Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007323.1 Hibiscus syriacus cultivar Beakdansim tig00019543_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 75889
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.32
Found at i:377 original size:35 final size:35
Alignment explanation
Indices: 288--389 Score: 131
Period size: 33 Copynumber: 2.9 Consensus size: 35
278 ATTTATAAGT
*
288 TGGTGATAATATAGGCGTGAT-ATGGTGATGTGAATA
1 TGGTGAT-ATATAGGCGTGATAATGGTGATG-GACTA
324 T-GTGAT-TATAGGCGTGATAAT-GTGATGGACTA
1 TGGTGATATATAGGCGTGATAATGGTGATGGACTA
*
356 TGGTGATGATATAGGCATGATAATGGTGATGGAC
1 TGGTGAT-ATATAGGCGTGATAATGGTGATGGAC
390 AGATTGTATC
Statistics
Matches: 59, Mismatches: 2, Indels: 10
0.83 0.03 0.14
Matches are distributed among these distances:
32 5 0.08
33 23 0.39
34 2 0.03
35 19 0.32
36 10 0.17
ACGTcount: A:0.29, C:0.05, G:0.33, T:0.32
Consensus pattern (35 bp):
TGGTGATATATAGGCGTGATAATGGTGATGGACTA
Found at i:11678 original size:13 final size:12
Alignment explanation
Indices: 11659--11744 Score: 58
Period size: 13 Copynumber: 7.2 Consensus size: 12
11649 ATATAGGCGT
11659 GATATGGTGATG
1 GATATGGTGATG
11671 GAATATGGTGAT-
1 G-ATATGGTGATG
*
11683 GATATAGGCG-T-
1 GATAT-GGTGATG
11694 GATAATGGTGATG
1 GAT-ATGGTGATG
11707 GACTATGGTGAT-
1 GA-TATGGTGATG
*
11719 GATATAGGCG-T-
1 GATAT-GGTGATG
11730 GATAATGGTGATG
1 GAT-ATGGTGATG
11743 GA
1 GA
11745 CAGATTGTAT
Statistics
Matches: 60, Mismatches: 4, Indels: 19
0.72 0.05 0.23
Matches are distributed among these distances:
11 21 0.35
12 16 0.27
13 22 0.37
14 1 0.02
ACGTcount: A:0.29, C:0.03, G:0.37, T:0.30
Consensus pattern (12 bp):
GATATGGTGATG
Found at i:11714 original size:36 final size:36
Alignment explanation
Indices: 11641--11745 Score: 185
Period size: 36 Copynumber: 2.9 Consensus size: 36
11631 ATTTATAAGT
* *
11641 TGGTGATAATATAGGCGTGAT-ATGGTGATGGAATA
1 TGGTGATGATATAGGCGTGATAATGGTGATGGACTA
11676 TGGTGATGATATAGGCGTGATAATGGTGATGGACTA
1 TGGTGATGATATAGGCGTGATAATGGTGATGGACTA
11712 TGGTGATGATATAGGCGTGATAATGGTGATGGAC
1 TGGTGATGATATAGGCGTGATAATGGTGATGGAC
11746 AGATTGTATC
Statistics
Matches: 67, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
35 20 0.30
36 47 0.70
ACGTcount: A:0.29, C:0.05, G:0.36, T:0.30
Consensus pattern (36 bp):
TGGTGATGATATAGGCGTGATAATGGTGATGGACTA
Found at i:22817 original size:10 final size:10
Alignment explanation
Indices: 22802--22836 Score: 54
Period size: 9 Copynumber: 3.5 Consensus size: 10
22792 CTTTTCTTTC
22802 TTTCTTTTTT
1 TTTCTTTTTT
22812 TTTC-TTTTT
1 TTTCTTTTTT
22821 TTTCTTTCTTT
1 TTTCTTT-TTT
22832 TTTCT
1 TTTCT
22837 GAGTGCTTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 9 0.39
10 6 0.26
11 8 0.35
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (10 bp):
TTTCTTTTTT
Found at i:22850 original size:27 final size:27
Alignment explanation
Indices: 22820--22881 Score: 65
Period size: 27 Copynumber: 2.3 Consensus size: 27
22810 TTTTTCTTTT
* *
22820 TTTTCTTTCTT-TTTTCTGAGTGCTTGA
1 TTTTCTTTCTTCTTTT-GGAGTGCTTCA
