.07
Matches are distributed among these distances:
18 6 0.27
19 16 0.73
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (19 bp):
AAAATAATACTAAAATAAT
Found at i:10891 original size:30 final size:30
Alignment explanation
Indices: 10829--10933 Score: 147
Period size: 31 Copynumber: 3.4 Consensus size: 30
10819 AGTAACGAGC
* *
10829 TTAATGAGCAAGAGTTGAACAACAAGTTTTT
1 TTAACGAGCACGAGTTGAACAACAA-TTTTT
*
10860 TTAACGAGCACGAGTTGAACAATAATTTTT
1 TTAACGAGCACGAGTTGAACAACAATTTTT
* *
10890 TTAACGAGCACCAGTTGAGCAACAATTTTT
1 TTAACGAGCACGAGTTGAACAACAATTTTT
10920 ATTAACGAGCACGA
1 -TTAACGAGCACGA
10934 ATCGAACACT
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
30 32 0.48
31 34 0.52
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (30 bp):
TTAACGAGCACGAGTTGAACAACAATTTTT
Found at i:11699 original size:21 final size:21
Alignment explanation
Indices: 11665--11722 Score: 71
Period size: 21 Copynumber: 2.8 Consensus size: 21
11655 CGTTACAATG
* *
11665 TTGATTTGGTAGTTCACAGTA
1 TTGATGTGGCAGTTCACAGTA
* *
11686 TTGATGTGGCAGTTCACGGTG
1 TTGATGTGGCAGTTCACAGTA
*
11707 CTGATGTGGCAGTTCA
1 TTGATGTGGCAGTTCA
11723 TGGTGCTGAC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.19, C:0.14, G:0.31, T:0.36
Consensus pattern (21 bp):
TTGATGTGGCAGTTCACAGTA
Found at i:11727 original size:21 final size:21
Alignment explanation
Indices: 11687--11731 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
11677 TTCACAGTAT
11687 TGATGTGGCAGTTCACGGTGC
1 TGATGTGGCAGTTCACGGTGC
*
11708 TGATGTGGCAGTTCATGGTGC
1 TGATGTGGCAGTTCACGGTGC
11729 TGA
1 TGA
11732 CGTGACAATC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.16, C:0.16, G:0.38, T:0.31
Consensus pattern (21 bp):
TGATGTGGCAGTTCACGGTGC
Found at i:12883 original size:23 final size:24
Alignment explanation
Indices: 12854--12902 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
12844 TGTGTTTGCC
*
12854 TTTTAGTATTTAACT-A-TTATTAT
1 TTTTAGT-TTTAAATGAGTTATTAT
12877 TTTTAGTTTTAAATGAGTTATTAT
1 TTTTAGTTTTAAATGAGTTATTAT
12901 TT
1 TT
12903 GATAAATAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 6 0.26
23 8 0.35
24 9 0.39
ACGTcount: A:0.29, C:0.02, G:0.08, T:0.61
Consensus pattern (24 bp):
TTTTAGTTTTAAATGAGTTATTAT
Found at i:22903 original size:2 final size:2
Alignment explanation
Indices: 22896--22944 Score: 80
Period size: 2 Copynumber: 24.0 Consensus size: 2
22886 ATTATGTCGA
22896 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT ACT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT
*
22939 AG AT AT
1 AT AT AT
22945 TTATTAGTCA
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
2 42 0.95
3 2 0.05
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (2 bp):
AT
Found at i:26520 original size:34 final size:33
Alignment explanation
Indices: 26475--26539 Score: 112
Period size: 34 Copynumber: 1.9 Consensus size: 33
26465 TTTTGATAAA
*
26475 TTTTTTTATTATAACTGATTTATTTTATTTTAT
1 TTTTTTTATTATAACTGATATATTTTATTTTAT
26508 TTTTTTTGATTATAACTGATATATTTTATTTT
1 TTTTTTT-ATTATAACTGATATATTTTATTTT
26540 TTAACTTTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
33 7 0.23
34 23 0.77
ACGTcount: A:0.25, C:0.03, G:0.05, T:0.68
Consensus pattern (33 bp):
TTTTTTTATTATAACTGATATATTTTATTTTAT
Found at i:26813 original size:44 final size:44
Alignment explanation
Indices: 26727--26813 Score: 102
Period size: 44 Copynumber: 2.0 Consensus size: 44
26717 ATAACTATGC
* * ** * **
26727 CGTTAATTTATGCACTATTTTCTCGGATGTAACCTCTTATATAT
1 CGTTAATTTATGCACCATTTACTCACATATAACCTCCAATATAT
*
26771 CGTTAATTTATGCACCATTTACTCACATATAAGCTCCAATATA
1 CGTTAATTTATGCACCATTTACTCACATATAACCTCCAATATA
26814 CATTATAATC
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
44 35 1.00
ACGTcount: A:0.30, C:0.21, G:0.09, T:0.40
Consensus pattern (44 bp):
CGTTAATTTATGCACCATTTACTCACATATAACCTCCAATATAT
Found at i:27931 original size:17 final size:17
Alignment explanation
Indices: 27911--27949 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
27901 TTTTTAATAA
27911 AAAATACATAAAATTTT
1 AAAATACATAAAATTTT
* *
27928 AAAATATATAAATTTTT
1 AAAATACATAAAATTTT
27945 AAAAT
1 AAAAT
27950 TTTCAGGGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (17 bp):
AAAATACATAAAATTTT
Found at i:30068 original size:17 final size:17
Alignment explanation
Indices: 30037--30084 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
30027 TTCGGGTTAA
**
30037 ATTCGGTTCAAGTTTCC
1 ATTCGGTTCGGGTTTCC
*
30054 ATTCGGTTCGGGTTTGC
1 ATTCGGTTCGGGTTTCC
* *
30071 TTTCGGTTTGGGTT
1 ATTCGGTTCGGGTT
30085 ATTTTCAGTT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.08, C:0.17, G:0.29, T:0.46
Consensus pattern (17 bp):
ATTCGGTTCGGGTTTCC
Found at i:31710 original size:236 final size:238
Alignment explanation
Indices: 31195--31780 Score: 634
Period size: 236 Copynumber: 2.5 Consensus size: 238
31185 TGGATAAGTC
** * * *
31195 ATGTTAAACAAGTTCTTCTCATTACAAAC-TC-TCAACTGAAAATGTTGATCCACCACTTTCTGT
1 ATGTTAAACAAGTTCTTCTCATTATGAACTTCTTC-ACTGGAAATGTTGATCCACCTCCTTCTGT
* ** * * * *
31258 GATGGACGAG-CTAAGGTCGAACAAGTTCTTCTCATTATAAACTTGTTCTCTTGGGAATGCTGAT
65 GATGGACGAGTC-AAGGTTGAACAAACTATTCTCATTATAAACTTCTTCACTTGGAAATGCTGAT
* * * * *
31322 ATAACCCCTTATGTGATGGAATCGAGCAAATATTGAGCAAGTTCTTCTTCTTATTATGAACTTCT
129 ACAACCCCTTATGTGATGAAATCGAGCAAAAATTAAACAAGTTCTTCTTC-TATTATGAACTTCT
* * * * *
31387 TCACTAGAGATGTTGATCCACCTCATTCTGTGATAGACTTGAGCAA
193 TCACTAGAAATGCTGATACACCTCATTCTGTGATAGAATCGAGCAA
* *
31433 A-GATTGAACAAGTTCTTCTCATTATGAACTTATTCACTGGAAATGTTGATCCACCTCCTTCTGT
1 ATG-TTAAACAAGTTCTTCTCATTATGAACTTCTTCACTGGAAATGTTGATCCACCTCCTTCTGT
* * *
31497 GATGGACGAGTCAAGGTTGAACAAACTATTCTCATTATGAACTTCTTCAC-TGGAAATGTTGA-C
65 GATGGACGAGTCAAGGTTGAACAAACTATTCTCATTATAAACTTCTTCACTTGGAAATGCTGATA
* * * * *
31560 CCACCTCTTTCTGTGATGAAATTGAGCAAAAATTAAACAAGTTCTTC-TC-ATTATGAACTTTTT
130 CAACC-CCTTATGTGATGAAATCGAGCAAAAATTAAACAAGTTCTTCTTCTATTATGAAC-TTCT
* * * * *
31623 TCATTGGAAATGCTGATATACCTCTTTTTGTGAT-GAAATCGAGCAA
193 TCACTAGAAATGCTGATACACCTCATTCTGTGATAG-AATCGAGCAA
* *
31669 ATGTTAAACAAGTTCTTCTTATTATGAACTTCTTCACTGGAAATGTTGATCCACCTCCTTTTGTG
1 ATGTTAAACAAGTTCTTCTCATTATGAACTTCTTCACTGGAAATGTTGATCCACCTCCTTCTGTG
* * * * *
31734 ATAGATGAGTCAAGGTTGAAC-AAGTCCTTCTTATTATAAACTTCTTC
66 ATGGACGAGTCAAGGTTGAACAAACT-ATTCTCATTATAAACTTCTTC
31781 TCCATCATCG
Statistics
Matches: 292, Mismatches: 47, Indels: 20
0.81 0.13 0.06
Matches are distributed among these distances:
235 13 0.04
236 133 0.46
237 7 0.02
238 68 0.23
239 68 0.23
240 3 0.01
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.35
Consensus pattern (238 bp):
ATGTTAAACAAGTTCTTCTCATTATGAACTTCTTCACTGGAAATGTTGATCCACCTCCTTCTGTG
ATGGACGAGTCAAGGTTGAACAAACTATTCTCATTATAAACTTCTTCACTTGGAAATGCTGATAC
AACCCCTTATGTGATGAAATCGAGCAAAAATTAAACAAGTTCTTCTTCTATTATGAACTTCTTCA
CTAGAAATGCTGATACACCTCATTCTGTGATAGAATCGAGCAA
Found at i:31734 original size:159 final size:159
Alignment explanation
Indices: 31195--31776 Score: 568
Period size: 156 Copynumber: 3.7 Consensus size: 159
31185 TGGATAAGTC
** * *
31195 ATGTTAAACAAGTTCTTCTCATTACAAAC-TC-TCAACTGAAAATGTTGATCCACC-ACTTTCTG
1 ATGTTAAACAAGTTCTTCTCATTATGAACTTCTTC-ACTGGAAATGTTGATCCACCTCCTTTCTG
* * * * * * * *
31257 TGATG-GA-CGAGCTAAGGTCGAACAAGTTCTTCTCATTATAAACTTGTTCTC-TTGGGAATGCT
65 TGATGAAATTGAGCAAAGATTGAACAAGTTCTTCTCATTATGAACTT-TTTTCATTGGAAATGCT
31319 GATATAACC-CCTTATGTGATGGAATCGAGCAA
129 GATAT-ACCTCCTTATGTGAT-GAATCGAGCAA
* * * * * *
31351 ATATTGAGCAAGTTCTTCTTCTTATTATGAACTTCTTCACTAGAGATGTTGATCCACCT-CATTC
1 ATGTTAAACAAGTTCTTC-TC--ATTATGAACTTCTTCACTGGAAATGTTGATCCACCTCCTTTC
* * *
31415 TGTGAT-AGACTTGAGCAAAGATTGAACAAGTTCTTCTCATTATGAAC-TTATTCACTGGAAATG
63 TGTGATGA-AATTGAGCAAAGATTGAACAAGTTCTTCTCATTATGAACTTTTTTCATTGGAAATG
* ** * *
31478 TTGATCCACCTCCTTCTGTGATGGA-CGAGTC-A
127 CTGATATACCTCCTTATGTGATGAATCGAG-CAA
* * ** * *
31510 AGGTTGAACAAACTATTCTCATTATGAACTTCTTCACTGGAAATGTTGACCCACCT-CTTTCTGT
1 ATGTTAAACAAGTTCTTCTCATTATGAACTTCTTCACTGGAAATGTTGATCCACCTCCTTTCTGT
* *
31574 GATGAAATTGAGCAAAAATTAAACAAGTTCTTCTCATTATGAACTTTTTTCATTGGAAATGCTGA
66 GATGAAATTGAGCAAAGATTGAACAAGTTCTTCTCATTATGAACTTTTTTCATTGGAAATGCTGA
* *
31639 TATACCTCTTTTTGTGATGAAATCGAGCAA
131 TATACCTCCTTATGTGATG-AATCGAGCAA
*
31669 ATGTTAAACAAGTTCTTCTTATTATGAACTTCTTCACTGGAAATGTTGATCCACCTCCTTT-TGT
1 ATGTTAAACAAGTTCTTCTCATTATGAACTTCTTCACTGGAAATGTTGATCCACCTCCTTTCTGT
* * * * *
31733 GAT-AGA-TGAGTC-AAGGTTGAACAAGTCCTTCTTATTATAAACTT
66 GATGAAATTGAG-CAAAGATTGAACAAGTTCTTCTCATTATGAACTT
31777 CTTCTCCATC
Statistics
Matches: 347, Mismatches: 60, Indels: 37
0.78 0.14 0.08
Matches are distributed among these distances:
156 94 0.27
157 65 0.19
158 7 0.02
159 84 0.24
160 42 0.12
161 24 0.07
162 31 0.09
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.35
Consensus pattern (159 bp):
ATGTTAAACAAGTTCTTCTCATTATGAACTTCTTCACTGGAAATGTTGATCCACCTCCTTTCTGT
GATGAAATTGAGCAAAGATTGAACAAGTTCTTCTCATTATGAACTTTTTTCATTGGAAATGCTGA
TATACCTCCTTATGTGATGAATCGAGCAA
Found at i:32698 original size:64 final size:63
Alignment explanation
Indices: 32627--32851 Score: 188
Period size: 64 Copynumber: 3.5 Consensus size: 63
32617 TTATATGAAT
** *
32627 GTGCATCGATGCATTGGTAGTGCATCGATGCA-CTATTTTAA-AATAATAACATCGAATGTAATT
1 GTGCATCGATGCATT-GTAGTGCATCGATGCATC-ACGTTAATAATAA-AACATCGAATGCAATT
32690 C
63 C
* * * *
32691 GTGCATCGATGCATAAGTAGTGCATCGATGCATCCCGTTAATAATGAAACATCGAATGCAATTG
1 GTGCATCGATGCAT-TGTAGTGCATCGATGCATCACGTTAATAATAAAACATCGAATGCAATTC
* *** ** * * *
32755 GTGCATCGATGCATAATG-AGTGCATCGATGCATCCCAACAATAATACTACATCGAATAC-CTTT
1 GTGCATCGATGCAT--TGTAGTGCATCGATGCATCACGTTAATAATAAAACATCGAATGCAATTC
* *
32818 GATGCACCGATGCATCAGTAGTGCATCGATGCAT
1 G-TGCATCGATGCAT-TGTAGTGCATCGATGCAT
32852 ACCTTCATTA
Statistics
Matches: 135, Mismatches: 20, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
63 4 0.03
64 124 0.92
65 7 0.05
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (63 bp):
GTGCATCGATGCATTGTAGTGCATCGATGCATCACGTTAATAATAAAACATCGAATGCAATTC
Found at i:33177 original size:12 final size:12
Alignment explanation
Indices: 33160--33206 Score: 67
Period size: 12 Copynumber: 3.9 Consensus size: 12
33150 ATATATGTTC
33160 ATGTGATATGAT
1 ATGTGATATGAT
33172 ATGTGATATGAT
1 ATGTGATATGAT
* *
33184 GTGTGATATGAC
1 ATGTGATATGAT
*
33196 ATGTAATATGA
1 ATGTGATATGA
33207 GAACATGATA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.34, C:0.02, G:0.26, T:0.38
Consensus pattern (12 bp):
ATGTGATATGAT
Found at i:33193 original size:24 final size:24
Alignment explanation
Indices: 33161--33206 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
33151 TATATGTTCA
* *
33161 TGTGATATGATATGTGATATGATG
1 TGTGATATGACATGTAATATGATG
33185 TGTGATATGACATGTAATATGA
1 TGTGATATGACATGTAATATGA
33207 GAACATGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.33, C:0.02, G:0.26, T:0.39
Consensus pattern (24 bp):
TGTGATATGACATGTAATATGATG
Found at i:33254 original size:29 final size:29
Alignment explanation
Indices: 33218--33284 Score: 134
Period size: 29 Copynumber: 2.3 Consensus size: 29
33208 AACATGATAT
33218 GAAATGACATGAGCTACATGATCACAAGA
1 GAAATGACATGAGCTACATGATCACAAGA
33247 GAAATGACATGAGCTACATGATCACAAGA
1 GAAATGACATGAGCTACATGATCACAAGA
33276 GAAATGACA
1 GAAATGACA
