genome.fa.s7329.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007329.1 Hibiscus syriacus cultivar Beakdansim tig00019594_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80837

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6205--6235	7	4.4	7	100	0	62	25	29	29	16	1.96
6232--6289	5	10.8	5	78	14	62	6	22	51	18	1.70
6225--6289	22	3.0	22	100	0	130	9	23	49	18	1.76
6286--6364	19	4.2	18	78	16	88	27	29	29	13	1.95
6311--6385	29	2.5	31	89	8	120	29	26	26	17	1.97
6286--6384	9	10.3	9	80	10	90	29	27	28	15	1.96
15390--15470	26	3.1	26	63	10	65	28	9	11	50	1.70
15536--15581	24	2.0	23	86	4	65	47	6	8	36	1.60
16633--16665	14	2.4	14	94	0	57	33	6	6	54	1.50
18892--18931	20	2.0	20	100	0	80	25	15	35	25	1.94
21631--21689	25	2.4	25	97	0	109	16	49	5	28	1.67
29423--29509	45	1.9	45	92	0	147	25	14	13	45	1.82
29706--29757	2	26.0	2	92	0	86	46	0	3	50	1.20
30706--30747	20	2.1	20	82	8	50	71	0	7	21	1.09
31793--31845	21	2.5	20	85	11	70	71	5	7	15	1.27
31793--31852	21	2.8	22	76	20	65	71	6	8	13	1.29
31921--31969	25	2.0	25	100	0	98	38	8	20	32	1.82
35579--35630	2	26.0	2	100	0	104	50	0	0	50	1.00
35803--35848	16	2.7	18	77	16	53	47	0	0	52	1.00
35916--35949	2	17.0	2	93	0	50	50	5	0	44	1.26
39999--40039	8	5.2	8	82	5	57	34	0	29	36	1.58
40120--40426	104	3.0	104	97	0	569	20	25	23	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40323--40675	128	2.8	128	96	0	661	20	24	22	32	1.98
41006--41099	21	4.5	21	85	5	118	21	27	32	18	1.96
41006--41123	42	2.8	43	76	12	129	22	24	33	19	1.97
41103--41150	21	2.3	21	88	0	69	22	12	39	25	1.89
42663--42760	17	5.6	17	69	20	51	61	4	0	34	1.15
42884--42940	18	3.4	17	73	14	55	54	1	0	43	1.10
42877--42982	33	3.2	32	80	6	95	61	3	0	34	1.14
42911--42982	34	2.2	32	80	9	83	63	5	0	30	1.17
43797--43874	37	2.1	37	85	7	104	48	1	2	47	1.23
44218--44253	2	18.0	2	100	0	72	50	0	0	50	1.00
62058--62138	21	3.8	22	77	6	71	37	1	11	50	1.46
62741--62767	7	3.9	7	100	0	54	44	0	0	55	0.99
63082--63140	8	7.2	8	73	16	50	28	0	3	67	1.06
63071--63139	18	4.1	17	73	17	63	30	0	2	66	1.06
63281--63430	45	3.2	49	67	16	145	54	1	8	36	1.38
63271--63451	91	2.0	93	95	2	330	51	1	8	38	1.43
63288--63423	41	3.1	41	68	27	116	52	1	7	38	1.38
65038--65071	15	2.3	15	90	5	52	41	0	2	55	1.15
70833--70950	24	4.9	24	87	5	139	38	20	16	23	1.92
70833--70947	48	2.4	48	88	2	160	39	20	17	23	1.92
70809--70964	48	3.2	48	78	7	129	42	19	14	23	1.87
70813--70964	72	2.1	71	79	8	173	42	19	14	23	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73418--73473	18	3.4	17	72	25	57	16	21	44	17	1.86
73437--73469	13	2.5	13	95	0	57	15	24	42	18	1.88

Tables:   1

The End!