22847 TTTT-TCTTCTTCTTTTGGAGTGCTTCA
1 TTTTCT-TTCTTCTTTTGGAGTGCTTCA
*
22874 ATTTCTTT
1 TTTTCTTT
22882 TGCTGATTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
26 1 0.03
27 23 0.79
28 5 0.17
ACGTcount: A:0.08, C:0.16, G:0.13, T:0.63
Consensus pattern (27 bp):
TTTTCTTTCTTCTTTTGGAGTGCTTCA
Found at i:22862 original size:28 final size:27
Alignment explanation
Indices: 22819--22871 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 27
22809 TTTTTTCTTT
*
22819 TTTTTCTTTCTTTTTTCTGAGTGCTTGA
1 TTTTTCTTTCTTTTTT-GGAGTGCTTGA
22847 TTTTTC-TTCTTCTTTTGGAGTGCTT
1 TTTTTCTTTCTT-TTTTGGAGTGCTT
22872 CAATTTCTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
27 13 0.57
28 10 0.43
ACGTcount: A:0.06, C:0.15, G:0.15, T:0.64
Consensus pattern (27 bp):
TTTTTCTTTCTTTTTTGGAGTGCTTGA
Found at i:22877 original size:28 final size:28
Alignment explanation
Indices: 22819--22877 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 28
22809 TTTTTTCTTT
* *
22819 TTTTTCTTTCTTTTTTCTGAGTGCTTGA
1 TTTTTCTTTCTTTTTTCGGAGTGCTTAA
22847 TTTTTC-TTCTTCTTTT-GGAGTGCTTCAA
1 TTTTTCTTTCTT-TTTTCGGAGTGCTT-AA
22875 TTT
1 TTT
22878 CTTTTGCTGA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
27 13 0.48
28 14 0.52
ACGTcount: A:0.08, C:0.15, G:0.14, T:0.63
Consensus pattern (28 bp):
TTTTTCTTTCTTTTTTCGGAGTGCTTAA
Found at i:22921 original size:11 final size:11
Alignment explanation
Indices: 22907--22931 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
22897 TTTATTTTTG
22907 TTCACTTGCAC
1 TTCACTTGCAC
22918 TTCACTTGCAC
1 TTCACTTGCAC
22929 TTC
1 TTC
22932 TTTTTGGTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.36, G:0.08, T:0.40
Consensus pattern (11 bp):
TTCACTTGCAC
Found at i:30524 original size:13 final size:13
Alignment explanation
Indices: 30506--30532 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
30496 AAACACCTTT
30506 AACATACCTTTTC
1 AACATACCTTTTC
30519 AACATACCTTTTC
1 AACATACCTTTTC
30532 A
1 A
30533 TCTTTGGCCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.30, G:0.00, T:0.37
Consensus pattern (13 bp):
AACATACCTTTTC
Found at i:32057 original size:19 final size:19
Alignment explanation
Indices: 32033--32074 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
32023 TACATGATTT
32033 TTTTAATG-AAGATACATGA
1 TTTTAATGAAAG-TACATGA
*
32052 TTTTAATGAAAGTACATGC
1 TTTTAATGAAAGTACATGA
32071 TTTT
1 TTTT
32075 GGCCGAGTGG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 18 0.86
20 3 0.14
ACGTcount: A:0.36, C:0.07, G:0.14, T:0.43
Consensus pattern (19 bp):
TTTTAATGAAAGTACATGA
Found at i:52751 original size:15 final size:17
Alignment explanation
Indices: 52715--52748 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
52705 TTTGATAACA
52715 TTTC-TATCTATTTCCT
1 TTTCTTATCTATTTCCT
52731 TTTCTTATC-ATTTCCT
1 TTTCTTATCTATTTCCT
52747 TT
1 TT
52749 CTTCTTTCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.12, C:0.24, G:0.00, T:0.65
Consensus pattern (17 bp):
TTTCTTATCTATTTCCT
Found at i:55214 original size:19 final size:20