33285 GAAGTATATG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 38 1.00
ACGTcount: A:0.46, C:0.16, G:0.21, T:0.16
Consensus pattern (29 bp):
GAAATGACATGAGCTACATGATCACAAGA
Found at i:33398 original size:15 final size:15
Alignment explanation
Indices: 33380--33426 Score: 94
Period size: 15 Copynumber: 3.1 Consensus size: 15
33370 GAGGGTATAA
33380 TAGTCCTTCGGGATG
1 TAGTCCTTCGGGATG
33395 TAGTCCTTCGGGATG
1 TAGTCCTTCGGGATG
33410 TAGTCCTTCGGGATG
1 TAGTCCTTCGGGATG
33425 TA
1 TA
33427 ATGGTCCTAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 32 1.00
ACGTcount: A:0.15, C:0.19, G:0.32, T:0.34
Consensus pattern (15 bp):
TAGTCCTTCGGGATG
Found at i:39793 original size:64 final size:64
Alignment explanation
Indices: 39622--39846 Score: 217
Period size: 64 Copynumber: 3.5 Consensus size: 64
39612 TTATATGAAT
** ***
39622 GTGCATCGATGCATTGGTAGTGCATCGATGCACTATTTTAA-AATAAT--AACATCGAATGTAAT
1 GTGCATCGATGCATAAGTAGTGCATCGATG--C-ATCCCAACAATAATACAACATCGAATGTAAT
*
39684 TC
63 TG
***
39686 GTGCATCGATGCATAAGTAGTGCATCGATGCATCCCGTTAATAATGA-AACATCGAATGTAATTG
1 GTGCATCGATGCATAAGTAGTGCATCGATGCATCCCAACAATAAT-ACAACATCGAATGTAATTG
* ****
39750 GTGCATCGATGCATAA-TGAGTGCATCGATGCATCCCAACAATAATACTACATCGAATACCTTTG
1 GTGCATCGATGCATAAGT-AGTGCATCGATGCATCCCAACAATAATACAACATCGAATGTAATTG
* * *
39814 ATGCACCGATGCATCAGTAGTGCATCGATGCAT
1 GTGCATCGATGCATAAGTAGTGCATCGATGCAT
39847 ACCTTCATTA
Statistics
Matches: 136, Mismatches: 19, Indels: 12
0.81 0.11 0.07
Matches are distributed among these distances:
61 2 0.01
62 7 0.05
63 2 0.01
64 124 0.91
65 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (64 bp):
GTGCATCGATGCATAAGTAGTGCATCGATGCATCCCAACAATAATACAACATCGAATGTAATTG
Found at i:40172 original size:12 final size:12
Alignment explanation
Indices: 40155--40201 Score: 67
Period size: 12 Copynumber: 3.9 Consensus size: 12
40145 ATATATGTTC
40155 ATGTGATATGAT
1 ATGTGATATGAT
40167 ATGTGATATGAT
1 ATGTGATATGAT
* *
40179 GTGTGATATGAC
1 ATGTGATATGAT
*
40191 ATGTAATATGA
1 ATGTGATATGA
40202 GAACATGATA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.34, C:0.02, G:0.26, T:0.38
Consensus pattern (12 bp):
ATGTGATATGAT
Found at i:40188 original size:24 final size:24
Alignment explanation
Indices: 40156--40201 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
40146 TATATGTTCA
* *
40156 TGTGATATGATATGTGATATGATG
1 TGTGATATGACATGTAATATGATG
40180 TGTGATATGACATGTAATATGA
1 TGTGATATGACATGTAATATGA
40202 GAACATGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.33, C:0.02, G:0.26, T:0.39
Consensus pattern (24 bp):
TGTGATATGACATGTAATATGATG
Found at i:40364 original size:15 final size:15
Alignment explanation
Indices: 40346--40392 Score: 94
Period size: 15 Copynumber: 3.1 Consensus size: 15
40336 GAGGGTATAA
40346 TAGTCCTTCGGGATG
1 TAGTCCTTCGGGATG
40361 TAGTCCTTCGGGATG
1 TAGTCCTTCGGGATG
40376 TAGTCCTTCGGGATG
1 TAGTCCTTCGGGATG
40391 TA
1 TA
40393 ATGGTCCTAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 32 1.00
ACGTcount: A:0.15, C:0.19, G:0.32, T:0.34
Consensus pattern (15 bp):
TAGTCCTTCGGGATG
Found at i:41716 original size:24 final size:24
Alignment explanation
Indices: 41689--41734 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
41679 AGAATTTTAA
41689 TTAATGATATAATTTTGAAAAAGT
1 TTAATGATATAATTTTGAAAAAGT
* **
41713 TTAATGATTTTTTTTTGAAAAA
1 TTAATGATATAATTTTGAAAAA
41735 TATAGCCCTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.41, C:0.00, G:0.11, T:0.48
Consensus pattern (24 bp):
TTAATGATATAATTTTGAAAAAGT
Found at i:46715 original size:15 final size:16
Alignment explanation
Indices: 46691--46729 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
46681 AACGTCTTCT
46691 AAAATAATTTT-AAGA
1 AAAATAATTTTAAAGA
*
46706 AAAATCATTTTAAAGA
1 AAAATAATTTTAAAGA
46722 AAAA-AATT
1 AAAATAATT
46730 GGGTCTGCGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 13 0.62
16 8 0.38
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.31
Consensus pattern (16 bp):
AAAATAATTTTAAAGA
Found at i:48881 original size:3 final size:3
Alignment explanation
Indices: 48873--48913 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
48863 TTTAGGTTTG
48873 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
48914 GTAAGGGGGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:50729 original size:31 final size:31
Alignment explanation
Indices: 50664--50729 Score: 80
Period size: 31 Copynumber: 2.1 Consensus size: 31
50654 TTAGAGGGTT
* * *
50664 AAACTTGAACTTATAAAATTTCAAGGGGTGC
1 AAACTTGAACTTATAAAATTTCAAGAGATAC
*
50695 AAACTTGAACTTATAAAA-TTCTAGAAGATAC
1 AAACTTGAACTTATAAAATTTCAAG-AGATAC
50726 AAAC
1 AAAC
50730 AAACTTTAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
30 5 0.17
31 25 0.83
ACGTcount: A:0.45, C:0.14, G:0.14, T:0.27
Consensus pattern (31 bp):
AAACTTGAACTTATAAAATTTCAAGAGATAC
Found at i:53655 original size:51 final size:51
Alignment explanation
Indices: 53580--53712 Score: 180
Period size: 51 Copynumber: 2.6 Consensus size: 51
53570 TCCATACTAC
* * * * *
53580 AAAAAA-TGT-ATAACTTAACACATACTTACACTGGTGTAAGTGAATTAAAT
1 AAAAAAGTGTAAT-ACTTAACACATACTTACACCGATGTAAATAAATAAAAT
53630 AAAAAAGTGTAATACTTAACACATACTTACACCGATGTAAATAAATAAAAT
1 AAAAAAGTGTAATACTTAACACATACTTACACCGATGTAAATAAATAAAAT
* *
53681 AAAAAAGTATAACACTTAACACATACTTACAC
1 AAAAAAGTGTAATACTTAACACATACTTACAC
53713 GAATAAAATA
Statistics
Matches: 74, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
50 6 0.08
51 66 0.89
52 2 0.03
ACGTcount: A:0.50, C:0.15, G:0.08, T:0.26
Consensus pattern (51 bp):
AAAAAAGTGTAATACTTAACACATACTTACACCGATGTAAATAAATAAAAT
Found at i:53719 original size:41 final size:41
Alignment explanation
Indices: 53673--53753 Score: 144
Period size: 41 Copynumber: 2.0 Consensus size: 41
53663 GATGTAAATA
*
53673 AATAAAATAAAAAAGTATAACACTTAACACATACTTACACG
1 AATAAAATAAAAAAATATAACACTTAACACATACTTACACG
*
53714 AATAAAATAAAAAAATATAGCACTTAACACATACTTACAC
1 AATAAAATAAAAAAATATAACACTTAACACATACTTACAC
53754 CAGTGTAAGT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.57, C:0.17, G:0.04, T:0.22
Consensus pattern (41 bp):
AATAAAATAAAAAAATATAACACTTAACACATACTTACACG
Found at i:53915 original size:20 final size:19
Alignment explanation
Indices: 53882--53925 Score: 54
Period size: 22 Copynumber: 2.2 Consensus size: 19
53872 AAGTTATTTG
53882 TATATAAATTTTATTAAATATA
1 TATATAAA-TTTA-TAAATA-A
53904 TATATAAA-TTATAAATAA
1 TATATAAATTTATAAATAA
53922 TATA
1 TATA
53926 GAAGTTATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
18 5 0.23
19 6 0.27
20 3 0.14
22 8 0.36
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (19 bp):
TATATAAATTTATAAATAA
Found at i:53933 original size:18 final size:19
Alignment explanation
Indices: 53896--53933 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
53886 TAAATTTTAT
*
53896 TAAATATATATATAAATTA
1 TAAATATATATAGAAATTA
*
53915 TAAATA-ATATAGAAGTTA
1 TAAATATATATAGAAATTA
53933 T
1 T
53934 TTGTGTGAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.39
Consensus pattern (19 bp):
TAAATATATATAGAAATTA
Found at i:55533 original size:32 final size:31
Alignment explanation
Indices: 55497--55563 Score: 98
Period size: 31 Copynumber: 2.1 Consensus size: 31
55487 ATGATTTTAA
55497 AAAATTTAAAAGTTTAGGTACTAACATGGACC
1 AAAA-TTAAAAGTTTAGGTACTAACATGGACC
* * *
55529 AAAATTGATAGTTTAGGTACTAATATGGACC
1 AAAATTAAAAGTTTAGGTACTAACATGGACC
55560 AAAA
1 AAAA
55564 CTGATAGTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
31 28 0.88
32 4 0.12
ACGTcount: A:0.45, C:0.10, G:0.16, T:0.28
Consensus pattern (31 bp):
AAAATTAAAAGTTTAGGTACTAACATGGACC
Found at i:55543 original size:31 final size:31
Alignment explanation
Indices: 55507--55575 Score: 120
Period size: 31 Copynumber: 2.2 Consensus size: 31
55497 AAAATTTAAA
*
55507 AGTTTAGGTACTAACATGGACCAAAATTGAT
1 AGTTTAGGTACTAACATGGACCAAAACTGAT
*
55538 AGTTTAGGTACTAATATGGACCAAAACTGAT
1 AGTTTAGGTACTAACATGGACCAAAACTGAT
55569 AGTTTAG
1 AGTTTAG
55576 CTACCGAACG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.38, C:0.12, G:0.20, T:0.30
Consensus pattern (31 bp):
AGTTTAGGTACTAACATGGACCAAAACTGAT
Found at i:59085 original size:9 final size:9
Alignment explanation
Indices: 59073--59111 Score: 51
Period size: 9 Copynumber: 4.1 Consensus size: 9
59063 AAATTATTAA
59073 ATATTAAAT
1 ATATTAAAT
59082 ATATTATATAT
1 ATATTA-A-AT
*
59093 ATATTATAT
1 ATATTAAAT
59102 ATATTAAAT
1 ATATTAAAT
59111 A
1 A
59112 CATATTTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
9 17 0.65
10 1 0.04
11 8 0.31
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (9 bp):
ATATTAAAT
Found at i:59096 original size:11 final size:11
Alignment explanation
Indices: 59080--59105 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
59070 TAAATATTAA
59080 ATATATTATAT
1 ATATATTATAT
59091 ATATATTATAT
1 ATATATTATAT
59102 ATAT
1 ATAT
59106 TAAATACATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (11 bp):
ATATATTATAT
Found at i:59096 original size:20 final size:20
Alignment explanation
Indices: 59073--59117 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
59063 AAATTATTAA
* *
59073 ATATTAAATATATTATATAT
1 ATATTAAATATATTAAATAC
*
59093 ATATTATATATATTAAATAC
1 ATATTAAATATATTAAATAC
59113 ATATT
1 ATATT
59118 TTAAGTTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (20 bp):
ATATTAAATATATTAAATAC
Found at i:65722 original size:5 final size:5
Alignment explanation
Indices: 65712--65752 Score: 57
Period size: 5 Copynumber: 8.0 Consensus size: 5
65702 AATTTACTCA
65712 AAATT AAATT ATACATT -AATT AAATT AAATT AAATT AAATT
1 AAATT AAATT A-A-ATT AAATT AAATT AAATT AAATT AAATT
65753 CAGACATTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
4 3 0.09
5 26 0.79
6 1 0.03
7 3 0.09
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.41
Consensus pattern (5 bp):
AAATT
Found at i:76595 original size:56 final size:58
Alignment explanation
Indices: 76528--76637 Score: 188
Period size: 60 Copynumber: 1.9 Consensus size: 58
76518 TATATAAAAG
76528 ATAAAAGTTATAAAACGATC-TT-TCGATTATAAAGTAAGTGTGAATATGTATTTTAT
1 ATAAAAGTTATAAAACGATCTTTATCGATTATAAAGTAAGTGTGAATATGTATTTTAT
76584 ATAAAAGTTATAAAACGATCTTTCGATCGATTATAAAGTAAGTGTGAATATGTA
1 ATAAAAGTTATAAAACGATCTTT--ATCGATTATAAAGTAAGTGTGAATATGTA
76638 GTGATGTTTT
Statistics
Matches: 50, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
56 20 0.40
57 2 0.04
60 28 0.56
ACGTcount: A:0.42, C:0.06, G:0.15, T:0.36
Consensus pattern (58 bp):
ATAAAAGTTATAAAACGATCTTTATCGATTATAAAGTAAGTGTGAATATGTATTTTAT
Found at i:79792 original size:24 final size:24
Alignment explanation
Indices: 79765--79871 Score: 97
Period size: 24 Copynumber: 4.5 Consensus size: 24
79755 AAACGGAGAT
*
79765 ATCAGAAATCAAAACATAATTCAG
1 ATCAGAAATCAAAACAGAATTCAG
* * *
79789 ATCAGATATCAGAACAGAATCCAG
1 ATCAGAAATCAAAACAGAATTCAG
* * * * *
79813 GTTAGGAATCAGAACAGATTTCAG
1 ATCAGAAATCAAAACAGAATTCAG
** * *
79837 ATCAGATGTCAAAATAGAATTCAA
1 ATCAGAAATCAAAACAGAATTCAG
79861 ATCAGAAATCA
1 ATCAGAAATCA
79872 GATAAAATAT
Statistics
Matches: 62, Mismatches: 21, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
24 62 1.00
ACGTcount: A:0.48, C:0.16, G:0.15, T:0.21
Consensus pattern (24 bp):
ATCAGAAATCAAAACAGAATTCAG
