genome.fa.s7328.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007328.1 Hibiscus syriacus cultivar Beakdansim tig00019586_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106281

Tables:   1   

This is table  1  of  1  ( 88 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
592--625	17	2.0	17	88	0	50	73	2	0	23	0.97
1211--1425	72	2.9	74	88	7	321	58	13	1	26	1.44
3734--3774	17	2.4	17	100	0	82	73	0	0	26	0.84
4406--4552	74	2.0	72	88	3	215	59	9	2	28	1.43
6139--6174	16	2.2	17	95	5	65	8	13	13	63	1.50
6379--6424	11	4.3	11	78	15	51	78	6	4	10	1.08
6377--6416	21	2.0	20	90	5	62	82	5	2	10	0.91
9679--9712	15	2.3	15	94	0	59	5	29	23	41	1.78
11362--11412	15	3.4	15	94	0	84	60	0	1	37	1.08
11362--11412	10	5.1	10	92	0	84	60	0	1	37	1.08
11482--11512	15	2.0	16	93	6	55	70	3	0	25	1.02
12160--12197	19	2.0	19	89	0	58	47	15	0	36	1.46
12142--12290	74	2.0	75	88	4	219	58	10	0	30	1.37
12145--12317	76	2.3	75	85	6	226	56	10	1	31	1.40
14084--14619	158	3.4	155	82	5	594	28	19	5	46	1.72
14904--14935	2	17.0	2	87	12	50	50	0	0	50	1.00
15015--15050	14	2.6	14	95	0	63	36	22	13	27	1.92
15618--15799	60	3.0	58	82	7	204	40	5	20	33	1.75
15708--15809	31	3.4	30	72	13	93	41	5	19	33	1.76
18923--18957	13	2.8	13	95	4	63	31	17	37	14	1.89
18971--19179	93	2.3	92	93	3	357	33	21	34	11	1.88
19067--19226	61	2.6	61	97	1	295	33	22	33	10	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19240--19377	29	4.8	29	96	1	242	14	31	31	22	1.94
19428--19501	37	2.0	37	97	2	141	16	45	13	24	1.83
19627--19672	23	2.0	23	100	0	92	47	4	39	8	1.54
19676--19741	4	16.5	4	76	9	55	63	0	34	1	1.04
19627--19687	23	2.6	23	86	5	59	50	6	36	6	1.54
19675--19733	21	2.9	21	94	2	102	62	0	35	1	1.05
19895--20024	44	3.0	42	79	16	117	40	0	12	47	1.41
20187--20233	16	3.0	16	84	9	53	29	0	10	59	1.31
20208--20238	15	2.1	14	94	5	53	38	0	6	54	1.26
22383--22415	17	1.9	17	93	0	57	45	12	6	36	1.66
22513--22871	26	13.4	26	74	20	203	45	9	1	43	1.47
22548--22583	11	3.4	11	88	3	56	58	5	0	36	1.22
22521--22929	124	3.3	124	94	2	689	45	9	1	43	1.47
25755--25813	26	2.3	24	78	16	64	40	3	8	47	1.51
26622--26684	28	2.2	30	91	5	103	57	11	0	31	1.34
26626--26691	28	2.4	28	85	10	98	56	10	0	33	1.34
26661--26709	21	2.3	21	85	3	71	53	16	0	30	1.43
27200--27257	25	2.3	25	79	5	64	24	43	15	17	1.87
27316--27395	29	2.8	29	98	0	151	16	30	33	20	1.94
29543--29589	13	3.5	13	77	13	51	55	2	2	40	1.24
31050--31102	3	17.7	3	96	0	97	64	0	1	33	1.05
31419--32194	113	6.9	113	93	1	1200	29	18	13	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32926--33661	83	8.9	83	97	0	1384	37	23	12	25	1.91
34795--34843	6	7.7	6	82	13	53	0	18	0	81	0.69
34802--34848	10	5.1	9	85	10	60	0	17	0	82	0.66
34796--34851	24	2.3	23	85	11	69	0	17	0	82	0.68
34802--34848	19	2.6	18	86	10	60	0	17	0	82	0.66
34804--34851	9	5.2	9	80	12	53	0	18	0	81	0.70
44451--44492	17	2.5	17	88	3	59	64	0	4	30	1.14
44455--44498	17	2.4	19	77	14	56	65	0	4	29	1.12
45121--45167	13	3.5	13	77	13	51	55	2	2	40	1.24
46533--46583	3	17.0	3	100	0	102	66	0	0	33	0.92
47411--47551	35	4.0	35	85	2	167	22	25	19	32	1.97
47416--47551	71	1.9	71	86	3	193	22	25	19	32	1.98
50224--50306	29	2.8	29	92	1	139	43	9	14	32	1.78
54992--55074	29	2.8	29	92	1	139	43	9	14	32	1.78
57470--57505	16	2.2	16	90	0	54	38	2	27	30	1.71
57549--57607	23	2.6	23	91	0	91	42	8	16	32	1.79
57665--58378	202	3.5	198	79	7	710	31	15	13	39	1.86
60784--60817	17	2.0	17	88	0	50	47	23	0	29	1.52
60976--61704	200	3.8	184	79	10	696	32	16	12	37	1.87
61138--61741	200	3.0	200	85	4	833	31	17	12	37	1.87
61685--61794	51	2.1	52	80	9	127	25	20	17	37	1.94
61492--61942	250	1.8	250	83	4	615	31	16	14	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64751--66069	200	6.6	200	92	0	2149	31	16	13	38	1.88
64751--66070	599	2.2	599	93	1	2261	31	16	13	38	1.88
68251--68316	33	2.0	33	93	0	114	22	46	0	30	1.52
68350--68393	21	2.1	21	91	0	70	15	31	11	40	1.83
70595--71056	182	2.6	181	86	4	623	27	16	14	41	1.86
77338--77429	47	2.0	47	88	0	139	59	16	11	11	1.60
77293--77429	24	5.8	24	74	6	100	59	15	13	12	1.62
77332--77419	23	3.8	23	80	3	95	59	18	11	11	1.61
77593--77642	23	2.1	24	85	3	66	56	18	12	14	1.68
77593--77649	14	4.4	14	76	17	61	56	17	12	14	1.68
81403--81474	10	6.4	10	72	22	54	8	11	22	58	1.59
81413--81467	14	4.2	14	75	17	64	7	10	25	56	1.59
81409--81474	24	2.8	24	95	0	123	9	10	22	57	1.60
82562--82603	10	4.6	10	77	22	56	11	9	19	59	1.59
82569--82599	16	1.9	16	100	0	62	9	12	19	58	1.62
84970--85042	37	2.0	37	91	0	119	39	6	9	43	1.64
90896--90943	24	2.0	24	95	0	87	25	31	16	27	1.97
94782--95101	157	2.0	160	95	2	585	32	13	11	42	1.80
96060--96092	2	16.5	2	100	0	66	48	0	0	51	1.00
96484--96541	2	30.0	2	79	6	66	48	0	0	51	1.00
98529--98595	32	2.1	32	82	0	80	23	10	19	46	1.81
100411--100452	21	2.0	22	90	4	68	45	4	7	42	1.52

Tables:   1

The End!