Alignment explanation
Indices: 55180--55218 Score: 62
Period size: 19 Copynumber: 1.9 Consensus size: 20
55170 TACATAAAAA
55180 ATACATGATTTTTTAATGAAG
1 ATACATGA-TTTTTAATGAAG
55201 ATACATGA-TTTTAATGAA
1 ATACATGATTTTTAATGAA
55219 AGTGCATCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 10 0.56
21 8 0.44
ACGTcount: A:0.41, C:0.05, G:0.13, T:0.41
Consensus pattern (20 bp):
ATACATGATTTTTAATGAAG
Found at i:55518 original size:16 final size:16
Alignment explanation
Indices: 55497--55538 Score: 75
Period size: 16 Copynumber: 2.6 Consensus size: 16
55487 TGCCTAGAGA
55497 TGAACTAGGTTCAAGG
1 TGAACTAGGTTCAAGG
55513 TGAACTAGGTTCAAGG
1 TGAACTAGGTTCAAGG
*
55529 TGAGCTAGGT
1 TGAACTAGGT
55539 GAGTGTCTTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.29, C:0.12, G:0.33, T:0.26
Consensus pattern (16 bp):
TGAACTAGGTTCAAGG
Found at i:56769 original size:19 final size:20
Alignment explanation
Indices: 56741--56780 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
56731 GAATAATAAT
56741 ATAAGTAATGAAAAGAAATA
1 ATAAGTAATGAAAAGAAATA
*
56761 ATAAG-AATGAAATGAAATA
1 ATAAGTAATGAAAAGAAATA
56780 A
1 A
56781 AGAAATAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 14 0.74
20 5 0.26
ACGTcount: A:0.65, C:0.00, G:0.15, T:0.20
Consensus pattern (20 bp):
ATAAGTAATGAAAAGAAATA
Found at i:57241 original size:19 final size:21
Alignment explanation
Indices: 57191--57242 Score: 72
Period size: 19 Copynumber: 2.6 Consensus size: 21
57181 GAAATCCCTT
57191 TGAAAATACATGATTTTTAAA
1 TGAAAATACATGATTTTTAAA
*
57212 AGAAAATACATGA-TTTT-AA
1 TGAAAATACATGATTTTTAAA
*
57231 TGAAGATACATG
1 TGAAAATACATG
57243 CTCTTGGCCG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 12 0.43
20 4 0.14
21 12 0.43
ACGTcount: A:0.48, C:0.06, G:0.13, T:0.33
Consensus pattern (21 bp):
TGAAAATACATGATTTTTAAA
Found at i:59404 original size:13 final size:13
Alignment explanation
Indices: 59386--59416 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
59376 AGCCATGATT
59386 TTGAATCATCTCC
1 TTGAATCATCTCC
59399 TTGAATCATCTCC
1 TTGAATCATCTCC
59412 TTGAA
1 TTGAA
59417 AAGATATGTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.26, C:0.26, G:0.10, T:0.39
Consensus pattern (13 bp):
TTGAATCATCTCC
Found at i:60662 original size:19 final size:18
Alignment explanation
Indices: 60623--60689 Score: 75
Period size: 18 Copynumber: 3.8 Consensus size: 18
60613 TTTCCTTGGC
60623 TTTCTTTCTCTTTTGAAT
1 TTTCTTTCTCTTTTGAAT
* *
60641 TTTCTTTTTCTTTTATAAT
1 TTTCTTTCTCTTTT-GAAT
**
60660 TTTCTTTCT-TTTTGTCT
1 TTTCTTTCTCTTTTGAAT
60677 TTTCTTT-TCTTTT
1 TTTCTTTCTCTTTT
60690 TGCACTCTAA
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
16 1 0.02
17 12 0.29
18 17 0.41
19 11 0.27
ACGTcount: A:0.07, C:0.15, G:0.03, T:0.75
Consensus pattern (18 bp):
TTTCTTTCTCTTTTGAAT
Found at i:60987 original size:19 final size:20
Alignment explanation
Indices: 60959--60998 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
60949 GGAATATAAT
60959 ATAAGTAATGAAAAGAAATA