Found at i:79871 original size:48 final size:48
Alignment explanation
Indices: 79765--79873 Score: 119
Period size: 48 Copynumber: 2.3 Consensus size: 48
79755 AAACGGAGAT
* * * *
79765 ATCAGAAATCAAAACATAATTCAGATCAGATATCAGAACAGAATCCAG
1 ATCAGAAATCAGAACAGAATTCAGATCAGATATCAAAACAGAATCCAA
* * * * * * *
79813 GTTAGGAATCAGAACAGATTTCAGATCAGATGTCAAAATAGAATTCAA
1 ATCAGAAATCAGAACAGAATTCAGATCAGATATCAAAACAGAATCCAA
79861 ATCAGAAATCAGA
1 ATCAGAAATCAGA
79874 TAAAATATTC
Statistics
Matches: 47, Mismatches: 14, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.48, C:0.16, G:0.16, T:0.21
Consensus pattern (48 bp):
ATCAGAAATCAGAACAGAATTCAGATCAGATATCAAAACAGAATCCAA
Found at i:81024 original size:18 final size:18
Alignment explanation
Indices: 81003--81038 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
80993 CTGCCATCCG
*
81003 ATCTTATTATTTAATTCA
1 ATCTTATCATTTAATTCA
*
81021 ATCTTATCATTTACTTCA
1 ATCTTATCATTTAATTCA
81039 GTCCTTTCGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.17, G:0.00, T:0.53
Consensus pattern (18 bp):
ATCTTATCATTTAATTCA
Found at i:82346 original size:7 final size:7
Alignment explanation
Indices: 82334--82372 Score: 60
Period size: 7 Copynumber: 5.3 Consensus size: 7
82324 GGTCAACGTG
82334 GGTCAAC
1 GGTCAAC
82341 GGTCAAC
1 GGTCAAC
82348 GGGTCAAC
1 -GGTCAAC
82356 GGTCAAC
1 GGTCAAC
82363 GGGTCAAC
1 -GGTCAAC
82371 GG
1 GG
82373 GTCGGGTCAA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
7 16 0.53
8 14 0.47
ACGTcount: A:0.26, C:0.26, G:0.36, T:0.13
Consensus pattern (7 bp):
GGTCAAC
Found at i:82353 original size:15 final size:15
Alignment explanation
Indices: 82333--82372 Score: 80
Period size: 15 Copynumber: 2.7 Consensus size: 15
82323 TGGTCAACGT
82333 GGGTCAACGGTCAAC
1 GGGTCAACGGTCAAC
82348 GGGTCAACGGTCAAC
1 GGGTCAACGGTCAAC
82363 GGGTCAACGG
1 GGGTCAACGG
82373 GTCGGGTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.38, T:0.12
Consensus pattern (15 bp):
GGGTCAACGGTCAAC
Found at i:82354 original size:8 final size:8
Alignment explanation
Indices: 82314--82388 Score: 79
Period size: 8 Copynumber: 9.5 Consensus size: 8
82304 TCAAAGTTTT
82314 GGTCAACAG
1 GGTCAAC-G
82323 TGGTCAACGTG
1 -GGTCAAC--G
82334 GGTCAAC-
1 GGTCAACG
82341 GGTCAACG
1 GGTCAACG
82349 GGTCAAC-
1 GGTCAACG
82356 GGTCAACG
1 GGTCAACG
82364 GGTCAACG
1 GGTCAACG
82372 GGT---CG
1 GGTCAACG
82377 GGTCAACG
1 GGTCAACG
82385 GGTC
1 GGTC
82389 GGGTCGGGTC
Statistics
Matches: 58, Mismatches: 1, Indels: 14
0.79 0.01 0.19
Matches are distributed among these distances:
5 5 0.09
7 14 0.24
8 24 0.41
10 14 0.24
11 1 0.02
ACGTcount: A:0.23, C:0.24, G:0.37, T:0.16
Consensus pattern (8 bp):
GGTCAACG
Found at i:82380 original size:13 final size:13
Alignment explanation
Indices: 82362--82437 Score: 71
Period size: 13 Copynumber: 5.5 Consensus size: 13
82352 CAACGGTCAA
82362 CGGGTCAACGGGT
1 CGGGTCAACGGGT
82375 CGGGTCAACGGGTCGGGT
1 CGGGTCAA-----CGGGT
*
82393 CGGGTCAACTGGT
1 CGGGTCAACGGGT
*
82406 CGGGTAAACGGGT
1 CGGGTCAACGGGT
*
82419 CGGGTAAACGGGT
1 CGGGTCAACGGGT
*
82432 CAGGTC
1 CGGGTC
82438 GGGTTATGAC
Statistics
Matches: 53, Mismatches: 5, Indels: 10
0.78 0.07 0.15
Matches are distributed among these distances:
13 40 0.75
18 13 0.25
ACGTcount: A:0.17, C:0.21, G:0.45, T:0.17
Consensus pattern (13 bp):
CGGGTCAACGGGT
Found at i:82393 original size:18 final size:18
Alignment explanation
Indices: 82356--82410 Score: 74
Period size: 18 Copynumber: 2.9 Consensus size: 18
82346 ACGGGTCAAC
82356 GGTCAACGGGTCAACGGGTCG
1 GGTCAACGGGT---CGGGTCG
82377 GGTCAACGGGTCGGGTCG
1 GGTCAACGGGTCGGGTCG
*
82395 GGTCAACTGGTCGGGT
1 GGTCAACGGGTCGGGT
82411 AAACGGGTCG
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
18 22 0.67
21 11 0.33
ACGTcount: A:0.15, C:0.22, G:0.45, T:0.18
Consensus pattern (18 bp):
GGTCAACGGGTCGGGTCG
Found at i:82400 original size:31 final size:31
Alignment explanation
Indices: 82362--82423 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
82352 CAACGGTCAA
*
82362 CGGGTCAACGGGTCGGGTCAACGGGTCGGGT
1 CGGGTCAACGGGTCGGGTAAACGGGTCGGGT
*
82393 CGGGTCAACTGGTCGGGTAAACGGGTCGGGT
1 CGGGTCAACGGGTCGGGTAAACGGGTCGGGT
82424 AAACGGGTCA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.15, C:0.21, G:0.47, T:0.18
Consensus pattern (31 bp):
CGGGTCAACGGGTCGGGTAAACGGGTCGGGT
Found at i:82460 original size:9 final size:9
Alignment explanation
Indices: 82446--82480 Score: 70
Period size: 9 Copynumber: 3.9 Consensus size: 9
82436 TCGGGTTATG
82446 ACCGGTCAA
1 ACCGGTCAA
82455 ACCGGTCAA
1 ACCGGTCAA
82464 ACCGGTCAA
1 ACCGGTCAA
82473 ACCGGTCA
1 ACCGGTCA
82481 CTTTTGTCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.31, C:0.34, G:0.23, T:0.11
Consensus pattern (9 bp):
ACCGGTCAA
Found at i:84591 original size:48 final size:48
Alignment explanation
Indices: 84486--84593 Score: 119
Period size: 48 Copynumber: 2.3 Consensus size: 48
84476 AAACGGAGAT
* * *
84486 ATCAGAAATCA-AACATAATTCAGATCAGATATCAGAACAGAATCCAG
1 ATCAGAAATCAGAACAGAATTCAGATCAGATATCAAAACAGAATCCAA
* * * * * * *
84533 GTTAGGAATCAGAACAGATTTCAGATCAGATGTCAAAATAGAATTCAA
1 ATCAGAAATCAGAACAGAATTCAGATCAGATATCAAAACAGAATCCAA
84581 ATCAGAAATCAGA
1 ATCAGAAATCAGA
84594 TAAAATATTC
Statistics
Matches: 47, Mismatches: 13, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
47 8 0.17
48 39 0.83
ACGTcount: A:0.47, C:0.16, G:0.16, T:0.21
Consensus pattern (48 bp):
ATCAGAAATCAGAACAGAATTCAGATCAGATATCAAAACAGAATCCAA
Found at i:85740 original size:18 final size:18
Alignment explanation
Indices: 85719--85754 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
85709 CTGCCATCCG
*
85719 ATCTTATTATTTAATTCA
1 ATCTTATCATTTAATTCA
*
85737 ATCTTATCATTTACTTCA
1 ATCTTATCATTTAATTCA
85755 GTCCTTTCGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.17, G:0.00, T:0.53
Consensus pattern (18 bp):
ATCTTATCATTTAATTCA
Found at i:87063 original size:7 final size:7
Alignment explanation
Indices: 87051--87089 Score: 60
Period size: 7 Copynumber: 5.3 Consensus size: 7
87041 GGTCAACGTG
87051 GGTCAAC
1 GGTCAAC
87058 GGTCAAC
1 GGTCAAC
87065 GGGTCAAC
1 -GGTCAAC
87073 GGTCAAC
1 GGTCAAC
87080 GGGTCAAC
1 -GGTCAAC
87088 GG
1 GG
87090 GTCGGGTCAA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
7 16 0.53
8 14 0.47
ACGTcount: A:0.26, C:0.26, G:0.36, T:0.13
Consensus pattern (7 bp):
GGTCAAC
Found at i:87070 original size:15 final size:15
Alignment explanation
Indices: 87050--87089 Score: 80
Period size: 15 Copynumber: 2.7 Consensus size: 15
87040 TGGTCAACGT
87050 GGGTCAACGGTCAAC
1 GGGTCAACGGTCAAC
87065 GGGTCAACGGTCAAC
1 GGGTCAACGGTCAAC
87080 GGGTCAACGG
1 GGGTCAACGG
87090 GTCGGGTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.38, T:0.12
Consensus pattern (15 bp):
GGGTCAACGGTCAAC
Found at i:87071 original size:8 final size:8
Alignment explanation
Indices: 87031--87105 Score: 79
Period size: 8 Copynumber: 9.5 Consensus size: 8
87021 TCAAAGTTTT
87031 GGTCAACAG
1 GGTCAAC-G
87040 TGGTCAACGTG
1 -GGTCAAC--G
87051 GGTCAAC-
1 GGTCAACG
87058 GGTCAACG
1 GGTCAACG
87066 GGTCAAC-
1 GGTCAACG
87073 GGTCAACG
1 GGTCAACG
87081 GGTCAACG
1 GGTCAACG
87089 GGT---CG
1 GGTCAACG
87094 GGTCAACG
1 GGTCAACG
87102 GGTC
1 GGTC
87106 GGGTCGGGTC
Statistics
Matches: 58, Mismatches: 1, Indels: 14
0.79 0.01 0.19
Matches are distributed among these distances:
5 5 0.09
7 14 0.24
8 24 0.41
10 14 0.24
11 1 0.02
ACGTcount: A:0.23, C:0.24, G:0.37, T:0.16
Consensus pattern (8 bp):
GGTCAACG
Found at i:87097 original size:13 final size:13
Alignment explanation
Indices: 87079--87154 Score: 71
Period size: 13 Copynumber: 5.5 Consensus size: 13
87069 CAACGGTCAA
87079 CGGGTCAACGGGT
1 CGGGTCAACGGGT
87092 CGGGTCAACGGGTCGGGT
1 CGGGTCAA-----CGGGT
*
87110 CGGGTCAACTGGT
1 CGGGTCAACGGGT
*
87123 CGGGTAAACGGGT
1 CGGGTCAACGGGT
*
87136 CGGGTAAACGGGT
1 CGGGTCAACGGGT
*
87149 CAGGTC
1 CGGGTC
87155 GGGTTATGAC
Statistics
Matches: 53, Mismatches: 5, Indels: 10
0.78 0.07 0.15
Matches are distributed among these distances:
13 40 0.75
18 13 0.25
ACGTcount: A:0.17, C:0.21, G:0.45, T:0.17
Consensus pattern (13 bp):
CGGGTCAACGGGT
Found at i:87110 original size:18 final size:18
Alignment explanation
Indices: 87073--87127 Score: 74
Period size: 18 Copynumber: 2.9 Consensus size: 18
87063 ACGGGTCAAC
87073 GGTCAACGGGTCAACGGGTCG
1 GGTCAACGGGT---CGGGTCG
87094 GGTCAACGGGTCGGGTCG
1 GGTCAACGGGTCGGGTCG
*
87112 GGTCAACTGGTCGGGT
1 GGTCAACGGGTCGGGT
87128 AAACGGGTCG
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
18 22 0.67
21 11 0.33
ACGTcount: A:0.15, C:0.22, G:0.45, T:0.18
Consensus pattern (18 bp):
GGTCAACGGGTCGGGTCG
Found at i:87117 original size:31 final size:31
Alignment explanation
Indices: 87079--87140 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
87069 CAACGGTCAA
*
87079 CGGGTCAACGGGTCGGGTCAACGGGTCGGGT
1 CGGGTCAACGGGTCGGGTAAACGGGTCGGGT
*
87110 CGGGTCAACTGGTCGGGTAAACGGGTCGGGT
1 CGGGTCAACGGGTCGGGTAAACGGGTCGGGT
87141 AAACGGGTCA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.15, C:0.21, G:0.47, T:0.18
Consensus pattern (31 bp):
CGGGTCAACGGGTCGGGTAAACGGGTCGGGT
Found at i:89242 original size:24 final size:24
Alignment explanation
Indices: 89215--89321 Score: 97
Period size: 24 Copynumber: 4.5 Consensus size: 24
89205 AAACGGAGAT
*
89215 ATCAGAAATCAAAACATAATTCAG
1 ATCAGAAATCAAAACAGAATTCAG
* * *
89239 ATCAGATATCAGAACAGAATCCAG
1 ATCAGAAATCAAAACAGAATTCAG
* * * * *
89263 GTTAGGAATCAGAACAGATTTCAG
1 ATCAGAAATCAAAACAGAATTCAG
** * *
89287 ATCAGATGTCAAAATAGAATTCAA
1 ATCAGAAATCAAAACAGAATTCAG
89311 ATCAGAAATCA
1 ATCAGAAATCA
89322 GATAAAATAT
Statistics
Matches: 62, Mismatches: 21, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
24 62 1.00
ACGTcount: A:0.48, C:0.16, G:0.15, T:0.21
Consensus pattern (24 bp):
ATCAGAAATCAAAACAGAATTCAG
Found at i:89321 original size:48 final size:48
Alignment explanation
Indices: 89215--89323 Score: 119
Period size: 48 Copynumber: 2.3 Consensus size: 48
89205 AAACGGAGAT
* * * *
89215 ATCAGAAATCAAAACATAATTCAGATCAGATATCAGAACAGAATCCAG
1 ATCAGAAATCAGAACAGAATTCAGATCAGATATCAAAACAGAATCCAA
* * * * * * *
89263 GTTAGGAATCAGAACAGATTTCAGATCAGATGTCAAAATAGAATTCAA
1 ATCAGAAATCAGAACAGAATTCAGATCAGATATCAAAACAGAATCCAA
89311 ATCAGAAATCAGA
1 ATCAGAAATCAGA
89324 TAAAATATTC
Statistics
Matches: 47, Mismatches: 14, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.48, C:0.16, G:0.16, T:0.21
Consensus pattern (48 bp):
ATCAGAAATCAGAACAGAATTCAGATCAGATATCAAAACAGAATCCAA
Found at i:90474 original size:18 final size:18
Alignment explanation
Indices: 90453--90488 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
90443 CTGCCATCCG
*
90453 ATCTTATTATTTAATTCA
1 ATCTTATCATTTAATTCA
*
90471 ATCTTATCATTTACTTCA
1 ATCTTATCATTTAATTCA
90489 GTCCTTTCGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.17, G:0.00, T:0.53
Consensus pattern (18 bp):
ATCTTATCATTTAATTCA
Found at i:91795 original size:7 final size:7
Alignment explanation
Indices: 91783--91821 Score: 60
Period size: 7 Copynumber: 5.3 Consensus size: 7
91773 GGTCAACGTG
91783 GGTCAAC
1 GGTCAAC
91790 GGTCAAC
1 GGTCAAC
91797 GGGTCAAC
1 -GGTCAAC
91805 GGTCAAC
1 GGTCAAC
91812 GGGTCAAC
1 -GGTCAAC
91820 GG
1 GG
