genome.fa.s7333.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007333.1 Hibiscus syriacus cultivar Beakdansim tig00019621_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  125671

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
469--498	14	2.1	14	93	0	51	26	0	23	50	1.50
1616--1751	59	2.3	60	82	5	152	34	22	2	40	1.69
3129--3158	2	15.0	2	92	0	51	46	3	0	50	1.18
7189--7235	24	2.0	24	83	8	60	27	0	46	25	1.53
9066--9118	26	2.0	26	100	0	106	41	11	32	15	1.82
14299--14334	18	2.0	18	94	0	63	16	5	13	63	1.47
22424--22482	23	2.6	23	91	0	91	61	11	8	18	1.55
29064--29097	17	2.0	17	100	0	68	41	5	11	41	1.66
31025--31067	17	2.4	18	80	3	52	41	2	0	55	1.12
32630--32671	21	2.0	21	90	0	66	50	11	11	26	1.74
32642--32732	42	2.2	42	85	0	119	41	19	14	24	1.88
34157--34195	20	2.0	20	90	5	62	10	33	12	43	1.77
35848--35912	21	3.5	20	67	28	61	30	4	18	46	1.69
35840--35961	35	3.4	36	85	6	158	32	4	18	43	1.72
40467--40527	21	3.2	20	65	29	53	31	4	19	44	1.72
40459--40578	35	3.3	36	87	6	172	32	4	18	45	1.69
41959--42001	22	1.9	23	95	4	79	44	9	4	41	1.57
50650--50683	14	2.4	14	85	0	50	61	5	0	32	1.20
50655--50679	12	2.1	12	100	0	50	60	0	0	40	0.97
50874--51014	29	4.9	29	76	7	101	39	18	20	21	1.92
52645--52689	21	2.1	22	91	4	74	33	0	4	62	1.15
53436--53481	23	2.0	23	86	0	65	52	10	15	21	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53495--53532	16	2.4	16	86	8	51	73	5	5	15	1.19
54937--54987	26	1.9	27	84	4	68	29	1	5	62	1.29
55146--55242	3	32.3	3	97	0	185	34	1	0	64	1.00
55492--55559	31	2.2	30	89	7	109	25	11	11	51	1.72
57120--57255	59	2.3	59	88	0	200	28	22	6	41	1.79
58276--58300	2	12.5	2	100	0	50	48	0	0	52	1.00
62766--62929	82	2.1	75	78	16	197	44	9	6	39	1.62
62783--62947	82	2.0	82	97	0	312	46	10	4	38	1.59
66538--66580	2	21.5	2	100	0	86	51	0	48	0	1.00
72002--72052	11	4.5	11	85	2	66	21	13	31	33	1.92
72002--72052	22	2.3	22	89	3	75	21	13	31	33	1.92
73969--74019	2	25.5	2	91	0	84	45	0	3	50	1.20
76702--76756	2	27.5	2	100	0	110	50	0	0	49	1.00
76924--76951	2	14.0	2	100	0	56	50	0	0	50	1.00
89145--89184	10	3.9	10	83	6	53	15	0	2	82	0.77
89138--89182	17	2.6	17	82	3	54	15	0	2	82	0.77
89132--89182	18	2.8	18	77	11	52	17	1	1	78	0.94
89145--89184	21	2.0	20	85	5	53	15	0	2	82	0.77
89219--89286	24	2.8	24	95	0	118	26	1	23	48	1.59
93233--94296	105	10.1	105	96	0	1860	33	24	18	23	1.97
96208--96237	9	3.3	9	100	0	60	10	0	0	90	0.47
96208--96253	9	4.7	10	84	7	51	15	0	2	82	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96286--96353	24	2.8	24	95	0	118	26	1	23	48	1.59
97909--97938	13	2.4	13	94	5	53	50	0	0	50	1.00
105088--105208	58	2.0	60	87	6	176	32	15	14	37	1.89
104917--105252	174	1.9	171	85	4	460	30	16	11	40	1.85
105668--105712	22	2.1	21	83	4	54	46	0	2	51	1.13
105752--105806	28	1.9	29	92	3	94	45	18	3	32	1.67
105725--105806	29	2.8	28	83	9	94	45	17	3	34	1.66
108770--108824	26	2.2	26	86	3	76	65	0	1	32	1.03
108794--108833	19	2.0	19	85	9	53	62	0	2	35	1.09
112514--112570	28	2.0	28	100	0	114	50	14	7	28	1.68
119699--119777	31	2.5	31	81	0	95	36	22	11	29	1.89
120301--120360	21	2.9	21	92	0	93	16	21	35	26	1.95
121195--121250	10	5.4	11	83	10	73	58	21	1	17	1.47
121192--121250	21	2.8	20	85	7	82	59	22	1	16	1.46
122824--122867	11	4.3	11	80	13	58	59	20	2	18	1.49

Tables:   1

The End!