genome.fa.s7321.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007321.1 Hibiscus syriacus cultivar Beakdansim tig00019539_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88857

Tables:   1   

This is table  1  of  1  ( 77 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3894--3923	15	2.0	15	100	0	60	33	40	20	6	1.78
13461--13534	21	3.3	22	80	10	87	27	25	18	28	1.98
17107--17161	25	2.2	25	80	6	67	61	0	0	38	0.96
17095--17179	34	2.5	34	96	0	152	58	0	0	41	0.98
17125--17182	18	3.3	18	72	18	68	58	0	0	41	0.98
17232--17257	5	5.2	5	100	0	52	23	57	19	0	1.40
18400--18456	27	2.2	26	84	6	71	56	0	3	40	1.17
18443--18503	25	2.4	25	81	10	70	50	1	4	42	1.33
18443--18510	25	2.6	25	78	19	68	51	1	5	41	1.35
18903--18934	6	5.2	6	92	7	55	81	0	3	15	0.82
18900--18937	13	2.8	13	88	4	58	78	0	2	18	0.86
19042--19091	22	2.2	23	82	3	57	34	12	4	50	1.58
19285--19350	31	2.1	31	88	0	96	54	12	10	22	1.68
19296--19360	31	2.1	31	94	0	112	52	10	7	29	1.64
20064--20089	4	6.5	4	100	0	52	76	0	0	23	0.78
20727--20773	20	2.3	20	96	0	85	38	19	19	23	1.93
20969--21030	18	3.0	22	69	26	62	27	38	16	17	1.91
21362--21410	20	2.5	20	82	0	62	36	24	18	20	1.94
21452--21512	20	3.0	20	82	0	68	18	18	22	40	1.91
21484--21523	20	2.0	20	95	0	71	10	15	17	57	1.64
21488--21531	20	2.2	20	83	0	52	13	13	18	54	1.71
23385--23528	20	7.5	20	80	10	167	40	20	18	21	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23573--23620	19	2.5	20	82	3	62	20	18	25	35	1.95
23661--23736	20	3.8	20	96	0	134	22	18	19	39	1.92
23808--23832	11	2.3	11	100	0	50	64	28	8	0	1.22
24068--24098	12	2.6	12	89	0	53	29	0	3	67	1.06
24242--24349	21	5.1	21	73	3	92	21	37	17	24	1.94
30248--30280	2	16.5	2	100	0	66	48	0	0	51	1.00
30305--30421	39	3.0	39	78	13	125	37	18	0	42	1.57
33119--33171	22	2.4	22	87	0	70	32	13	35	18	1.90
36290--36333	12	3.7	12	84	0	52	22	15	11	50	1.76
38313--38382	34	2.1	32	84	5	86	25	28	14	31	1.95
38597--38636	21	1.9	22	90	10	66	12	10	40	37	1.77
38715--38772	21	2.8	21	100	0	116	29	27	20	22	1.99
38948--39007	29	2.0	31	93	6	106	43	16	6	33	1.74
42612--42684	33	2.2	33	80	11	78	28	9	15	46	1.77
43472--43629	21	7.8	20	72	7	86	38	25	17	18	1.92
43596--43825	20	11.5	20	85	1	237	37	24	18	19	1.94
44507--44553	24	2.0	24	87	8	69	25	14	21	38	1.92
44728--44752	12	2.1	12	100	0	50	72	0	28	0	0.86
47086--47183	19	5.4	19	84	13	143	14	22	17	45	1.84
47067--47183	53	2.2	53	98	1	227	13	23	17	44	1.85
47242--47403	33	4.7	33	74	16	150	45	18	22	13	1.85
47242--47409	19	9.6	19	75	18	168	44	18	23	14	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47242--47409	52	3.2	52	96	0	300	44	18	23	14	1.86
47416--47496	19	4.5	19	80	16	109	14	23	17	44	1.86
47603--47639	14	2.6	14	91	0	65	45	21	0	32	1.52
49618--49674	14	3.7	14	77	20	60	45	22	21	10	1.82
49599--49691	33	2.8	33	95	0	168	47	21	20	10	1.80
49562--49696	19	7.6	19	76	16	128	45	23	19	11	1.82
49692--49820	19	7.3	19	75	17	125	8	17	28	45	1.77
49692--49783	33	2.8	33	93	3	150	7	18	28	45	1.76
49864--50335	93	5.1	93	98	1	903	45	19	12	22	1.83
49864--50335	185	2.6	185	97	0	901	45	19	12	22	1.83
52042--52131	14	5.7	14	74	23	81	43	22	25	8	1.82
52034--52148	33	3.5	33	93	0	203	46	20	24	9	1.80
52041--52122	19	4.9	18	73	21	72	45	20	25	8	1.80
52089--52153	19	3.7	19	74	19	77	44	21	23	10	1.83
52165--52221	14	3.7	14	75	20	60	8	24	22	43	1.81
52149--52229	33	2.5	33	95	0	144	8	22	22	46	1.78
52206--52281	21	3.7	21	83	3	109	11	25	17	46	1.82
52205--52282	41	1.9	41	97	0	147	12	25	16	44	1.83
52361--52431	33	2.2	33	89	0	106	47	16	23	11	1.79
52613--52667	22	2.5	22	81	0	74	20	16	40	23	1.91
52813--53006	20	9.6	20	82	5	221	19	19	25	35	1.95
52813--53006	60	3.2	60	83	0	253	19	19	25	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52993--53075	21	4.0	21	73	6	78	25	16	24	33	1.96
52973--53071	42	2.4	43	77	11	100	21	18	23	37	1.94
53293--53324	15	2.2	14	94	5	55	31	6	3	59	1.38
57463--57509	23	2.0	23	100	0	94	36	4	34	25	1.76
62187--62270	6	13.5	6	80	12	98	79	0	15	4	0.89
64982--65021	18	2.2	19	90	4	64	32	5	5	57	1.42
67684--67751	19	3.5	19	83	2	82	30	16	7	45	1.74
76101--76304	74	2.7	75	86	3	270	25	29	24	21	1.99
84254--84324	29	2.3	30	90	9	117	42	2	18	36	1.65
84624--84828	75	2.7	75	88	2	288	24	30	23	20	1.98
87037--87077	21	2.0	21	85	9	57	29	24	9	36	1.87

Tables:   1

The End!