91822 GTCGGGTCAA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
7 16 0.53
8 14 0.47
ACGTcount: A:0.26, C:0.26, G:0.36, T:0.13
Consensus pattern (7 bp):
GGTCAAC
Found at i:91802 original size:15 final size:15
Alignment explanation
Indices: 91782--91821 Score: 80
Period size: 15 Copynumber: 2.7 Consensus size: 15
91772 TGGTCAACGT
91782 GGGTCAACGGTCAAC
1 GGGTCAACGGTCAAC
91797 GGGTCAACGGTCAAC
1 GGGTCAACGGTCAAC
91812 GGGTCAACGG
1 GGGTCAACGG
91822 GTCGGGTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.38, T:0.12
Consensus pattern (15 bp):
GGGTCAACGGTCAAC
Found at i:91803 original size:8 final size:8
Alignment explanation
Indices: 91763--91837 Score: 79
Period size: 8 Copynumber: 9.5 Consensus size: 8
91753 TCAAAGTTTT
91763 GGTCAACAG
1 GGTCAAC-G
91772 TGGTCAACGTG
1 -GGTCAAC--G
91783 GGTCAAC-
1 GGTCAACG
91790 GGTCAACG
1 GGTCAACG
91798 GGTCAAC-
1 GGTCAACG
91805 GGTCAACG
1 GGTCAACG
91813 GGTCAACG
1 GGTCAACG
91821 GGT---CG
1 GGTCAACG
91826 GGTCAACG
1 GGTCAACG
91834 GGTC
1 GGTC
91838 GGGTCGGGTC
Statistics
Matches: 58, Mismatches: 1, Indels: 14
0.79 0.01 0.19
Matches are distributed among these distances:
5 5 0.09
7 14 0.24
8 24 0.41
10 14 0.24
11 1 0.02
ACGTcount: A:0.23, C:0.24, G:0.37, T:0.16
Consensus pattern (8 bp):
GGTCAACG
Found at i:91829 original size:13 final size:13
Alignment explanation
Indices: 91811--91886 Score: 71
Period size: 13 Copynumber: 5.5 Consensus size: 13
91801 CAACGGTCAA
91811 CGGGTCAACGGGT
1 CGGGTCAACGGGT
91824 CGGGTCAACGGGTCGGGT
1 CGGGTCAA-----CGGGT
*
91842 CGGGTCAACTGGT
1 CGGGTCAACGGGT
*
91855 CGGGTAAACGGGT
1 CGGGTCAACGGGT
*
91868 CGGGTAAACGGGT
1 CGGGTCAACGGGT
*
91881 CAGGTC
1 CGGGTC
91887 GGGTTATGAC
Statistics
Matches: 53, Mismatches: 5, Indels: 10
0.78 0.07 0.15
Matches are distributed among these distances:
13 40 0.75
18 13 0.25
ACGTcount: A:0.17, C:0.21, G:0.45, T:0.17
Consensus pattern (13 bp):
CGGGTCAACGGGT
Found at i:91842 original size:18 final size:18
Alignment explanation
Indices: 91805--91859 Score: 74
Period size: 18 Copynumber: 2.9 Consensus size: 18
91795 ACGGGTCAAC
91805 GGTCAACGGGTCAACGGGTCG
1 GGTCAACGGGT---CGGGTCG
91826 GGTCAACGGGTCGGGTCG
1 GGTCAACGGGTCGGGTCG
*
91844 GGTCAACTGGTCGGGT
1 GGTCAACGGGTCGGGT
91860 AAACGGGTCG
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
18 22 0.67
21 11 0.33
ACGTcount: A:0.15, C:0.22, G:0.45, T:0.18
Consensus pattern (18 bp):
GGTCAACGGGTCGGGTCG
Found at i:91849 original size:31 final size:31
Alignment explanation
Indices: 91811--91872 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
91801 CAACGGTCAA
*
91811 CGGGTCAACGGGTCGGGTCAACGGGTCGGGT
1 CGGGTCAACGGGTCGGGTAAACGGGTCGGGT
*
91842 CGGGTCAACTGGTCGGGTAAACGGGTCGGGT
1 CGGGTCAACGGGTCGGGTAAACGGGTCGGGT
91873 AAACGGGTCA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.15, C:0.21, G:0.47, T:0.18
Consensus pattern (31 bp):
CGGGTCAACGGGTCGGGTAAACGGGTCGGGT
Found at i:93971 original size:24 final size:24
Alignment explanation
Indices: 93944--94046 Score: 89
Period size: 24 Copynumber: 4.3 Consensus size: 24
93934 AAACGGAGAT
*
93944 ATCAGAAATCAAAACATAATTCAG
1 ATCAGAAATCAAAACAGAATTCAG
* * *
93968 ATCAGATATCAGAACAGAATCCAG
1 ATCAGAAATCAAAACAGAATTCAG
* * * * *
93992 GTTAGGAATCAGAACAGATTTCAG
1 ATCAGAAATCAAAACAGAATTCAG
** * *
94016 ATCAGATGTCAAAATAGAATTCAA
1 ATCAGAAATCAAAACAGAATTCAG
94040 ATCAGAA
1 ATCAGAA
94047 TCAGATAAAA
Statistics
Matches: 59, Mismatches: 20, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
24 59 1.00
ACGTcount: A:0.48, C:0.16, G:0.16, T:0.21
Consensus pattern (24 bp):
ATCAGAAATCAAAACAGAATTCAG
Found at i:95201 original size:18 final size:18
Alignment explanation
Indices: 95180--95215 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
95170 CTGCCATCCG
*
95180 ATCTTATTATTTAATTCA
1 ATCTTATCATTTAATTCA
*
95198 ATCTTATCATTTACTTCA
1 ATCTTATCATTTAATTCA
95216 GTCCTTTCGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.17, G:0.00, T:0.53
Consensus pattern (18 bp):
ATCTTATCATTTAATTCA
Found at i:96524 original size:7 final size:7
Alignment explanation
Indices: 96512--96550 Score: 60
Period size: 7 Copynumber: 5.3 Consensus size: 7
96502 GGTCAACGTG
96512 GGTCAAC
1 GGTCAAC
96519 GGTCAAC
1 GGTCAAC
96526 GGGTCAAC
1 -GGTCAAC
96534 GGTCAAC
1 GGTCAAC
96541 GGGTCAAC
1 -GGTCAAC
96549 GG
1 GG
96551 GTCGGGTCAA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
7 16 0.53
8 14 0.47
ACGTcount: A:0.26, C:0.26, G:0.36, T:0.13
Consensus pattern (7 bp):
GGTCAAC
Found at i:96531 original size:15 final size:15
Alignment explanation
Indices: 96511--96550 Score: 80
Period size: 15 Copynumber: 2.7 Consensus size: 15
96501 TGGTCAACGT
96511 GGGTCAACGGTCAAC
1 GGGTCAACGGTCAAC
96526 GGGTCAACGGTCAAC
1 GGGTCAACGGTCAAC
96541 GGGTCAACGG
1 GGGTCAACGG
96551 GTCGGGTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.38, T:0.12
Consensus pattern (15 bp):
GGGTCAACGGTCAAC
Found at i:96532 original size:8 final size:8
Alignment explanation
Indices: 96492--96566 Score: 79
Period size: 8 Copynumber: 9.5 Consensus size: 8
96482 TCAAAGTTTT
96492 GGTCAACAG
1 GGTCAAC-G
96501 TGGTCAACGTG
1 -GGTCAAC--G
96512 GGTCAAC-
1 GGTCAACG
96519 GGTCAACG
1 GGTCAACG
96527 GGTCAAC-
1 GGTCAACG
96534 GGTCAACG
1 GGTCAACG
96542 GGTCAACG
1 GGTCAACG
96550 GGT---CG
1 GGTCAACG
96555 GGTCAACG
1 GGTCAACG
96563 GGTC
1 GGTC
96567 GGGTCGGGTC
Statistics
Matches: 58, Mismatches: 1, Indels: 14
0.79 0.01 0.19
Matches are distributed among these distances:
5 5 0.09
7 14 0.24
8 24 0.41
10 14 0.24
11 1 0.02
ACGTcount: A:0.23, C:0.24, G:0.37, T:0.16
Consensus pattern (8 bp):
GGTCAACG
Found at i:96558 original size:13 final size:13
Alignment explanation
Indices: 96540--96615 Score: 71
Period size: 13 Copynumber: 5.5 Consensus size: 13
96530 CAACGGTCAA
96540 CGGGTCAACGGGT
1 CGGGTCAACGGGT
96553 CGGGTCAACGGGTCGGGT
1 CGGGTCAA-----CGGGT
*
96571 CGGGTCAACTGGT
1 CGGGTCAACGGGT
*
96584 CGGGTAAACGGGT
1 CGGGTCAACGGGT
*
96597 CGGGTAAACGGGT
1 CGGGTCAACGGGT
*
96610 CAGGTC
1 CGGGTC
96616 GGGTTATGAC
Statistics
Matches: 53, Mismatches: 5, Indels: 10
0.78 0.07 0.15
Matches are distributed among these distances:
13 40 0.75
18 13 0.25
ACGTcount: A:0.17, C:0.21, G:0.45, T:0.17
Consensus pattern (13 bp):
CGGGTCAACGGGT
Found at i:96571 original size:18 final size:18
Alignment explanation
Indices: 96534--96588 Score: 74
Period size: 18 Copynumber: 2.9 Consensus size: 18
96524 ACGGGTCAAC
96534 GGTCAACGGGTCAACGGGTCG
1 GGTCAACGGGT---CGGGTCG
96555 GGTCAACGGGTCGGGTCG
1 GGTCAACGGGTCGGGTCG
*
96573 GGTCAACTGGTCGGGT
1 GGTCAACGGGTCGGGT
96589 AAACGGGTCG
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
18 22 0.67
21 11 0.33
ACGTcount: A:0.15, C:0.22, G:0.45, T:0.18
Consensus pattern (18 bp):
GGTCAACGGGTCGGGTCG
Found at i:96578 original size:31 final size:31
Alignment explanation
Indices: 96540--96601 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
96530 CAACGGTCAA
*
96540 CGGGTCAACGGGTCGGGTCAACGGGTCGGGT
1 CGGGTCAACGGGTCGGGTAAACGGGTCGGGT
*
96571 CGGGTCAACTGGTCGGGTAAACGGGTCGGGT
1 CGGGTCAACGGGTCGGGTAAACGGGTCGGGT
96602 AAACGGGTCA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.15, C:0.21, G:0.47, T:0.18
Consensus pattern (31 bp):
CGGGTCAACGGGTCGGGTAAACGGGTCGGGT
Found at i:99960 original size:43 final size:42
Alignment explanation
Indices: 99877--99996 Score: 141
Period size: 43 Copynumber: 2.8 Consensus size: 42
99867 AGGATCTCTA
* * * * * *
99877 ATTTTTTATTTTTATATTTGAGTCCTTCAATTTTTTTAATTTT
1 ATTTTTTATCTTTATAATTGAGCCCTT-AAATTTTATAATTCT
*
99920 ATTTTTTATCTTTATAATTGATGCCCCTAAATTTTATAATTCT
1 ATTTTTTATCTTTATAATTGA-GCCCTTAAATTTTATAATTCT
* *
99963 ACTTTTTATCTTTATAATTGAGGCCTTAAATTTT
1 ATTTTTTATCTTTATAATTGAGCCCTTAAATTTT
99997 TTTTCCCAAT
Statistics
Matches: 66, Mismatches: 10, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
42 11 0.17
43 51 0.77
44 4 0.06
ACGTcount: A:0.25, C:0.11, G:0.06, T:0.58
Consensus pattern (42 bp):
ATTTTTTATCTTTATAATTGAGCCCTTAAATTTTATAATTCT
Found at i:100101 original size:42 final size:42
Alignment explanation
Indices: 100055--100140 Score: 102
Period size: 42 Copynumber: 2.0 Consensus size: 42
100045 TTTCAATTTT
* *
100055 ACATTGCACCTTTATAATCGA-GCTCCTAATTTTTTCAACCTC
1 ACATTGCACATTTATAATCGAGGCACCTAATTTTTT-AACCTC
** * *
100097 ACATTTTACATTTATAATTGAGGCACCTAATTTTTTAATCTC
1 ACATTGCACATTTATAATCGAGGCACCTAATTTTTTAACCTC
100139 AC
1 AC
100141 TATAAGGATG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
42 24 0.65
43 13 0.35
ACGTcount: A:0.29, C:0.23, G:0.07, T:0.41
Consensus pattern (42 bp):
ACATTGCACATTTATAATCGAGGCACCTAATTTTTTAACCTC
Found at i:100126 original size:43 final size:42
Alignment explanation
Indices: 100003--100363 Score: 145
Period size: 43 Copynumber: 8.7 Consensus size: 42
99993 TTTTTTTTCC
* * *
100003 CAATCTCACTTCTTTACATTTATAATTGATGAACCTATTTTTTTT
1 CAATCTCACAT-TTTACATTTATAATTGA-GCACCTA-ATTTTTT
* * ** * * *
100048 CAATTTTACATTGCACCTTTATAATCGAGCTCCTAATTTTTT
1 CAATCTCACATTTTACATTTATAATTGAGCACCTAATTTTTT
*
100090 CAACCTCACATTTTACATTTATAATTGAGGCACCTAATTTTTT
1 CAATCTCACATTTTACATTTATAATTGA-GCACCTAATTTTTT
*
100133 -AATCT--C-----AC---TATAA-GGATGC-CCATAATTTTTT
1 CAATCTCACATTTTACATTTATAATTGA-GCACC-TAATTTTTT
* * * *
100164 CAATCTCACTTTTTAC-TTAAATAATTTAGGCCCCTAA-TTTTT
1 CAATCTCACATTTTACATT-TATAATTGA-GCACCTAATTTTTT
* **
100206 -ATTCTCATTTTTTATC-TTTATAATTGAGGC-CCTTAATTTTTT
1 CAATCTCACATTTTA-CATTTATAATTGA-GCACC-TAATTTTTT
* * *
100248 CAATCTCACTTTTTAC-TTATATAATTTAGACCCCTAATTTTTT
1 CAATCTCACATTTTACATT-TATAATTGAG-CACCTAATTTTTT
* * *
100291 TAATATCA-ATTTTTA-ACTTTAAAATTGAGGTC-CCTAATTTTTT
1 CAATCTCACA-TTTTACA-TTTATAATTGA-G-CACCTAATTTTTT
* * * *
100334 TAATCTTACTTTTTTACCTTTATAATTGAG
1 CAATCTCAC-ATTTTACATTTATAATTGAG
100364 GTTTCTTTTA
Statistics
Matches: 244, Mismatches: 43, Indels: 60
0.70 0.12 0.17
Matches are distributed among these distances:
30 2 0.01
31 13 0.05
32 10 0.04
34 1 0.00
35 2 0.01
39 2 0.01
40 3 0.01
41 25 0.10
42 52 0.21
43 90 0.37
44 36 0.15
45 8 0.03
ACGTcount: A:0.28, C:0.18, G:0.06, T:0.48
Consensus pattern (42 bp):
CAATCTCACATTTTACATTTATAATTGAGCACCTAATTTTTT
Found at i:100218 original size:41 final size:42
Alignment explanation
Indices: 100150--100360 Score: 187
Period size: 43 Copynumber: 4.9 Consensus size: 42
100140 CTATAAGGAT
* *
100150 GCCCATAATTTTTTCAATCTCACTTTTTACTTAAATAATTTAG
1 GCCCCTAA-TTTTTCAATCTCACTTTTTACTTATATAATTTAG
* * *
100193 GCCCCTAATTTTT-ATTCTCATTTTTTATCTT-TATAATTGAG
1 GCCCCTAATTTTTCAATCTCACTTTTTA-CTTATATAATTTAG
*
100234 GCCCTTAATTTTTTCAATCTCACTTTTTACTTATATAATTTAG
1 GCCCCTAA-TTTTTCAATCTCACTTTTTACTTATATAATTTAG
* * * * * *
100277 ACCCCTAATTTTTTTAATATCAATTTTTAACTT-TAAAATTGAG
1 GCCCCTAA-TTTTTCAATCTCACTTTTT-ACTTATATAATTTAG
* * *
100320 GTCCCTAATTTTTTTAATCTTACTTTTTTACCTT-TATAATT
1 GCCCCTAA-TTTTTCAATCTCAC-TTTTTA-CTTATATAATT
100361 GAGGTTTCTT
Statistics
Matches: 139, Mismatches: 22, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
41 27 0.19
42 16 0.12
43 78 0.56
44 18 0.13
ACGTcount: A:0.27, C:0.17, G:0.05, T:0.51
Consensus pattern (42 bp):
GCCCCTAATTTTTCAATCTCACTTTTTACTTATATAATTTAG
Found at i:100248 original size:84 final size:84
Alignment explanation
Indices: 100150--100347 Score: 272