1 ATAAGTAATGAAAAGAAATA
*
60979 ATAAG-AATGAAATGAAATA
1 ATAAGTAATGAAAAGAAATA
60998 A
1 A
60999 AGAAATGATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 14 0.74
20 5 0.26
ACGTcount: A:0.65, C:0.00, G:0.15, T:0.20
Consensus pattern (20 bp):
ATAAGTAATGAAAAGAAATA
Found at i:66208 original size:17 final size:16
Alignment explanation
Indices: 66186--66248 Score: 69
Period size: 18 Copynumber: 3.9 Consensus size: 16
66176 AAATTGGGGT
66186 ACAAAAAGAAAGAAAAG
1 ACAAAAAG-AAGAAAAG
66203 ACAAAAAGAAGAAAA-
1 ACAAAAAGAAGAAAAG
66218 ATTCAGAAAAGAAGAAAAG
1 A--CA-AAAAGAAGAAAAG
66237 --AAAAAGAAGAAA
1 ACAAAAAGAAGAAA
66249 TTCAAAAAGA
Statistics
Matches: 42, Mismatches: 0, Indels: 11
0.79 0.00 0.21
Matches are distributed among these distances:
14 11 0.26
15 2 0.05
16 7 0.17
17 10 0.24
18 12 0.29
ACGTcount: A:0.75, C:0.05, G:0.17, T:0.03
Consensus pattern (16 bp):
ACAAAAAGAAGAAAAG
Found at i:66217 original size:26 final size:25
Alignment explanation
Indices: 66188--66248 Score: 61
Period size: 26 Copynumber: 2.4 Consensus size: 25
66178 ATTGGGGTAC
66188 AAAAAGAAAGAAAAGACA-AAAAGAA
1 AAAAAGAAAGAAAAGA-AGAAAAGAA
***
66213 GAAAAATTCAGAAAAGAAGAAAAGAA
1 -AAAAAGAAAGAAAAGAAGAAAAGAA
66239 AAAGAAGAAA
1 AAA-AAGAAA
66249 TTCAAAAAGA
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
25 4 0.15
26 23 0.85
ACGTcount: A:0.75, C:0.03, G:0.18, T:0.03
Consensus pattern (25 bp):
AAAAAGAAAGAAAAGAAGAAAAGAA
Found at i:66981 original size:24 final size:24
Alignment explanation
Indices: 66954--67006 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
66944 TCAAAACATC
*
66954 AAGAGATATGTCTTGT-GAATCACA
1 AAGAGACATGTCTTGTAG-ATCACA
*
66978 AAGAGACATGTCTTGTAGATCACG
1 AAGAGACATGTCTTGTAGATCACA
67002 AAGAG
1 AAGAG
67007 TCACGCCTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
24 25 0.96
25 1 0.04
ACGTcount: A:0.38, C:0.13, G:0.25, T:0.25
Consensus pattern (24 bp):
AAGAGACATGTCTTGTAGATCACA
Found at i:67798 original size:29 final size:30
Alignment explanation
Indices: 67766--67824 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
67756 CTTAGCTTTA
**
67766 TATTATGTTTACATATGTTTTAGAT-TCAT
1 TATTATGTTTACATATCATTTAGATATCAT
*
67795 TATTATGTTTGCATATCATTTAGATATCAT
1 TATTATGTTTACATATCATTTAGATATCAT
67825 GGCAACATGT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 22 0.85
30 4 0.15
ACGTcount: A:0.29, C:0.08, G:0.10, T:0.53
Consensus pattern (30 bp):
TATTATGTTTACATATCATTTAGATATCAT
Found at i:68722 original size:19 final size:21
Alignment explanation
Indices: 68698--68749 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
68688 CGGCCAAGAG
*
68698 CATGTATCTTCA-TT-AAAAT
1 CATGTATTTTCATTTAAAAAT
68717 CATGTATTTTCATTTAAAAAT
1 CATGTATTTTCATTTAAAAAT
68738 CATGTATTTTCA
1 CATGTATTTTCA
68750 AAGGGGTTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 11 0.37
20 2 0.07
21 17 0.57
ACGTcount: A:0.35, C:0.13, G:0.06, T:0.46
Consensus pattern (21 bp):
CATGTATTTTCATTTAAAAAT
Found at i:69075 original size:13 final size:13
