genome.fa.s7334.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007334.1 Hibiscus syriacus cultivar Beakdansim tig00019627_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88066

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107--171	27	2.6	24	77	17	62	60	3	0	36	1.13
115--188	27	2.7	27	85	10	114	56	1	0	41	1.07
323--393	30	2.4	30	77	13	74	45	5	15	33	1.70
6582--6652	19	3.7	19	84	1	79	30	14	25	29	1.94
7151--7186	13	2.8	13	86	0	54	77	0	19	2	0.88
7143--7186	16	2.8	16	82	0	61	75	0	20	4	0.98
7402--7455	30	2.0	28	82	17	69	5	0	24	70	1.08
9487--9547	7	8.7	7	75	20	56	49	26	0	24	1.51
9481--9527	14	3.4	13	83	13	58	46	27	0	25	1.53
9475--9541	21	3.2	21	81	8	66	49	26	0	23	1.51
9488--9527	14	2.9	14	92	0	62	47	27	0	25	1.52
11902--11931	14	2.1	14	93	0	51	16	46	16	20	1.84
13904--13943	13	3.1	13	96	0	71	20	22	27	30	1.98
15995--16034	18	2.2	18	90	0	62	60	0	0	40	0.97
26369--26450	21	3.9	21	73	0	74	21	19	35	23	1.96
26929--27000	20	3.6	20	90	0	99	36	22	20	20	1.96
27028--27131	20	5.5	20	77	13	112	20	19	21	39	1.93
26990--27128	54	2.6	54	88	1	190	18	20	20	41	1.91
30069--30138	20	3.5	20	90	0	86	41	25	17	15	1.89
30510--30575	22	3.0	22	90	0	105	21	15	39	24	1.91
30771--30823	20	2.7	20	96	0	97	18	20	22	37	1.94
30820--30865	21	2.2	21	92	0	74	39	17	26	17	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34615--34645	4	7.8	4	100	0	62	25	48	0	25	1.52
38995--39044	25	2.0	24	96	3	91	66	6	0	28	1.15
39454--39537	32	2.7	32	85	3	118	57	9	14	19	1.64
49821--49867	18	2.6	18	93	0	76	23	51	14	10	1.74
49844--49877	13	2.6	13	85	0	50	20	47	17	14	1.83
49826--49906	31	2.6	31	88	0	117	18	45	19	16	1.85
49861--49895	18	1.9	18	94	0	61	17	42	22	17	1.88
49875--49903	13	2.2	13	100	0	58	17	37	24	20	1.93
51201--51235	18	1.9	18	88	0	52	54	0	17	28	1.43
54877--54906	2	15.0	2	100	0	60	50	0	0	50	1.00
61374--61455	29	2.8	29	96	1	146	31	14	13	40	1.85
66141--66222	29	2.8	29	94	1	137	31	15	13	39	1.87
67899--67941	21	2.0	21	81	0	50	27	30	25	16	1.97
68862--69946	4	273.2	4	98	1	2105	25	0	24	49	1.50
70121--70194	31	2.4	31	84	4	87	28	16	18	36	1.93
70200--70361	30	5.4	30	94	0	279	25	19	22	32	1.97
71002--71110	35	3.2	35	88	7	170	36	0	0	62	1.02
71914--72171	131	2.0	131	84	4	342	45	6	8	39	1.60
74152--74213	3	20.3	3	86	3	88	59	0	0	40	0.97
80137--80585	229	2.0	227	94	1	783	44	7	7	39	1.61
80650--80695	20	2.3	19	89	10	74	54	10	17	17	1.70
80815--80860	20	2.3	20	86	13	69	54	10	17	17	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83078--83118	21	1.9	22	90	5	66	43	14	21	19	1.87
83085--83145	21	2.9	21	80	4	61	39	16	27	16	1.90
83179--83244	33	2.0	33	90	0	105	28	0	48	22	1.51
85017--85063	19	2.6	19	90	6	71	31	2	10	55	1.46
85186--86737	196	7.9	199	96	2	2887	36	16	16	30	1.91
85186--86737	395	3.9	396	96	2	2879	36	16	16	30	1.91

Tables:   1

The End!