Period size: 86 Copynumber: 2.3 Consensus size: 84
100140 CTATAAGGAT
* * * *
100150 GCCCATAATTTTTTCAATCTCACTTTTTACTTAAATAATTTAGGCCCCTAA-TTTTTATTCTCAT
1 GCCC-TAATTTTTTCAATCTCACTTTTTACTTAAATAATTTAGACCCCTAATTTTTTAATATCAA
* *
100214 TTTTTATCTTTATAATTGAG
65 TTTTTAACTTTAAAATTGAG
*
100234 GCCCTTAATTTTTTCAATCTCACTTTTTACTTATATAATTTAGACCCCTAATTTTTTTAATATCA
1 GCCC-TAATTTTTTCAATCTCACTTTTTACTTAAATAATTTAGACCCCTAA-TTTTTTAATATCA
100299 ATTTTTAACTTTAAAATTGAG
64 ATTTTTAACTTTAAAATTGAG
* *
100320 GTCCCTAATTTTTTTAATCTTACTTTTT
1 G-CCCTAATTTTTTCAATCTCACTTTTT
100348 TACCTTTATA
Statistics
Matches: 101, Mismatches: 10, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
84 48 0.48
86 50 0.50
87 3 0.03
ACGTcount: A:0.27, C:0.17, G:0.05, T:0.51
Consensus pattern (84 bp):
GCCCTAATTTTTTCAATCTCACTTTTTACTTAAATAATTTAGACCCCTAATTTTTTAATATCAAT
TTTTAACTTTAAAATTGAG
Found at i:100346 original size:86 final size:84
Alignment explanation
Indices: 100150--100360 Score: 273
Period size: 84 Copynumber: 2.5 Consensus size: 84
100140 CTATAAGGAT
* * * * * *
100150 GCCCATAATTTTTTCAATCTCACTTTTTACTTAAATAATTTAGGCCCCTAATTTTTATTCTCATT
1 GCCCTTAATTTTTTCAATCTCACTTTTTACTTATATAATTTAGACCCCTAATTTTTAATATCAAT
* *
100215 TTTTATCTTTATAATTGAG
66 TTTTAACTTTAAAATTGAG
100234 GCCCTTAATTTTTTCAATCTCACTTTTTACTTATATAATTTAGACCCCTAATTTTTTTAATATCA
1 GCCCTTAATTTTTTCAATCTCACTTTTTACTTATATAATTTAGACCCCTAA--TTTTTAATATCA
100299 ATTTTTAACTTTAAAATTGAG
64 ATTTTTAACTTTAAAATTGAG
* *
100320 GTCCC-TAATTTTTTTAATCTTACTTTTTTACCTT-TATAATT
1 G-CCCTTAATTTTTTCAATCTCAC-TTTTTA-CTTATATAATT
100361 GAGGTTTCTT
Statistics
Matches: 112, Mismatches: 10, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
84 48 0.43
86 45 0.40
87 16 0.14
88 3 0.03
ACGTcount: A:0.27, C:0.17, G:0.05, T:0.51
Consensus pattern (84 bp):
GCCCTTAATTTTTTCAATCTCACTTTTTACTTATATAATTTAGACCCCTAATTTTTAATATCAAT
TTTTAACTTTAAAATTGAG
Found at i:101570 original size:20 final size:20
Alignment explanation
Indices: 101540--101701 Score: 94
Period size: 20 Copynumber: 8.0 Consensus size: 20
101530 GTTTCCAGAT
*
101540 TCGCAACGCGATTCTGACTA
1 TCGCAATGCGATTCTGACTA
* ** *
101560 TCGCATTGCGATT-TTCCAAA
1 TCGCAATGCGATTCTGAC-TA
** *
101580 TTCGCGTTGCGATTTTCCGACTA
1 -TCGCAATGCGA--TTCTGACTA
* * *
101603 TCGCAATGCGAATATGTA-AA
1 TCGCAATGCGATTCTG-ACTA
* *
101623 TCGCAATGCGATTATTACTA
1 TCGCAATGCGATTCTGACTA
* *
101643 TCGCAACGAGATTCTGACTA
1 TCGCAATGCGATTCTGACTA
* *
101663 TCGCAACGAGATTCTGACTA
1 TCGCAATGCGATTCTGACTA
**
101683 TCGCAACACGATTCTGACT
1 TCGCAATGCGATTCTGACT
101702 GTCACAACAC
Statistics
Matches: 110, Mismatches: 25, Indels: 14
0.74 0.17 0.09
Matches are distributed among these distances:
19 3 0.03
20 83 0.75
21 11 0.10
22 9 0.08
23 3 0.03
24 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.30
Consensus pattern (20 bp):
TCGCAATGCGATTCTGACTA
Found at i:101612 original size:22 final size:22
Alignment explanation
Indices: 101555--101613 Score: 75
Period size: 21 Copynumber: 2.7 Consensus size: 22
101545 ACGCGATTCT
101555 GACTATCGCATTGCGATTTTCC
1 GACTATCGCATTGCGATTTTCC
* * *
101577 AAAT-TCGCGTTGCGATTTTCC
1 GACTATCGCATTGCGATTTTCC
*
101598 GACTATCGCAATGCGA
1 GACTATCGCATTGCGA
101614 ATATGTAAAT
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
21 18 0.62
22 11 0.38
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.32
Consensus pattern (22 bp):
GACTATCGCATTGCGATTTTCC
Found at i:101666 original size:40 final size:40
Alignment explanation
Indices: 101622--101701 Score: 108
Period size: 40 Copynumber: 2.0 Consensus size: 40
101612 GAATATGTAA
* * *
101622 ATCGCAATGCGATTATTACTATCGCAACGA-GATTCTGACT
1 ATCGCAACGAGATTATGACTATCGCAAC-ACGATTCTGACT
*
101662 ATCGCAACGAGATTCTGACTATCGCAACACGATTCTGACT
1 ATCGCAACGAGATTATGACTATCGCAACACGATTCTGACT
101702 GTCACAACAC
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.03
40 34 0.97
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (40 bp):
ATCGCAACGAGATTATGACTATCGCAACACGATTCTGACT
Found at i:101709 original size:20 final size:20
Alignment explanation
Indices: 101639--101711 Score: 96
Period size: 20 Copynumber: 3.6 Consensus size: 20
101629 TGCGATTATT
101639 ACTATCGCAACGA-GATTCTG
1 ACTATCGCAAC-ACGATTCTG
101659 ACTATCGCAACGA-GATTCTG
1 ACTATCGCAAC-ACGATTCTG
101679 ACTATCGCAACACGATTCTG
1 ACTATCGCAACACGATTCTG
* *
101699 ACTGTCACAACAC
1 ACTATCGCAACAC
101712 TGAATTTCAA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
19 1 0.02
20 49 0.98
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.23
Consensus pattern (20 bp):
ACTATCGCAACACGATTCTG
Found at i:102561 original size:24 final size:24
Alignment explanation
Indices: 102529--102575 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
102519 GTATTCAAAA
102529 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATCTTGGTCAATACCCGGAC
*
102553 TTTGATCTTGGTCAATACTCGGA
1 TTTGATCTTGGTCAATACCCGGA
102576 TTTTAATGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.36
Consensus pattern (24 bp):
TTTGATCTTGGTCAATACCCGGAC
Found at i:104854 original size:18 final size:18
Alignment explanation
Indices: 104831--104865 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
104821 AGAAAAAGGC
*
104831 AATCAAAATCTCAATCAA
1 AATCAAAATCCCAATCAA
104849 AATCAAAATCCCAATCA
1 AATCAAAATCCCAATCA
104866 CAACCAGCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.54, C:0.26, G:0.00, T:0.20
Consensus pattern (18 bp):
AATCAAAATCCCAATCAA
Found at i:105177 original size:140 final size:140
Alignment explanation
Indices: 104925--105194 Score: 513
Period size: 140 Copynumber: 1.9 Consensus size: 140
104915 AAACGTTGTA
*
104925 TTATGTGTAAACTTTTAACATTTTCAGTTAGGCATGTATTATTAACTTGAGTTTGAACATTGCTA
1 TTATGTGTAAACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTTGAGTTTGAACATTGCTA
*
104990 TGATATGTTCAGTTGTTATCACTTATTACACATTCATTTGAATATCGCAACGCGAATTTGACTAT
66 TAATATGTTCAGTTGTTATCACTTATTACACATTCATTTGAATATCGCAACGCGAATTTGACTAT
105055 TATGTGTATT
131 TATGTGTATT
105065 TTATGTGTAAACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTTGAGTTTGAACATTGCTA
1 TTATGTGTAAACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTTGAGTTTGAACATTGCTA
*
105130 TAATATGTTCAGTTGTTATCACTTATTACACATTCATTTGAATATCGCAATGCGAATTTGACTAT
66 TAATATGTTCAGTTGTTATCACTTATTACACATTCATTTGAATATCGCAACGCGAATTTGACTAT
105195 CGCAACGCGA
Statistics
Matches: 127, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
140 127 1.00
ACGTcount: A:0.29, C:0.13, G:0.15, T:0.43
Consensus pattern (140 bp):
TTATGTGTAAACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTTGAGTTTGAACATTGCTA
TAATATGTTCAGTTGTTATCACTTATTACACATTCATTTGAATATCGCAACGCGAATTTGACTAT
TATGTGTATT
Found at i:105190 original size:20 final size:20
Alignment explanation
Indices: 105165--105381 Score: 335
Period size: 20 Copynumber: 10.8 Consensus size: 20
105155 TTACACATTC
* *
105165 ATTTGAATATCGCAATGCGA
1 ATTTGACTATCGCAACGCGA
105185 ATTTGACTATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
*
105205 ATTTGATTATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
* *
105225 ATTTGACTATAGCAACACGA
1 ATTTGACTATCGCAACGCGA
105245 ATTTGACTATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
* * *
105265 ATTTGATTATCGCAACGGGT
1 ATTTGACTATCGCAACGCGA
105285 ATTTGACTATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
105305 ATTTGACTATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
105325 ATTTGACTATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
* * *
105345 ATTTGATTATCGCAACGGGT
1 ATTTGACTATCGCAACGCGA
105365 ATTTGACTATCGCAACG
1 ATTTGACTATCGCAACG
105382 AGAAAATCGC
Statistics
Matches: 179, Mismatches: 18, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 179 1.00
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.28
Consensus pattern (20 bp):
ATTTGACTATCGCAACGCGA
Found at i:105618 original size:14 final size:13
Alignment explanation
Indices: 105581--105637 Score: 60
Period size: 14 Copynumber: 4.1 Consensus size: 13
105571 ATATGAATTA
*
105581 TTTACACATCAAT
1 TTTACAAATCAAT
105594 TTTAAACAAATCAACT
1 TTT--ACAAATCAA-T
105610 TTTACAAATCAATT
1 TTTACAAATCAA-T
*
105624 TTTATAAATCAAT
1 TTTACAAATCAAT
105637 T
1 T
105638 AAACAAGCAA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
13 5 0.13
14 21 0.55
15 8 0.21
16 4 0.11
ACGTcount: A:0.44, C:0.16, G:0.00, T:0.40
Consensus pattern (13 bp):
TTTACAAATCAAT
Found at i:107654 original size:18 final size:18
Alignment explanation
Indices: 107631--107697 Score: 80
Period size: 20 Copynumber: 3.5 Consensus size: 18
107621 GAAACTTAAA
*
107631 ATCGCAACACGAATGACT
1 ATCGCAACGCGAATGACT
107649 ATCGCAACGCGAAAATGACT
1 ATCGCAACGCG--AATGACT
107669 ATCGCAACGCGAATTTGACT
1 ATCGCAACGCGAA--TGACT
*
107689 ATCACAACG
1 ATCGCAACG
107698 AGAGAATCGC
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
18 12 0.28
20 31 0.72
ACGTcount: A:0.37, C:0.27, G:0.18, T:0.18
Consensus pattern (18 bp):
ATCGCAACGCGAATGACT
Found at i:107667 original size:20 final size:20
Alignment explanation
Indices: 107642--107697 Score: 85
Period size: 20 Copynumber: 2.8 Consensus size: 20
107632 TCGCAACACG
107642 AATGACTATCGCAACGCGAA
1 AATGACTATCGCAACGCGAA
107662 AATGACTATCGCAACGCGAA
1 AATGACTATCGCAACGCGAA
** *
107682 TTTGACTATCACAACG
1 AATGACTATCGCAACG
107698 AGAGAATCGC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.38, C:0.25, G:0.18, T:0.20
Consensus pattern (20 bp):
AATGACTATCGCAACGCGAA
Found at i:107931 original size:18 final size:18
Alignment explanation
Indices: 107908--107953 Score: 83
Period size: 18 Copynumber: 2.6 Consensus size: 18
107898 CTAAGCAATC
107908 TAAGTGAAATGGTTAATA
1 TAAGTGAAATGGTTAATA
*
107926 TAAGTGAAATGGTTAATC
1 TAAGTGAAATGGTTAATA
107944 TAAGTGAAAT
1 TAAGTGAAAT
107954 TACGAGTAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.43, C:0.02, G:0.22, T:0.33
Consensus pattern (18 bp):
TAAGTGAAATGGTTAATA
Found at i:109706 original size:20 final size:20
Alignment explanation
Indices: 109683--109789 Score: 119
Period size: 20 Copynumber: 5.5 Consensus size: 20
109673 TCTGAAACTT
*
109683 AAAATCGCAACACGAAAATG
1 AAAATCGCAACGCGAAAATG
*
109703 AAAATCGCAACACGAAAATG
1 AAAATCGCAACGCGAAAATG
** **
109723 ACTATCGCAACGCGAATTTG
1 AAAATCGCAACGCGAAAATG
**
109743 ACTATCGCAACGCG-AAATG
1 AAAATCGCAACGCGAAAATG
*
109762 AAAATCGCAACGCGAAACT-
1 AAAATCGCAACGCGAAAATG
109781 AAAATCGCA
1 AAAATCGCA
109790 TTGCGATTCT
Statistics
Matches: 76, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
19 24 0.32
20 52 0.68
ACGTcount: A:0.46, C:0.23, G:0.17, T:0.14
Consensus pattern (20 bp):
AAAATCGCAACGCGAAAATG
Found at i:110418 original size:20 final size:20
Alignment explanation
Indices: 110393--110510 Score: 148
Period size: 20 Copynumber: 5.9 Consensus size: 20
110383 GCGCTTTGAA
110393 AATCGCATTGCGATAGTCAT
1 AATCGCATTGCGATAGTCAT
* *
110413 AATCGCGTTGCGATAGTCAG
1 AATCGCATTGCGATAGTCAT
* *
110433 CATCGCGTTGCGATAGTCAT
1 AATCGCATTGCGATAGTCAT
* *
110453 AATCGCGTTGCGATTGTCAT
1 AATCGCATTGCGATAGTCAT
*
110473 AATCGCATTGCGAT-TTACAT
1 AATCGCATTGCGATAGT-CAT
*
110493 ATTCGCATTGCGATAGTC
1 AATCGCATTGCGATAGTC
110511 GGAAAATCGC
Statistics
Matches: 86, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
19 1 0.01
20 84 0.98
21 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.31