Alignment explanation
Indices: 69057--69101 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
69047 CATTGCCATT
*
69057 TCATCATCATCCA
1 TCATCAACATCCA
*
69070 TCATCAACATCCT
1 TCATCAACATCCA
*
69083 TCATCAAGA-CCA
1 TCATCAACATCCA
69095 TCATCAA
1 TCATCAA
69102 TTCCATAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
12 9 0.32
13 19 0.68
ACGTcount: A:0.36, C:0.36, G:0.02, T:0.27
Consensus pattern (13 bp):
TCATCAACATCCA
Found at i:70440 original size:22 final size:22
Alignment explanation
Indices: 70398--70461 Score: 60
Period size: 22 Copynumber: 2.8 Consensus size: 22
70388 TAATATAAGA
70398 AAGAAATGATTAATTGGAAATAAGA-
1 AAGAAATGA--AA-TGGAAAT-AGAT
*
70423 AATGAAA-GAAATGGAAATTGAT
1 AA-GAAATGAAATGGAAATAGAT
70445 AAGAAATGAAATGGAAA
1 AAGAAATGAAATGGAAA
70462 GAAATGATAT
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
21 6 0.17
22 19 0.54
23 2 0.06
25 4 0.11
26 4 0.11
ACGTcount: A:0.58, C:0.00, G:0.22, T:0.20
Consensus pattern (22 bp):
AAGAAATGAAATGGAAATAGAT
Found at i:70465 original size:15 final size:14
Alignment explanation
Indices: 70421--70468 Score: 60
Period size: 15 Copynumber: 3.1 Consensus size: 14
70411 TTGGAAATAA
70421 GAAATGAAAGAAAT
1 GAAATGAAAGAAAT
70435 GGAAATTGATAAGAAAT
1 -GAAA-TGA-AAGAAAT
70452 GAAATGGAAAGAAAT
1 GAAAT-GAAAGAAAT
70467 GA
1 GA
70469 TATCAAGGTA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
15 14 0.47
16 9 0.30
17 7 0.23
ACGTcount: A:0.58, C:0.00, G:0.25, T:0.17
Consensus pattern (14 bp):
GAAATGAAAGAAAT
Found at i:70465 original size:26 final size:24
Alignment explanation
Indices: 70417--70470 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 24
70407 TTAATTGGAA
70417 ATAAGAAATGAAAGAAATGGAAATTG
1 ATAAGAAATGAAAGAAA-GGAAA-TG
70443 ATAAGAAATGAAATGGAAA-GAAATG
1 ATAAGAAATGAAA--GAAAGGAAATG
70468 ATA
1 ATA
70471 TCAAGGTAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
25 5 0.19
26 17 0.65
28 4 0.15
ACGTcount: A:0.59, C:0.00, G:0.22, T:0.19
Consensus pattern (24 bp):
ATAAGAAATGAAAGAAAGGAAATG
Found at i:73628 original size:20 final size:19
Alignment explanation
Indices: 73579--73628 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 19
73569 CGGGCAAGAG
*
73579 CATGTATTTTCATTAAAGT
1 CATGTATTTTCATTAAAAT
* *
73598 CTTGTTTTTTTCATTAAAAT
1 CATG-TATTTTCATTAAAAT
73618 CATGTCATTTT
1 CATGT-ATTTT
73629 AGGAAGGTAC
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
19 4 0.17
20 20 0.83
ACGTcount: A:0.26, C:0.12, G:0.08, T:0.54
Consensus pattern (19 bp):
CATGTATTTTCATTAAAAT
Found at i:75611 original size:24 final size:21
Alignment explanation
Indices: 75577--75619 Score: 50
Period size: 23 Copynumber: 1.9 Consensus size: 21
75567 TCCACAAGAT
*
75577 ATGTCCTTTGACATTTCAAATG
1 ATGTCCTTTGA-AATTCAAATG
75599 ATGTACCTCTTGAAATTCAAA
1 ATGT-CCT-TTGAAATTCAAA
75620 AGAATGAGCC
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
22 4 0.22
23 10 0.56
24 4 0.22
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.37
Consensus pattern (21 bp):
ATGTCCTTTGAAATTCAAATG
Done.