genome.fa.s733.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000733.1 Hibiscus syriacus cultivar Beakdansim tig00001423_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  159352

Tables:   1   

This is table  1  of  1  ( 83 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3969--4013	21	2.1	21	84	8	56	46	24	0	28	1.53
5096--5132	2	18.5	2	100	0	74	48	0	0	51	1.00
5223--5283	29	2.1	29	100	0	122	40	6	4	47	1.51
6159--6199	22	1.9	21	90	5	64	24	0	4	70	1.06
7174--7218	21	2.1	21	84	8	56	37	4	0	57	1.19
7755--7792	17	2.4	16	91	8	60	50	5	0	44	1.24
8931--9081	82	1.8	82	91	0	248	29	9	7	52	1.63
10353--10463	31	3.5	31	78	10	102	40	16	10	32	1.83
10572--10619	23	2.1	23	100	0	96	35	4	8	52	1.51
11950--12088	21	6.7	19	73	16	116	20	18	26	34	1.96
11950--12088	42	3.3	42	100	0	278	20	18	26	34	1.96
14096--14349	126	2.0	126	90	0	400	37	16	16	29	1.91
14375--14436	31	2.1	29	82	11	72	37	12	14	35	1.85
24110--24139	15	2.0	15	93	0	51	56	13	0	30	1.37
28167--28205	20	2.0	20	89	0	60	66	7	10	15	1.43
29691--29763	21	3.5	21	98	0	137	13	23	9	53	1.69
31154--31195	14	3.1	14	75	6	50	33	28	21	16	1.95
33419--33456	17	2.2	18	86	9	53	60	7	5	26	1.46
41761--41796	2	18.0	2	100	0	72	50	0	0	50	1.00
44965--44989	13	1.9	13	100	0	50	36	8	24	32	1.84
45608--45650	22	2.0	22	85	0	59	18	0	9	72	1.11
47217--47264	24	2.0	24	100	0	96	8	20	20	50	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47546--47587	11	3.8	11	84	9	59	30	0	0	69	0.89
51068--51112	18	2.4	19	85	3	56	35	22	11	31	1.89
51243--51280	16	2.5	15	84	12	51	28	5	0	65	1.14
51833--51866	12	2.8	12	90	0	50	55	29	0	14	1.40
51992--52045	24	2.2	24	90	0	81	22	18	18	40	1.91
54318--54353	18	2.0	18	94	0	63	55	25	2	16	1.55
54672--54711	20	2.0	20	100	0	80	20	20	25	35	1.96
54802--54851	25	2.0	25	92	0	82	26	6	22	46	1.74
55237--55273	18	2.1	18	89	0	56	32	5	10	51	1.60
55229--55281	24	2.2	24	86	0	70	35	3	13	47	1.61
55582--55668	39	2.2	39	95	0	156	48	20	13	17	1.81
57407--57481	21	3.6	21	72	13	55	24	17	34	24	1.96
61524--61660	30	4.6	30	85	5	172	25	13	10	51	1.72
61524--61660	59	2.3	59	85	6	170	25	13	10	51	1.72
63892--63943	25	2.1	25	82	13	63	44	0	0	55	0.99
70861--70934	32	2.3	32	80	13	80	50	0	0	50	1.00
70885--70934	22	2.2	23	89	3	75	52	0	0	48	1.00
71101--71154	23	2.3	23	83	0	63	53	1	1	42	1.22
71249--71288	20	2.2	20	86	13	59	57	0	0	42	0.98
71256--71315	28	2.1	30	82	17	74	50	1	1	46	1.21
78670--78707	20	1.9	20	88	0	58	31	10	26	31	1.90
83886--83928	21	2.0	21	90	0	68	18	23	16	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83929--84003	20	3.8	20	89	0	114	42	22	17	17	1.89
83990--84056	20	3.3	20	91	0	107	31	25	19	23	1.98
85144--85176	14	2.5	13	86	13	50	48	24	21	6	1.72
85151--85177	14	1.9	14	100	0	54	44	29	18	7	1.77
87351--87443	20	4.7	20	84	4	116	35	22	20	21	1.96
87452--87519	33	2.1	33	88	5	102	16	23	19	41	1.90
89060--89146	21	4.1	21	74	0	84	22	19	36	20	1.95
89654--89734	20	4.4	19	71	17	64	17	20	20	40	1.91
91485--91539	20	2.8	20	85	0	74	49	20	16	14	1.80
91527--91599	33	2.2	34	85	7	96	39	26	20	13	1.90
91924--91985	22	2.8	22	90	0	97	20	14	37	27	1.92
92215--92254	21	1.9	21	94	0	71	45	15	20	20	1.86
92729--92803	2	37.5	2	100	0	150	50	0	49	0	1.00
99299--99399	16	6.5	15	71	18	55	62	1	0	35	1.07
99305--99337	13	2.5	13	95	0	57	69	3	0	27	1.03
99301--99427	17	7.8	16	71	16	73	59	1	0	37	1.12
99312--99436	16	8.3	14	75	19	60	59	0	0	39	1.09
99475--99515	21	2.0	21	85	9	57	58	0	2	39	1.11
105905--105963	18	3.4	16	84	11	55	33	1	0	64	1.04
105905--106023	16	7.4	16	71	20	79	33	2	0	63	1.14
105964--106017	13	4.2	13	81	13	58	33	3	1	61	1.25
105934--106011	26	3.2	26	77	13	69	34	2	0	62	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112408--112448	2	20.5	2	100	0	82	48	0	51	0	1.00
120880--121039	21	7.7	21	86	6	193	41	21	20	16	1.90
120880--121033	63	2.5	63	89	1	220	41	20	20	16	1.90
123622--123659	17	2.2	17	90	4	58	78	0	21	0	0.74
123634--123661	12	2.3	12	100	0	56	85	0	14	0	0.59
126404--126574	36	4.7	36	86	5	211	36	23	18	21	1.94
126896--128123	212	5.8	211	88	2	1526	34	17	24	23	1.96
126911--128123	320	3.8	318	86	4	1528	34	17	24	23	1.96
126896--128135	54	23.4	54	83	4	1319	34	17	24	23	1.96
128122--128282	55	2.9	55	90	0	252	34	16	19	29	1.94
128127--128315	55	3.4	55	85	4	238	32	17	18	31	1.94
138875--138934	29	2.1	28	87	3	84	46	5	5	43	1.47
149114--149293	60	3.0	60	77	11	179	41	5	20	32	1.75
149182--149274	29	3.1	29	66	11	71	44	3	19	33	1.67
151080--151119	20	2.0	21	85	14	57	42	15	2	40	1.60
151091--151161	31	2.3	31	92	0	115	35	12	2	49	1.56
153195--153224	14	2.1	14	93	0	51	30	6	6	56	1.51

Tables:   1

The End!