Consensus pattern (20 bp):
AATCGCATTGCGATAGTCAT
Found at i:111098 original size:46 final size:46
Alignment explanation
Indices: 111034--111123 Score: 137
Period size: 46 Copynumber: 2.0 Consensus size: 46
111024 TATTTTATCT
*
111034 GAACTTTAATGATCAAATTAAAAATTAATCACTATTATTAATATAA
1 GAACTTTAATGATAAAATTAAAAATTAATCACTATTATTAATATAA
* *
111080 GAACTTTAA-GAATAAAATTAAAAATTAATCATTATTATTTATAT
1 GAACTTTAATG-ATAAAATTAAAAATTAATCACTATTATTAATAT
111124 CTCATATCAT
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
45 1 0.03
46 39 0.98
ACGTcount: A:0.50, C:0.07, G:0.04, T:0.39
Consensus pattern (46 bp):
GAACTTTAATGATAAAATTAAAAATTAATCACTATTATTAATATAA
Found at i:119410 original size:60 final size:59
Alignment explanation
Indices: 119343--119454 Score: 145
Period size: 60 Copynumber: 1.9 Consensus size: 59
119333 TGTAGGATAT
*
119343 TATTTTATCGAGTCACTTAACTACTAAAAGTTATAAAATAGTCATCC-GACTATAGAGAGC
1 TATTTTATCGAGTCACTCAACTACTAAAAGTTAT-AAATAGTCA-CCTGACTATAGAGAGC
** * * *
119403 TATTTTATTTATTCTCTCAACTATTAAAAGTTATAAATAGTCACCTGACTAT
1 TATTTTATCGAGTCACTCAACTACTAAAAGTTATAAATAGTCACCTGACTAT
119455 TTATATGTTC
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
58 2 0.04
59 15 0.33
60 28 0.62
ACGTcount: A:0.37, C:0.16, G:0.10, T:0.38
Consensus pattern (59 bp):
TATTTTATCGAGTCACTCAACTACTAAAAGTTATAAATAGTCACCTGACTATAGAGAGC
Found at i:120350 original size:21 final size:21
Alignment explanation
Indices: 120320--120367 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
120310 AGTATATAAC
*
120320 AATAACAAAATCGGTAGAAAA
1 AATAATAAAATCGGTAGAAAA
* *
120341 AATAATAAAATCGGTATAAAT
1 AATAATAAAATCGGTAGAAAA
120362 AATAAT
1 AATAAT
120368 GTTTCCTGTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.60, C:0.06, G:0.10, T:0.23
Consensus pattern (21 bp):
AATAATAAAATCGGTAGAAAA
Found at i:126941 original size:197 final size:197
Alignment explanation
Indices: 126606--127001 Score: 648
Period size: 197 Copynumber: 2.0 Consensus size: 197
126596 CGAAGCACTC
126606 GGGAAATATAAACGCTTCGCTTGTCAAAGAGTTCTACACAAACATATTTGACCTGCTACAACACT
1 GGGAAATATAAACGCTTCGCTTGTCAAAGAGTTCTACACAAACATATTTGACCTGCTACAACACT
* *
126671 CCGTCTTTGTGAGGAGTATATTCATTCACTTACACCTTCTGCAATTAACTGATATTTTAAGCTGT
66 CCGTCTTTGTGAGGAGTAAATTCATTCACTTACACCTTCTGCAATTAACTGATATTTTAAGCTGC
* * *
126736 AGGATATTGTTGATCGTCATACAAACTTTGTGAAGAAGGCCGACAATGAGTCATATTAATGTGTG
131 AGGATATTGTCGATCGCCATACAAACTTTGTGAAGAAGGCCGACAATGAGTCATATCAATGTGTG
126801 TT
196 TT
* * *
126803 GGGAAATGTAAATGCTTCGCTTGTCAAAGAGTTCTACGCAAACATATTTGACCTGCTACAACACT
1 GGGAAATATAAACGCTTCGCTTGTCAAAGAGTTCTACACAAACATATTTGACCTGCTACAACACT
* * * *
126868 CTGTCTTTGTGAGGGGTAAATTCATTCGCTTACACCTTTTGCAATTAACTGATATTTTAAGCTGC
66 CCGTCTTTGTGAGGAGTAAATTCATTCACTTACACCTTCTGCAATTAACTGATATTTTAAGCTGC
* * * *
126933 ATGATATTGTCGATCGCCATACAAACTTTGTGAATAATGTCGACAATGAGTCATATCAATGTGTG
131 AGGATATTGTCGATCGCCATACAAACTTTGTGAAGAAGGCCGACAATGAGTCATATCAATGTGTG
126998 TT
196 TT
127000 GG
1 GG
127002 AGGGTCTATG
Statistics
Matches: 183, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
197 183 1.00
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33
Consensus pattern (197 bp):
GGGAAATATAAACGCTTCGCTTGTCAAAGAGTTCTACACAAACATATTTGACCTGCTACAACACT
CCGTCTTTGTGAGGAGTAAATTCATTCACTTACACCTTCTGCAATTAACTGATATTTTAAGCTGC
AGGATATTGTCGATCGCCATACAAACTTTGTGAAGAAGGCCGACAATGAGTCATATCAATGTGTG
TT
Found at i:128351 original size:18 final size:18
Alignment explanation
Indices: 128282--128351 Score: 52
Period size: 20 Copynumber: 3.7 Consensus size: 18
128272 ATACCTCTTG
128282 ATATATTATTTTTCCAATTAA
1 ATATATTATTTTT--AA-TAA
* *
128303 AT-TCTTATTTTTATTTAAA
1 ATATATTATTTTTA-AT-AA
* *
128322 AAATAATATTTTTAATAA
1 ATATATTATTTTTAATAA
128340 ATATATTATTTT
1 ATATATTATTTT
128352 ATGTAGGGTC
Statistics
Matches: 38, Mismatches: 8, Indels: 9
0.69 0.15 0.16
Matches are distributed among these distances:
18 14 0.37
19 4 0.11
20 18 0.47
21 2 0.05
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (18 bp):
ATATATTATTTTTAATAA
Found at i:141617 original size:21 final size:21
Alignment explanation
Indices: 141591--141642 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
141581 CACCTTAAAA
**
141591 TTTTAAAATTATTATAATTTT
1 TTTTAAAAAAATTATAATTTT
*
141612 TTTTAAAAAAATTATATTTTT
1 TTTTAAAAAAATTATAATTTT
141633 TTATTAAAAA
1 TT-TTAAAAA
141643 TATATTTTCT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
21 20 0.74
22 7 0.26
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (21 bp):
TTTTAAAAAAATTATAATTTT
Found at i:141631 original size:19 final size:19
Alignment explanation
Indices: 141609--141650 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
141599 TTATTATAAT
141609 TTTTTTTA-AAAAAATTATA
1 TTTTTTTATAAAAAA-TATA
*
141628 TTTTTTTATTAAAAATATA
1 TTTTTTTATAAAAAATATA
141647 TTTT
1 TTTT
141651 CTATCATATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 16 0.76
20 5 0.24
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (19 bp):
TTTTTTTATAAAAAATATA
Found at i:148811 original size:257 final size:258
Alignment explanation
Indices: 148320--148839 Score: 981
Period size: 261 Copynumber: 2.0 Consensus size: 258
148310 AATGAACCGA
148320 GCTTGAACGAATAAGGTTATGTTTGTGTTCGTTTATTTATTTTTGAAGGTGTTCATATTCTATTC
1 GCTTGAACGAATAAGGTTATGTTTGTGTTCGTTTATTTATTTTTGAAGGTGTTCATATTCTATTC
148385 GTGTTCATTTAAATTTTTAGCATCGTGTTCGTGTTCGTTTATTTATTTTTGAAGGTGTTCATTTA
66 GTGTTCATTTAAATTTTTAGCATCGTGTTCGTGTTCGTTTATTTATTTTTGAAGGTGTTCATTTA
148450 TTTATTGTTCACAATCACGAACATGTTCGCTTAATGTTCACGAACGTGTTCATTTAGCGTTCACA
131 TTTATTGTTCACAATCACGAACATGTTCGCTTAATGTT-AC-AACGTGTTCATTTAGCGTTCACA
148515 AATATGTTCGTTTTTTAGTTTTACCCTTTTAAGCTAAAGAAAAAATGGTAAAATTACACCATTAG
194 AATATGTTCGTTTTTTAGTTTTACCCTTTTAAGCTAAAG-AAAAATGGTAAAATTACACCATTAG
148580 T
258 T
148581 GCTTGAACGAATAAGGTTATGTTTGTGTTCGTTTATTTATTTTTGAAGGTGTTCATATTCTATTC
1 GCTTGAACGAATAAGGTTATGTTTGTGTTCGTTTATTTATTTTTGAAGGTGTTCATATTCTATTC
148646 GTGTTCATTTAAATTTTTAGCATCGTGTTCGTGTTCGTTTATTTATTTTTGAAGGTGTTCATTTA
66 GTGTTCATTTAAATTTTTAGCATCGTGTTCGTGTTCGTTTATTTATTTTTGAAGGTGTTCATTTA
*
148711 TTTATTGTTCACAATCACGAATATGTTCGCTTAATGTT-C-ACGTGTTCATTTAGCGTTCACAAA
131 TTTATTGTTCACAATCACGAACATGTTCGCTTAATGTTACAACGTGTTCATTTAGCGTTCACAAA
*
148774 TATGTTCGTTTTTTAGTTTTACCCTTTTAAGCTAAAGAAAAATGGTAAAATTACGCCATTAGT
196 TATGTTCGTTTTTTAGTTTTACCCTTTTAAGCTAAAGAAAAATGGTAAAATTACACCATTAGT
148837 GCT
1 GCT
148840 AGGACTCTTT
Statistics
Matches: 257, Mismatches: 2, Indels: 5
0.97 0.01 0.02
Matches are distributed among these distances:
256 28 0.11
257 61 0.24
259 1 0.00
261 167 0.65
ACGTcount: A:0.25, C:0.13, G:0.17, T:0.45
Consensus pattern (258 bp):
GCTTGAACGAATAAGGTTATGTTTGTGTTCGTTTATTTATTTTTGAAGGTGTTCATATTCTATTC
GTGTTCATTTAAATTTTTAGCATCGTGTTCGTGTTCGTTTATTTATTTTTGAAGGTGTTCATTTA
TTTATTGTTCACAATCACGAACATGTTCGCTTAATGTTACAACGTGTTCATTTAGCGTTCACAAA
TATGTTCGTTTTTTAGTTTTACCCTTTTAAGCTAAAGAAAAATGGTAAAATTACACCATTAGT
Found at i:151315 original size:2 final size:2
Alignment explanation
Indices: 151310--151347 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
151300 ATTTTGTTAC
151310 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
151348 TATTAGTATT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:151647 original size:5 final size:4
Alignment explanation
Indices: 151586--151645 Score: 52
Period size: 4 Copynumber: 14.5 Consensus size: 4
151576 TCTATTCATA
* *
151586 TTAT TTAT TTAT TTAT TTA- TT-T TTGT TTAG TTATT TTAT TTACT CTTATT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTA-T TTAT TTA-T -TTA-T
151636 TTAT TTAT TT
1 TTAT TTAT TT
151646 TAATATTTTG
Statistics
Matches: 47, Mismatches: 4, Indels: 10
0.77 0.07 0.16
Matches are distributed among these distances:
3 4 0.09
4 32 0.68
5 7 0.15
6 4 0.09
ACGTcount: A:0.20, C:0.03, G:0.03, T:0.73
Consensus pattern (4 bp):
TTAT
Found at i:151654 original size:17 final size:17
Alignment explanation
Indices: 151632--151679 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
151622 TATTTACTCT
151632 TATTTTATTTATTTTAA
1 TATTTTATTTATTTTAA
*
151649 TATTTTGA-TTATTTTAG
1 TATTTT-ATTTATTTTAA
*
151666 TTTATTTATTTATT
1 TAT-TTTATTTATT
151680 CATTATATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
17 17 0.65
18 9 0.35
ACGTcount: A:0.25, C:0.00, G:0.04, T:0.71
Consensus pattern (17 bp):
TATTTTATTTATTTTAA
Found at i:152983 original size:20 final size:22
Alignment explanation
Indices: 152939--152986 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 22
152929 ATACTTTTAC
152939 AATATTATATATGTAATATAAAA
1 AATATTATATATGT-ATATAAAA
*
152962 AATATTATATATTTATATAAAA
1 AATATTATATATGTATATAAAA
152984 AAT
1 AAT
152987 TAACATATCA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 11 0.46
23 13 0.54
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (22 bp):
AATATTATATATGTATATAAAA
Found at i:152988 original size:20 final size:23
Alignment explanation
Indices: 152939--152986 Score: 80
Period size: 22 Copynumber: 2.1 Consensus size: 23
152929 ATACTTTTAC
152939 AATATTATATATGTAATATAAAA
1 AATATTATATATGTAATATAAAA
*
152962 AATATTATATAT-TTATATAAAA
1 AATATTATATATGTAATATAAAA
152984 AAT
1 AAT
152987 TAACATATCA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 12 0.50
23 12 0.50
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (23 bp):
AATATTATATATGTAATATAAAA
Found at i:152994 original size:23 final size:23
Alignment explanation
Indices: 152945--152994 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
152935 TTACAATATT
**
152945 ATATATGTAATATAAAAAATATT
1 ATATATGTAATATAAAAAATAAC
*
152968 ATATAT-TTATATAAAAAATTAAC
1 ATATATGTAATATAAAAAA-TAAC
152991 ATAT
1 ATAT
152995 CAACAATTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 11 0.48
23 12 0.52
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (23 bp):
ATATATGTAATATAAAAAATAAC
Found at i:153906 original size:29 final size:29
Alignment explanation
Indices: 153851--153913 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
153841 AAACTTATTT
*
153851 TTTATTCTCTGAAATTTTATAAATTTAAG
1 TTTATTCTCTGAAATTTTATAAATTTAAA
*
153880 TTTATTCTCT-AATATTTTA-ATATTTTAAA
1 TTTATTCTCTGAA-ATTTTATA-AATTTAAA
153909 TTTAT
1 TTTAT
153914 CCATTAACAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
28 3 0.10
29 27 0.90
ACGTcount: A:0.33, C:0.06, G:0.03, T:0.57
Consensus pattern (29 bp):
TTTATTCTCTGAAATTTTATAAATTTAAA
Found at i:155836 original size:14 final size:13
Alignment explanation
Indices: 155809--155835 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
155799 TATATGAAAC
155809 TAAATTACTTTTT
1 TAAATTACTTTTT
155822 TAAATTACTTTTT
1 TAAATTACTTTTT
155835 T
1 T
155836 TCAAAAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (13 bp):
TAAATTACTTTTT
Found at i:156610 original size:87 final size:87
Alignment explanation
Indices: 156464--156626 Score: 281
Period size: 87 Copynumber: 1.9 Consensus size: 87
156454 TATGTTATAT
*
156464 TATTTAACCAGAAATATTATCACGTACAATAACATATTAGGTAACGCTTATATAATGTAATAGAT
1 TATTTAACCAGAAATATTATCAAGTACAATAACATATTAGGTAACGCTTATATAATGTAATAGAT
156529 AGCGCTTATATAATAAAATAAG
66 AGCGCTTATATAATAAAATAAG
** * *
156551 TATTTAACGGGAAATATTATCAAGTACAATAACATATTAGGTAGCGCTTATATAATGTAATAGGT
