Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007324.1 Hibiscus syriacus cultivar Beakdansim tig00019545_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89345

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2884--2952
33
2.1
33
83
5
86
31
1
36
30
1.67
2934--3034
35
2.9
36
89
4
152
29
3
35
30
1.76
11088--11136
20
2.4
21
89
3
73
48
14
14
22
1.79
11716--11758
17
2.5
17
76
0
50
27
16
13
41
1.86
11751--11816
17
4.1
16
75
15
57
34
16
9
39
1.80
11765--11789
13
1.9
13
100
0
50
32
16
12
40
1.84
25972--26012
13
3.3
13
93
6
68
0
9
7
82
0.83
25961--26036
24
3.2
22
75
20
64
0
7
10
81
0.87
25961--26037
34
2.2
34
84
11
95
0
7
11
80
0.90
37643--37667
10
2.5
10
100
0
50
92
8
0
0
0.40
44136--44164
15
2.0
15
93
6
51
0
20
3
75
0.94
44157--44218
27
2.2
28
80
2
72
11
17
11
59
1.60
46724--46765
13
3.4
12
80
12
50
7
14
4
73
1.21
46719--46765
24
1.9
25
87
12
71
6
17
4
72
1.22
47512--47562
19
2.6
20
90
3
77
43
5
13
37
1.69
48420--48445
13
2.0
13
100
0
52
38
0
30
30
1.58
48791--48833
20
2.2
20
87
4
61
51
6
9
32
1.61
50539--50600
8
8.0
8
75
13
67
82
11
6
0
0.84
50541--50599
7
7.9
7
77
19
57
83
10
6
0
0.82
50541--50599
15
3.9
14
75
20
57
83
10
6
0
0.82
50557--50597
14
2.8
14
92
7
64
80
9
9
0
0.91
50574--50611
20
1.9
20
88
0
58
78
10
10
0
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56656--56688
16
2.1
16
100
0
66
42
6
18
33
1.75
63037--63119
11
7.6
11
77
9
55
0
9
10
79
0.94
63048--63118
11
6.5
11
79
9
74
0
8
8
83
0.82
63037--63109
22
3.2
23
81
11
87
0
10
9
79
0.94
65957--65989
16
2.1
16
94
0
57
45
6
15
33
1.70
70384--70414
11
2.8
11
95
0
53
64
9
9
16
1.48
74215--74264
18
2.8
17
82
11
55
6
12
6
76
1.16
81194--81369
90
2.0
90
94
0
307
38
10
6
44
1.65
82334--82402
33
2.1
33
97
0
129
27
17
17
37
1.92
88246--88314
24
2.8
24
93
2
120
59
15
11
13
1.61
88303--88335
14
2.4
14
90
10
50
78
0
21
0
0.75

Tables:   1

The End!