genome.fa.s7327.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007327.1 Hibiscus syriacus cultivar Beakdansim tig00019578_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101844

Tables:   1   

This is table  1  of  1  ( 80 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4363--4410	22	2.2	21	82	10	53	16	4	22	56	1.58
5151--5232	43	1.9	43	92	0	137	25	9	31	32	1.88
6233--6281	21	2.4	21	86	3	73	32	26	18	22	1.97
6821--6996	89	2.0	90	90	3	284	38	10	4	46	1.58
7747--7806	20	2.9	21	80	5	86	38	18	20	23	1.93
8347--8512	90	1.8	90	94	2	298	35	10	6	46	1.65
10167--10234	22	3.1	22	95	0	118	35	19	22	23	1.96
13209--13524	84	3.8	84	82	4	361	24	18	23	34	1.96
13588--13986	124	3.2	124	89	0	618	27	19	22	30	1.98
14797--14835	7	5.9	7	82	11	55	2	12	0	84	0.72
14797--14835	20	2.0	20	94	0	69	2	12	0	84	0.72
14797--14836	13	3.2	12	86	10	53	2	12	0	85	0.71
22777--22814	17	2.1	19	90	9	62	71	5	7	15	1.28
29615--29667	3	17.3	3	88	3	79	66	1	1	30	1.13
29861--30363	40	11.7	41	73	12	324	23	18	32	25	1.97
29907--30370	46	10.7	46	72	13	263	23	19	32	25	1.98
29861--30313	89	5.3	84	73	11	311	22	18	32	25	1.97
29857--30376	129	4.0	129	93	0	783	23	18	32	26	1.97
30561--30739	66	2.8	63	76	8	171	37	15	21	25	1.93
30714--30809	35	2.7	35	96	3	176	33	10	22	33	1.88
30714--30845	72	1.9	70	81	12	162	37	10	19	32	1.86
31578--31765	37	5.5	36	66	21	125	43	11	12	32	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31615--31812	30	6.1	30	68	15	126	41	12	12	33	1.80
31560--31795	67	3.5	67	95	0	418	44	11	12	31	1.78
31744--31821	30	2.7	29	81	15	90	43	15	8	32	1.78
31800--31903	52	2.0	53	92	3	174	36	16	13	33	1.88
31895--32024	30	4.1	30	73	21	122	42	12	12	33	1.80
31870--32007	67	2.1	67	95	0	249	44	11	14	29	1.81
31956--32032	30	2.7	29	82	13	97	42	15	9	32	1.78
31658--32152	212	2.3	212	97	0	936	41	13	13	31	1.83
32012--32114	52	1.9	53	90	3	163	35	15	13	34	1.87
32107--32260	29	5.3	29	88	6	133	42	14	11	31	1.81
32126--32256	29	4.6	28	89	4	183	43	14	11	30	1.81
32101--32256	57	2.7	55	83	8	188	43	14	11	30	1.80
32126--32260	57	2.4	57	86	3	191	43	14	11	30	1.80
32504--32635	36	3.7	36	79	7	119	34	13	18	34	1.90
32575--32807	105	2.3	101	83	9	276	36	12	21	30	1.89
32781--32875	36	2.6	36	78	6	86	35	10	18	34	1.86
32965--33082	36	3.3	35	80	9	139	35	12	16	34	1.87
34627--34685	17	3.4	17	72	11	57	0	16	11	71	1.15
34628--34747	11	10.5	12	68	21	71	1	17	10	70	1.22
34642--34742	46	2.2	44	78	13	105	1	17	9	70	1.24
34681--34723	19	2.2	19	87	4	59	2	20	9	67	1.30
34692--34742	26	2.0	25	84	3	66	1	21	9	66	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35336--35429	46	2.1	45	85	2	125	38	10	25	25	1.88
37530--37591	31	2.0	32	96	3	117	62	9	12	14	1.53
41219--41267	3	16.3	3	86	0	71	67	2	2	28	1.13
42315--42365	20	2.5	20	90	0	84	33	13	21	31	1.92
45516--45606	3	29.7	3	88	4	137	37	0	0	62	0.95
58266--58400	7	20.3	7	90	6	203	85	0	14	0	0.61
58270--58387	1	118.0	1	72	0	92	86	0	13	0	0.57
60263--60462	95	2.1	95	94	1	348	38	14	14	33	1.86
60758--61755	113	8.8	113	96	0	1676	37	14	17	30	1.90
61259--61303	24	1.9	23	82	13	56	51	6	24	17	1.70
61485--61529	24	1.9	23	82	13	56	51	6	24	17	1.70
61700--61978	118	2.3	121	80	7	284	41	15	18	24	1.89
62120--62192	3	23.7	3	80	5	83	41	0	0	58	0.98
64816--64986	29	5.9	29	84	3	211	28	9	15	47	1.76
71637--71675	19	2.0	21	90	10	64	46	5	10	38	1.60
71810--71875	31	2.1	31	83	5	80	30	19	18	31	1.96
71863--71956	30	3.1	30	90	3	136	20	21	27	30	1.98
77072--77352	53	5.2	55	82	6	292	27	27	13	31	1.94
77121--77352	107	2.2	107	88	0	347	26	28	13	31	1.94
77389--77594	52	3.9	53	83	5	251	23	24	19	31	1.98
77389--77594	51	3.9	52	83	4	254	23	24	19	31	1.98
77389--77594	103	2.0	105	83	3	263	23	24	19	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77998--78152	36	4.3	36	89	3	231	18	20	25	36	1.95
78880--79181	124	2.4	124	88	2	430	22	27	17	32	1.96
83047--83183	21	6.6	21	81	9	74	17	21	21	38	1.93
83065--83183	21	5.7	21	80	7	109	18	22	21	37	1.94
83093--83172	42	1.9	42	92	0	133	20	20	21	38	1.93
83071--83183	42	2.7	42	81	8	131	17	23	20	38	1.93
89277--89304	8	3.5	8	100	0	56	39	0	10	50	1.37
89924--89968	21	2.1	21	83	0	54	31	31	24	13	1.93
90748--90844	30	3.2	30	89	2	142	20	19	27	31	1.97
96261--96303	16	2.8	15	82	6	59	51	0	0	48	1.00
97175--97200	5	5.2	5	100	0	52	57	0	0	42	0.98
100419--100462	22	2.0	23	86	13	65	47	2	0	50	1.13
101237--101266	15	2.0	15	100	0	60	46	0	6	46	1.29
101689--101721	17	2.0	17	88	5	50	48	3	12	36	1.56

Tables:   1

The End!