1 TATTTAACCAGAAATATTATCAAGTACAATAACATATTAGGTAACGCTTATATAATGTAATAGAT
156616 AGCGCTTATAT
66 AGCGCTTATAT
156627 TGACCTATTT
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
87 71 1.00
ACGTcount: A:0.42, C:0.11, G:0.14, T:0.33
Consensus pattern (87 bp):
TATTTAACCAGAAATATTATCAAGTACAATAACATATTAGGTAACGCTTATATAATGTAATAGAT
AGCGCTTATATAATAAAATAAG
Found at i:157090 original size:260 final size:246
Alignment explanation
Indices: 156739--157256 Score: 831
Period size: 260 Copynumber: 2.0 Consensus size: 246
156729 CTTTTTATAA
156739 AAGTATCGACACTTTATGCTTGCACCTCGTTAGGCATTAATATTTCATTCTGGACAAAAATATCG
1 AAGTATCGACACTTTATGCTTGCACCTCGTTAGGCATTAATATTTCATTCTGGACAAAAATATCG
*
156804 ACACAAACTAAAAAAGTGTCGATACATGATTTAGACATATTCTCTCATAAAACTGGTATAATTAT
66 ACACAAACTAAAAAAGTGTCGATACATGATTTAGACATATTCTCTCATAAAACCGGTATAATTAT
*
156869 ACCGGTTTTATTGACCATTTACCTATTACATTATACTTATGGGTTTCGATGTTTTAGGGATCGAT
131 ACCGG---T-TT---CA-TT---GA--ACATTATACTTATGGGTTTCGATGTTTTAGGGATCGAT
*
156934 ATTTTTTTAATAAATGTATCGACACTTTTTAAGGGTACACCTTTTTTGGCATTCATTCTAGACCG
183 ACTTTTTTAATAAATGTATCGACAC--TTTAAGGGTACACCTTTTTTGGCATTCATTCTAGACCG
156999 T
246 T
**
157000 AAGTATCGACACTTTATGCTTGCACCTCGTT-GGTTTTAATATTTCATTCTGGACAAAAATATCG
1 AAGTATCGACACTTTATGCTTGCACCTCGTTAGGCATTAATATTTCATTCTGGACAAAAATATCG
*
157064 ACACAAACTAAAAAAGTGTCGATACATGATTTAGACCTATTCTCTCATAAAACCGGTATAATTAT
66 ACACAAACTAAAAAAGTGTCGATACATGATTTAGACATATTCTCTCATAAAACCGGTATAATTAT
157129 ACCGGTTTCATTGAACATTATACTTATGGGTTTCGATGTTTTAGGGATCGATACTTTTTTAATAA
131 ACCGGTTTCATTGAACATTATACTTATGGGTTTCGATGTTTTAGGGATCGATACTTTTTTAATAA
*
157194 ATGTATCGACACTTTAAGGGTACACCTTTTTTGGCATTCATTCTAGATCGT
196 ATGTATCGACACTTTAAGGGTACACCTTTTTTGGCATTCATTCTAGACCGT
157245 AAGTATCGACAC
1 AAGTATCGACAC
157257 AACTTTAACA
Statistics
Matches: 250, Mismatches: 7, Indels: 16
0.92 0.03 0.06
Matches are distributed among these distances:
245 50 0.20
247 62 0.25
249 1 0.00
252 2 0.01
253 2 0.01
256 2 0.01
257 1 0.00
260 99 0.40
261 31 0.12
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.37
Consensus pattern (246 bp):
AAGTATCGACACTTTATGCTTGCACCTCGTTAGGCATTAATATTTCATTCTGGACAAAAATATCG
ACACAAACTAAAAAAGTGTCGATACATGATTTAGACATATTCTCTCATAAAACCGGTATAATTAT
ACCGGTTTCATTGAACATTATACTTATGGGTTTCGATGTTTTAGGGATCGATACTTTTTTAATAA
ATGTATCGACACTTTAAGGGTACACCTTTTTTGGCATTCATTCTAGACCGT
Found at i:160301 original size:120 final size:120
Alignment explanation
Indices: 160085--160323 Score: 361
Period size: 120 Copynumber: 2.0 Consensus size: 120
160075 TCTTCCATTT
*
160085 TGGACATAAAGTACCGACACAATATTAAAAAGTGTCGACATAGGTTGTAGACCTATTCGCTAATA
1 TGGACATAAAGTACCGACACAAAATTAAAAAGTGTCGACATAGGTTGTAGACCTATTCGCTAATA
* * *
160150 AAACTGGTATACTTATACCGGTTATATTACAAAATTATCTAGTACATTATAATTC
66 AAACCGGTATACTTATAACGGTTATACTACAAAATTATCTAGTACATTATAATTC
* * * * * *
160205 TGGACATAAAGTACCTACACAAAATTAAAAAGTTTTGATATAGGTTGTAGACCTATTCGTTCATA
1 TGGACATAAAGTACCGACACAAAATTAAAAAGTGTCGACATAGGTTGTAGACCTATTCGCTAATA
* * *
160270 AAACCGGTATATTTATAACGGTTATACTACAAAATTATCTATTATATTATAATT
66 AAACCGGTATACTTATAACGGTTATACTACAAAATTATCTAGTACATTATAATT
160324 TTGGGTTTCG
Statistics
Matches: 106, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
120 106 1.00
ACGTcount: A:0.39, C:0.14, G:0.13, T:0.34
Consensus pattern (120 bp):
TGGACATAAAGTACCGACACAAAATTAAAAAGTGTCGACATAGGTTGTAGACCTATTCGCTAATA
AAACCGGTATACTTATAACGGTTATACTACAAAATTATCTAGTACATTATAATTC
Found at i:160472 original size:303 final size:303
Alignment explanation
Indices: 159918--160510 Score: 1042
Period size: 303 Copynumber: 2.0 Consensus size: 303
159908 AAAATTAGCG
* *
159918 ACACAATATTAAAAAGTGTCGATATAGATTGTAGACCTATTCGCTCATAAAACTGGTATATTTAT
1 ACACAAAATTAAAAAGTGTCGATATAGATTGTAGACCTATTCGCTCATAAAACCGGTATATTTAT
* *
159983 ACCGGTTATATTACAAAATTATCTATTACATTATAATTTTGGGTTCCGATGTGTAAATGTCGACA
66 AACGGTTATACTACAAAATTATCTATTACATTATAATTTTGGGTTCCGATGTGTAAATGTCGACA
*
160048 CTTTTTGACAAGGTATCGACACATTTTTCTTCCATTTTGGACATAAAGTACCGACACAATATTAA
131 CTTTTTGACAAGGTATCGACACATTTTTCTTCCATTCTGGACATAAAGTACCGACACAATATTAA
*
160113 AAAGTGTCGACATAGGTTGTAGACCTATTCGCTAATAAAACTGGTATACTTATACCGGTTATATT
196 AAAGTGTCGACATAGGTTGTAGACCTATTCGCTAATAAAACCGGTATACTTATACCGGTTATATT
160178 ACAAAATTATCTAGTACATTATAATTCTGGACATAAAGTACCT
261 ACAAAATTATCTAGTACATTATAATTCTGGACATAAAGTACCT
* * * *
160221 ACACAAAATTAAAAAGTTTTGATATAGGTTGTAGACCTATTCGTTCATAAAACCGGTATATTTAT
1 ACACAAAATTAAAAAGTGTCGATATAGATTGTAGACCTATTCGCTCATAAAACCGGTATATTTAT
* *
160286 AACGGTTATACTACAAAATTATCTATTATATTATAATTTTGGGTTTCGATGTGTAAATGTCGACA
66 AACGGTTATACTACAAAATTATCTATTACATTATAATTTTGGGTTCCGATGTGTAAATGTCGACA
160351 CTTTTTGACAAGGTATCGACACATTTTTCTTCCATTCTGGACATAAAGTACCGACACAATATTAA
131 CTTTTTGACAAGGTATCGACACATTTTTCTTCCATTCTGGACATAAAGTACCGACACAATATTAA
* * *
160416 AAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATTTATACCGGTTATATT
196 AAAGTGTCGACATAGGTTGTAGACCTATTCGCTAATAAAACCGGTATACTTATACCGGTTATATT
*
160481 ACAAAATTATCTATTACATTATAATTCTGG
261 ACAAAATTATCTAGTACATTATAATTCTGG
160511 GTTCCGATGT
Statistics
Matches: 274, Mismatches: 16, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
303 274 1.00
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.36
Consensus pattern (303 bp):
ACACAAAATTAAAAAGTGTCGATATAGATTGTAGACCTATTCGCTCATAAAACCGGTATATTTAT
AACGGTTATACTACAAAATTATCTATTACATTATAATTTTGGGTTCCGATGTGTAAATGTCGACA
CTTTTTGACAAGGTATCGACACATTTTTCTTCCATTCTGGACATAAAGTACCGACACAATATTAA
AAAGTGTCGACATAGGTTGTAGACCTATTCGCTAATAAAACCGGTATACTTATACCGGTTATATT
ACAAAATTATCTAGTACATTATAATTCTGGACATAAAGTACCT
Found at i:160521 original size:183 final size:183
Alignment explanation
Indices: 160201--160693 Score: 851
Period size: 183 Copynumber: 2.7 Consensus size: 183
160191 GTACATTATA
* * * * *
160201 ATTCTGGACATAAAGTACCTACACAAAATTAAAAAGTTTTGATATAGGTTGTAGACCTATTCGTT
1 ATTCTGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCT
* * * *
160266 CATAAAACCGGTATATTTATAACGGTTATACTACAAAATTATCTATTATATTATAATTTTGGGTT
66 CATAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTT
*
160331 TCGATGTGTAAATGTCGACACTTTTTGACAAGGTATCGACACATTTTTCTTCC
131 CCGATGTGTAAATGTCGACACTTTTTGACAAGGTATCGACACATTTTTCTTCC
160384 ATTCTGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCT
1 ATTCTGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCT
160449 CATAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTT
66 CATAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTT
*
160514 CCGATGTGTAAATGTCGACACTTTTTGACAAGGTATCGACACATTTTTCTTCT
131 CCGATGTGTAAATGTCGACACTTTTTGACAAGGTATCGACACATTTTTCTTCC
*
160567 ATTCTGGACATAAAGTACCGACACAATATTAAAAAGTGTCGACATAGGTTGTAGACCTATTCGCT
1 ATTCTGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCT
* * *
160632 AATAAAACCGGTATACTTATACCGGTTATATTACAAAATTATCTAGTACATTATAATTCTGG
66 CATAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGG
160694 ACATAAAGTA
Statistics
Matches: 295, Mismatches: 15, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
183 295 1.00
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.35
Consensus pattern (183 bp):
ATTCTGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCT
CATAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTT
CCGATGTGTAAATGTCGACACTTTTTGACAAGGTATCGACACATTTTTCTTCC
Found at i:160693 original size:303 final size:303
Alignment explanation
Indices: 160384--161597 Score: 2286
Period size: 303 Copynumber: 4.0 Consensus size: 303
160374 TTTTTCTTCC
*
160384 ATTCTGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCT
1 ATTCTGGACATAAAGTACCGACACAAAATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCT
160449 CATAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTT
66 CATAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTT
*
160514 CCGATGTGTAAATGTCGACACTTTTTGACAAGGTATCGACACATTTTTCTTCTATTCTGGACATA
131 CCGATGTGTAAATGTCGACACTTTTTGACAAGGTATCGACACATTTTTCTTCCATTCTGGACATA
160579 AAGTACCGACACAATATTAAAAAGTGTCGACATAGGTTGTAGACCTATTCGCTAATAAAACCGGT
196 AAGTACCGACACAATATTAAAAAGTGTCGACATAGGTTGTAGACCTATTCGCTAATAAAACCGGT
160644 ATACTTATACCGGTTATATTACAAAATTATCTAGTACATTATA
261 ATACTTATACCGGTTATATTACAAAATTATCTAGTACATTATA
*
160687 ATTCTGGACATAAAGTACCGACACAAAATTAAAAAGTGTCGATATAGGTTGTAAACCTATTCGCT
1 ATTCTGGACATAAAGTACCGACACAAAATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCT
*
160752 CATAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTTTGGGTT
66 CATAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTT
160817 CCGATGTGTAAATGTCGACACTTTTTGACAAGGTATCGACACATTTTTCTTCCATTCTGGACATA
131 CCGATGTGTAAATGTCGACACTTTTTGACAAGGTATCGACACATTTTTCTTCCATTCTGGACATA
**
160882 AAGTACCGACACAATATTAAAAAGTGTCGACATAGGTTGTAGACCTATTCGCTAATAAAATTGGT
196 AAGTACCGACACAATATTAAAAAGTGTCGACATAGGTTGTAGACCTATTCGCTAATAAAACCGGT
160947 ATACTTATACCGGTTATATTACAAAATTATCTAGTACATTATA
261 ATACTTATACCGGTTATATTACAAAATTATCTAGTACATTATA
160990 ATTCTGGACATAAAGTACCGACACAAAATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCT
1 ATTCTGGACATAAAGTACCGACACAAAATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCT
161055 CATAAAACC-GTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTT
66 CATAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTT
161119 CCGATGTGTAAATGTCGACACTTTTTGACAAGGTATCGACACATTTTTCTTCCATTCTGGACATA
131 CCGATGTGTAAATGTCGACACTTTTTGACAAGGTATCGACACATTTTTCTTCCATTCTGGACATA
161184 AAGTACCGACACAATATTAAAAAGTGTCGACATAGGTTGTAGACCTATTCGCTAATAAAACCGGT
196 AAGTACCGACACAATATTAAAAAGTGTCGACATAGGTTGTAGACCTATTCGCTAATAAAACCGGT
*
161249 ATACTTATACCGATTATATTACAAAATTATCTAGTACATTATA
261 ATACTTATACCGGTTATATTACAAAATTATCTAGTACATTATA
*
161292 ATTCTGGACATAAAGTACCGATACAAAATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCT
1 ATTCTGGACATAAAGTACCGACACAAAATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCT
161357 CATAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTT
66 CATAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTT
161422 CCGATGTGTAAATGTCGACACTTTTTGACAAGGTATCGACACATTTTTCTTCCATTCTGGACATA
131 CCGATGTGTAAATGTCGACACTTTTTGACAAGGTATCGACACATTTTTCTTCCATTCTGGACATA
* * * * *
161487 AAGTACCGACATAATATTAAAAAATGTCGATATAGGTTGTAGACCTATTTGCTCATAAAACCGGT
196 AAGTACCGACACAATATTAAAAAGTGTCGACATAGGTTGTAGACCTATTCGCTAATAAAACCGGT
* *
161552 ATATTTATACCGGTTATATTACAAAATTATCTATTACATTATA
261 ATACTTATACCGGTTATATTACAAAATTATCTAGTACATTATA
161595 ATT
1 ATT
161598 ATGGGTTCTG
Statistics
Matches: 890, Mismatches: 20, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
302 297 0.33
303 593 0.67
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.34
Consensus pattern (303 bp):
ATTCTGGACATAAAGTACCGACACAAAATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCT
CATAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTT
CCGATGTGTAAATGTCGACACTTTTTGACAAGGTATCGACACATTTTTCTTCCATTCTGGACATA
AAGTACCGACACAATATTAAAAAGTGTCGACATAGGTTGTAGACCTATTCGCTAATAAAACCGGT
ATACTTATACCGGTTATATTACAAAATTATCTAGTACATTATA
Found at i:160780 original size:120 final size:120
Alignment explanation
Indices: 160567--160809 Score: 432
Period size: 120 Copynumber: 2.0 Consensus size: 120
160557 TTTTTCTTCT
* *
160567 ATTCTGGACATAAAGTACCGACACAATATTAAAAAGTGTCGACATAGGTTGTAGACCTATTCGCT
1 ATTCTGGACATAAAGTACCGACACAAAATTAAAAAGTGTCGACATAGGTTGTAAACCTATTCGCT
160632 AATAAAACCGGTATACTTATACCGGTTATATTACAAAATTATCTAGTACATTATA
