genome.fa.s7331.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007331.1 Hibiscus syriacus cultivar Beakdansim tig00019608_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94710

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3839--3882	7	6.4	7	81	5	54	27	29	27	15	1.96
3839--3882	20	2.1	21	87	4	63	27	29	27	15	1.96
10305--10349	19	2.4	19	82	17	58	8	24	48	17	1.75
10344--10403	10	6.3	9	77	9	57	26	28	30	15	1.96
10346--10404	19	3.1	19	87	7	84	27	28	27	16	1.97
27382--27448	18	3.7	18	89	0	98	23	19	28	28	1.98
27382--27459	18	4.3	18	88	0	93	25	21	24	28	1.99
27568--27775	42	4.9	42	80	5	229	15	58	3	21	1.53
28164--28249	39	2.2	39	89	0	136	20	38	4	36	1.74
28642--28775	36	3.7	36	85	0	169	17	51	9	21	1.73
28824--28909	42	2.0	42	95	0	154	19	45	22	12	1.84
28918--28995	27	2.8	28	81	14	83	12	48	20	17	1.80
30763--30831	31	2.2	31	84	5	86	30	14	17	37	1.90
36717--36785	30	2.3	30	87	0	93	13	24	21	40	1.89
39352--39475	45	2.8	45	90	2	169	42	8	19	29	1.80
42273--42402	6	21.8	6	73	13	83	77	3	15	3	1.03
42272--42338	7	9.9	7	81	15	79	83	1	13	1	0.79
42272--42403	13	10.5	12	73	20	76	78	3	15	3	1.02
42349--42404	28	2.2	26	84	12	71	73	3	16	7	1.20
46262--46385	45	2.8	45	89	0	194	40	7	21	30	1.80
47988--48056	23	3.0	23	80	0	84	31	24	24	18	1.98
48169--48212	23	1.9	23	85	0	61	31	22	25	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48459--48491	14	2.4	14	94	0	57	39	9	3	48	1.50
51211--51255	21	2.1	21	87	0	63	35	35	11	17	1.86
53696--53734	17	2.5	15	83	8	51	43	0	5	51	1.24
55002--55057	18	3.2	17	82	5	58	46	1	3	48	1.30
56631--56668	2	19.0	2	100	0	76	50	0	0	50	1.00
63519--63572	22	2.5	22	96	0	99	38	40	11	9	1.73
71063--71135	32	2.3	32	92	0	119	28	13	16	41	1.87
71048--71167	32	3.8	30	82	6	114	31	10	17	40	1.83
72816--72848	2	16.5	2	93	0	57	45	0	0	54	0.99
73801--73827	2	13.5	2	100	0	54	0	48	0	51	1.00
73827--73869	2	21.5	2	100	0	86	48	0	0	51	1.00
76390--76541	72	2.1	72	86	0	205	35	28	17	18	1.94
82577--82610	9	3.9	9	88	3	52	76	0	2	20	0.92
82538--82626	22	3.9	20	71	21	52	75	1	7	15	1.09
82657--82718	16	3.9	16	77	6	56	79	0	6	14	0.93
83058--83086	2	14.5	2	100	0	58	51	0	0	48	1.00
83117--83157	21	1.9	21	85	14	57	75	2	7	14	1.12
83542--83584	22	2.0	22	86	9	61	48	13	2	34	1.56
84835--85282	36	12.9	36	69	16	259	41	12	18	27	1.86
84765--84999	102	2.3	101	88	3	330	40	12	19	27	1.87
84925--85282	36	10.2	36	72	14	268	41	12	17	28	1.86
84835--85273	138	3.2	137	92	2	691	42	12	18	26	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86610--86805	95	2.1	94	86	3	277	31	17	17	33	1.94
93040--93462	100	4.1	101	80	10	412	29	24	15	30	1.95
92951--93456	55	9.7	55	79	12	430	29	23	15	31	1.95
92961--93456	260	1.9	259	85	7	693	30	22	15	31	1.95

Tables:   1

The End!