66 AATAAAACCGGTATACTTATACCGGTTATATTACAAAATTATCTAGTACATTATA
*
160687 ATTCTGGACATAAAGTACCGACACAAAATTAAAAAGTGTCGATATAGGTTGTAAACCTATTCGCT
1 ATTCTGGACATAAAGTACCGACACAAAATTAAAAAGTGTCGACATAGGTTGTAAACCTATTCGCT
* * *
160752 CATAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATA
66 AATAAAACCGGTATACTTATACCGGTTATATTACAAAATTATCTAGTACATTATA
160807 ATT
1 ATT
160810 TTGGGTTCCG
Statistics
Matches: 117, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
120 117 1.00
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (120 bp):
ATTCTGGACATAAAGTACCGACACAAAATTAAAAAGTGTCGACATAGGTTGTAAACCTATTCGCT
AATAAAACCGGTATACTTATACCGGTTATATTACAAAATTATCTAGTACATTATA
Found at i:160827 original size:486 final size:486
Alignment explanation
Indices: 159916--160996 Score: 1982
Period size: 486 Copynumber: 2.2 Consensus size: 486
159906 TTAAAATTAG
*
159916 CGACACAATATTAAAAAGTGTCGATATAGATTGTAGACCTATTCGCTCATAAAACTGGTATATTT
1 CGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACTGGTATATTT
*
159981 ATACCGGTTATATTACAAAATTATCTATTACATTATAATTTTGGGTTCCGATGTGTAAATGTCGA
66 ATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATGTGTAAATGTCGA
*
160046 CACTTTTTGACAAGGTATCGACACATTTTTCTTCCATTTTGGACATAAAGTACCGACACAATATT
131 CACTTTTTGACAAGGTATCGACACATTTTTCTTCCATTCTGGACATAAAGTACCGACACAATATT
*
160111 AAAAAGTGTCGACATAGGTTGTAGACCTATTCGCTAATAAAACTGGTATACTTATACCGGTTATA
196 AAAAAGTGTCGACATAGGTTGTAGACCTATTCGCTAATAAAACCGGTATACTTATACCGGTTATA
* * *
160176 TTACAAAATTATCTAGTACATTATAATTCTGGACATAAAGTACCTACACAAAATTAAAAAGTTTT
261 TTACAAAATTATCTAGTACATTATAATTCTGGACATAAAGTACCGACACAAAATTAAAAAGTGTC
* *
160241 GATATAGGTTGTAGACCTATTCGTTCATAAAACCGGTATATTTATAACGGTTATACTACAAAATT
326 GATATAGGTTGTAAACCTATTCGCTCATAAAACCGGTATATTTATAACGGTTATACTACAAAATT
* *
160306 ATCTATTATATTATAATTTTGGGTTTCGATGTGTAAATGTCGACACTTTTTGACAAGGTATCGAC
391 ATCTATTACATTATAATTTTGGGTTCCGATGTGTAAATGTCGACACTTTTTGACAAGGTATCGAC
160371 ACATTTTTCTTCCATTCTGGACATAAAGTAC
456 ACATTTTTCTTCCATTCTGGACATAAAGTAC
*
160402 CGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATTT
1 CGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACTGGTATATTT
160467 ATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATGTGTAAATGTCGA
66 ATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATGTGTAAATGTCGA
*
160532 CACTTTTTGACAAGGTATCGACACATTTTTCTTCTATTCTGGACATAAAGTACCGACACAATATT
131 CACTTTTTGACAAGGTATCGACACATTTTTCTTCCATTCTGGACATAAAGTACCGACACAATATT
160597 AAAAAGTGTCGACATAGGTTGTAGACCTATTCGCTAATAAAACCGGTATACTTATACCGGTTATA
196 AAAAAGTGTCGACATAGGTTGTAGACCTATTCGCTAATAAAACCGGTATACTTATACCGGTTATA
160662 TTACAAAATTATCTAGTACATTATAATTCTGGACATAAAGTACCGACACAAAATTAAAAAGTGTC
261 TTACAAAATTATCTAGTACATTATAATTCTGGACATAAAGTACCGACACAAAATTAAAAAGTGTC
* *
160727 GATATAGGTTGTAAACCTATTCGCTCATAAAACCGGTATATTTATACCGGTTATATTACAAAATT
326 GATATAGGTTGTAAACCTATTCGCTCATAAAACCGGTATATTTATAACGGTTATACTACAAAATT
160792 ATCTATTACATTATAATTTTGGGTTCCGATGTGTAAATGTCGACACTTTTTGACAAGGTATCGAC
391 ATCTATTACATTATAATTTTGGGTTCCGATGTGTAAATGTCGACACTTTTTGACAAGGTATCGAC
160857 ACATTTTTCTTCCATTCTGGACATAAAGTAC
456 ACATTTTTCTTCCATTCTGGACATAAAGTAC
* * * *
160888 CGACACAATATTAAAAAGTGTCGACATAGGTTGTAGACCTATTCGCTAATAAAATTGGTATACTT
1 CGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACTGGTATATTT
*
160953 ATACCGGTTATATTACAAAATTATCTAGTACATTATAATTCTGG
66 ATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGG
160997 ACATAAAGTA
Statistics
Matches: 574, Mismatches: 21, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
486 574 1.00
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.35
Consensus pattern (486 bp):
CGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACTGGTATATTT
ATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATGTGTAAATGTCGA
CACTTTTTGACAAGGTATCGACACATTTTTCTTCCATTCTGGACATAAAGTACCGACACAATATT
AAAAAGTGTCGACATAGGTTGTAGACCTATTCGCTAATAAAACCGGTATACTTATACCGGTTATA
TTACAAAATTATCTAGTACATTATAATTCTGGACATAAAGTACCGACACAAAATTAAAAAGTGTC
GATATAGGTTGTAAACCTATTCGCTCATAAAACCGGTATATTTATAACGGTTATACTACAAAATT
ATCTATTACATTATAATTTTGGGTTCCGATGTGTAAATGTCGACACTTTTTGACAAGGTATCGAC
ACATTTTTCTTCCATTCTGGACATAAAGTAC
Found at i:161244 original size:605 final size:606
Alignment explanation
Indices: 160384--161597 Score: 2286
Period size: 605 Copynumber: 2.0 Consensus size: 606
160374 TTTTTCTTCC
*
160384 ATTCTGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCT
1 ATTCTGGACATAAAGTACCGACACAAAATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCT
160449 CATAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTT
66 CATAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTT
*
160514 CCGATGTGTAAATGTCGACACTTTTTGACAAGGTATCGACACATTTTTCTTCTATTCTGGACATA
131 CCGATGTGTAAATGTCGACACTTTTTGACAAGGTATCGACACATTTTTCTTCCATTCTGGACATA
160579 AAGTACCGACACAATATTAAAAAGTGTCGACATAGGTTGTAGACCTATTCGCTAATAAAACCGGT
196 AAGTACCGACACAATATTAAAAAGTGTCGACATAGGTTGTAGACCTATTCGCTAATAAAACCGGT
*
160644 ATACTTATACCGGTTATATTACAAAATTATCTAGTACATTATAATTCTGGACATAAAGTACCGAC
261 ATACTTATACCGATTATATTACAAAATTATCTAGTACATTATAATTCTGGACATAAAGTACCGAC
160709 ACAAAATTAAAAAGTGTCGATATAGGTTGTAAACCTATTCGCTCATAAAACCGGTATATTTATAC
326 ACAAAATTAAAAAGTGTCGATATAGGTTGTAAACCTATTCGCTCATAAAACCGGTATATTTATAC
*
160774 CGGTTATATTACAAAATTATCTATTACATTATAATTTTGGGTTCCGATGTGTAAATGTCGACACT
391 CGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATGTGTAAATGTCGACACT
160839 TTTTGACAAGGTATCGACACATTTTTCTTCCATTCTGGACATAAAGTACCGACACAATATTAAAA
456 TTTTGACAAGGTATCGACACATTTTTCTTCCATTCTGGACATAAAGTACCGACACAATATTAAAA
* **
160904 AGTGTCGACATAGGTTGTAGACCTATTCGCTAATAAAATTGGTATACTTATACCGGTTATATTAC
521 AATGTCGACATAGGTTGTAGACCTATTCGCTAATAAAACCGGTATACTTATACCGGTTATATTAC
160969 AAAATTATCTAGTACATTATA
586 AAAATTATCTAGTACATTATA
160990 ATTCTGGACATAAAGTACCGACACAAAATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCT
1 ATTCTGGACATAAAGTACCGACACAAAATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCT
161055 CATAAAACC-GTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTT
66 CATAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTT
161119 CCGATGTGTAAATGTCGACACTTTTTGACAAGGTATCGACACATTTTTCTTCCATTCTGGACATA
131 CCGATGTGTAAATGTCGACACTTTTTGACAAGGTATCGACACATTTTTCTTCCATTCTGGACATA
161184 AAGTACCGACACAATATTAAAAAGTGTCGACATAGGTTGTAGACCTATTCGCTAATAAAACCGGT
196 AAGTACCGACACAATATTAAAAAGTGTCGACATAGGTTGTAGACCTATTCGCTAATAAAACCGGT
*
161249 ATACTTATACCGATTATATTACAAAATTATCTAGTACATTATAATTCTGGACATAAAGTACCGAT
261 ATACTTATACCGATTATATTACAAAATTATCTAGTACATTATAATTCTGGACATAAAGTACCGAC
*
161314 ACAAAATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATTTATAC
326 ACAAAATTAAAAAGTGTCGATATAGGTTGTAAACCTATTCGCTCATAAAACCGGTATATTTATAC
161379 CGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATGTGTAAATGTCGACACT
391 CGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATGTGTAAATGTCGACACT
*
161444 TTTTGACAAGGTATCGACACATTTTTCTTCCATTCTGGACATAAAGTACCGACATAATATTAAAA
456 TTTTGACAAGGTATCGACACATTTTTCTTCCATTCTGGACATAAAGTACCGACACAATATTAAAA
* * * *
161509 AATGTCGATATAGGTTGTAGACCTATTTGCTCATAAAACCGGTATATTTATACCGGTTATATTAC
521 AATGTCGACATAGGTTGTAGACCTATTCGCTAATAAAACCGGTATACTTATACCGGTTATATTAC
*
161574 AAAATTATCTATTACATTATA
586 AAAATTATCTAGTACATTATA
161595 ATT
1 ATT
161598 ATGGGTTCTG
Statistics
Matches: 593, Mismatches: 15, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
605 520 0.88
606 73 0.12
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.34
Consensus pattern (606 bp):
ATTCTGGACATAAAGTACCGACACAAAATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCT
CATAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTT
CCGATGTGTAAATGTCGACACTTTTTGACAAGGTATCGACACATTTTTCTTCCATTCTGGACATA
AAGTACCGACACAATATTAAAAAGTGTCGACATAGGTTGTAGACCTATTCGCTAATAAAACCGGT
ATACTTATACCGATTATATTACAAAATTATCTAGTACATTATAATTCTGGACATAAAGTACCGAC
ACAAAATTAAAAAGTGTCGATATAGGTTGTAAACCTATTCGCTCATAAAACCGGTATATTTATAC
CGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATGTGTAAATGTCGACACT
TTTTGACAAGGTATCGACACATTTTTCTTCCATTCTGGACATAAAGTACCGACACAATATTAAAA
AATGTCGACATAGGTTGTAGACCTATTCGCTAATAAAACCGGTATACTTATACCGGTTATATTAC
AAAATTATCTAGTACATTATA
Found at i:161386 original size:120 final size:120
Alignment explanation
Indices: 161172--161418 Score: 431
Period size: 120 Copynumber: 2.1 Consensus size: 120
161162 TTTTTCTTCC
*
161172 ATTCTGGACATAAAGTACCGACACAATATTAAAAAGTGTCGACATAGGTTGTAGACCTATTCGCT
1 ATTCTGGACATAAAGTACCGACACAAAATTAAAAAGTGTCGACATAGGTTGTAGACCTATTCGCT
161237 AATAAAACCGGTATACTTATACCGATTATATTACAAAATTATCTAGTACATTATA
66 AATAAAACCGGTATACTTATACCGATTATATTACAAAATTATCTAGTACATTATA
* *
161292 ATTCTGGACATAAAGTACCGATACAAAATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCT
1 ATTCTGGACATAAAGTACCGACACAAAATTAAAAAGTGTCGACATAGGTTGTAGACCTATTCGCT
* * * *
161357 CATAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATA
66 AATAAAACCGGTATACTTATACCGATTATATTACAAAATTATCTAGTACATTATA
161412 ATTCTGG
1 ATTCTGG
161419 GTTCCGATGT
Statistics
Matches: 120, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
120 120 1.00
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.32
Consensus pattern (120 bp):
ATTCTGGACATAAAGTACCGACACAAAATTAAAAAGTGTCGACATAGGTTGTAGACCTATTCGCT
AATAAAACCGGTATACTTATACCGATTATATTACAAAATTATCTAGTACATTATA
Found at i:161605 original size:183 final size:183
Alignment explanation
Indices: 161292--161880 Score: 1020
Period size: 183 Copynumber: 3.2 Consensus size: 183
161282 GTACATTATA
* *
161292 ATTCTGGACATAAAGTACCGATACAAAATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCT
1 ATTCTGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCT
*
161357 CATAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTT
66 CATAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTT
*
161422 CCGATGTGTAAATGTCGACACTTTTTGACAAGGTATCGACACATTTTTCTTCC
131 CCGATGTATAAATGTCGACACTTTTTGACAAGGTATCGACACATTTTTCTTCC
* * *
161475 ATTCTGGACATAAAGTACCGACATAATATTAAAAAATGTCGATATAGGTTGTAGACCTATTTGCT
1 ATTCTGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCT
161540 CATAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTT
66 CATAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTT
*
161605 CTGATGTATAAATGTCGACACTTTTTGACAAGGTATCGACACATTTTTCTTCC
131 CCGATGTATAAATGTCGACACTTTTTGACAAGGTATCGACACATTTTTCTTCC
*
161658 ATTCTGGACATAAAGTACCGACACAATATTAAAAAGTGTCGACATAGGTTGTAGACCTATTCGCT
1 ATTCTGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCT
*
161723 CATAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTAATACATTATAATTATGGGTT
66 CATAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTT
* * *
161788 CCGATGTTTTTTCAA--TCGACACTTTTTGAAAAGGTATCGACACATTTTTCTTCC
131 CCGATG---TATAAATGTCGACACTTTTTGACAAGGTATCGACACATTTTTCTTCC
161842 ATTCTGGACATAAAGTACCGACACAATATTAAAAAGTGT
1 ATTCTGGACATAAAGTACCGACACAATATTAAAAAGTGT
161881 GAAAACTTTG
Statistics
Matches: 386, Mismatches: 17, Indels: 5
0.95 0.04 0.01
Matches are distributed among these distances:
183 305 0.79
184 77 0.20
186 4 0.01
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.35
Consensus pattern (183 bp):
ATTCTGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCT
CATAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTT
CCGATGTATAAATGTCGACACTTTTTGACAAGGTATCGACACATTTTTCTTCC
Done.