genome.fa.s7336.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007336.1 Hibiscus syriacus cultivar Beakdansim tig00019633_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  219927

Tables:   1   

This is table  1  of  1  ( 107 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3434--3459	7	3.7	7	100	0	52	61	0	38	0	0.96
4977--5156	2	99.5	2	69	26	109	40	1	3	55	1.26
4985--5166	7	26.3	7	77	14	157	39	1	3	56	1.23
4983--5157	12	15.9	11	78	17	145	40	1	3	55	1.24
4983--5164	51	3.6	54	72	21	98	39	1	3	56	1.23
7214--7276	31	2.0	32	82	11	78	22	7	4	65	1.38
8684--8800	53	2.3	51	91	5	198	30	5	12	50	1.64
8699--8795	20	5.3	19	67	18	62	34	5	12	48	1.63
13364--13402	20	2.0	20	85	10	53	41	5	12	41	1.65
13348--13467	53	2.3	51	92	4	197	30	5	14	50	1.66
13417--13456	20	2.0	20	90	9	64	37	5	15	42	1.68
22641--22698	8	7.6	7	88	9	62	79	1	18	0	0.82
22642--22698	15	3.7	15	82	15	71	78	1	19	0	0.83
22643--22704	7	8.6	7	86	8	63	79	1	19	0	0.82
23820--24026	110	1.9	110	86	2	299	34	21	20	23	1.96
26157--26212	26	2.2	26	87	9	80	25	8	1	64	1.32
26157--26231	26	2.8	26	80	11	73	25	12	2	60	1.45
31297--31335	2	19.5	2	100	0	78	48	0	0	51	1.00
31370--31410	16	2.7	15	84	3	55	34	9	2	53	1.47
31776--32031	131	1.9	132	86	3	365	36	7	14	41	1.73
32157--32222	2	33.0	2	90	6	107	48	1	1	48	1.20
32375--32414	19	2.0	20	90	4	64	45	7	7	40	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32459--32599	2	70.0	2	76	14	67	43	10	2	43	1.51
32544--32611	12	5.8	12	78	13	52	45	4	1	48	1.31
33600--33640	16	2.6	16	100	0	82	31	19	19	29	1.96
33616--33668	21	2.5	21	75	9	54	35	22	16	24	1.95
34452--34491	17	2.3	18	95	4	73	60	0	0	40	0.97
35087--35143	28	2.1	27	90	3	87	61	1	5	31	1.28
35362--35510	80	1.9	80	97	0	280	44	27	4	22	1.72
39912--39957	24	1.9	24	86	0	65	34	23	26	15	1.94
39954--40031	23	3.4	23	85	0	111	30	25	21	21	1.98
42017--42182	83	2.0	83	97	0	314	28	24	9	37	1.87
46754--46792	11	3.5	11	85	0	60	56	10	0	33	1.33
46749--46792	22	2.0	22	100	0	88	54	9	0	36	1.32
47475--47519	20	2.2	20	96	0	81	28	33	13	24	1.93
47854--47913	24	2.5	24	100	0	120	41	13	0	45	1.43
50721--50756	15	2.3	17	81	18	51	27	5	27	38	1.79
60644--60730	2	43.5	2	97	0	165	49	0	50	0	1.00
61248--61273	2	13.0	2	100	0	52	50	0	0	50	1.00
63874--63931	24	2.4	24	82	0	71	12	17	41	29	1.85
63889--63939	24	2.1	24	85	0	66	11	17	45	25	1.83
65024--65082	21	2.8	21	84	0	82	8	25	40	25	1.83
67597--67621	3	8.3	3	100	0	50	32	32	36	0	1.58
68738--68778	20	2.0	20	86	9	57	51	0	7	41	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69625--69769	65	2.2	64	81	7	177	28	24	19	27	1.98
69645--69785	64	2.2	63	79	11	144	28	23	20	27	1.99
75384--75441	17	3.4	17	97	0	107	41	10	6	41	1.66
75591--75628	16	2.4	16	100	0	76	18	26	18	36	1.94
75607--75702	44	2.2	44	81	10	115	25	28	21	25	1.99
77723--77774	19	2.7	19	90	0	77	30	30	19	19	1.96
77657--77819	84	2.0	83	83	1	209	29	24	20	25	1.99
77791--77839	19	2.6	19	84	9	57	24	28	20	26	1.99
82185--82246	20	3.0	20	77	15	63	29	0	0	70	0.87
82192--82246	20	2.8	20	89	8	69	29	0	0	70	0.87
82183--82252	15	4.4	15	72	18	52	25	0	0	74	0.82
86787--86818	16	2.0	16	100	0	64	31	25	25	18	1.98
89865--89908	18	2.4	18	81	7	54	45	0	0	54	0.99
89820--89903	24	3.9	21	69	23	59	44	2	0	53	1.13
90014--90051	3	12.7	3	100	0	76	34	0	0	65	0.93
90720--90746	14	1.9	14	100	0	54	14	22	11	51	1.73
95441--95467	13	2.1	13	100	0	54	70	14	7	7	1.32
96124--96181	30	1.9	30	92	0	98	31	13	8	46	1.74
96123--96188	30	2.2	30	86	0	96	33	15	7	43	1.74
97677--97738	28	2.2	28	94	0	106	46	9	30	12	1.74
97870--97943	30	2.5	30	84	0	94	35	16	18	29	1.93
99185--99348	29	5.7	29	80	2	186	20	20	19	39	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99185--99348	58	2.8	58	83	0	211	20	20	19	39	1.93
99188--99348	87	1.9	87	83	7	211	21	19	19	39	1.93
100505--100548	13	3.3	13	81	6	52	18	9	25	47	1.77
101110--101136	14	1.9	14	100	0	54	29	0	14	55	1.40
107920--107956	14	2.5	15	91	4	58	29	29	16	24	1.96
123416--123450	18	1.9	19	88	11	56	74	0	5	20	1.02
123640--123789	51	2.9	51	75	9	137	54	12	12	20	1.70
123857--123888	17	1.9	16	93	6	55	56	6	15	21	1.62
125285--125378	40	2.3	42	82	10	106	30	22	15	30	1.95
125825--125996	91	1.9	91	84	2	229	25	22	14	37	1.92
128903--128975	28	2.6	28	84	2	92	23	4	32	39	1.74
128897--128975	29	2.8	29	82	1	97	22	3	34	39	1.72
129617--129718	31	3.3	29	74	17	84	4	19	0	74	1.06
129635--129715	13	6.8	12	77	14	62	4	20	0	74	1.01
129631--129717	9	9.3	9	76	19	65	4	20	0	74	0.99
149841--149881	18	2.3	18	87	8	57	0	34	19	46	1.50
153863--153902	21	1.9	21	85	10	55	37	7	2	52	1.43
170116--170313	58	3.4	58	89	1	290	22	18	20	38	1.93
171612--171706	47	2.0	47	97	0	181	27	17	7	47	1.74
174170--174205	4	9.0	4	100	0	72	25	0	0	75	0.81
177294--177369	29	2.6	30	80	17	88	75	3	19	1	1.04
178819--178915	36	2.7	35	79	7	97	27	16	11	44	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
178921--179112	39	5.0	39	85	1	244	30	20	14	34	1.92
179128--179213	36	2.4	36	86	0	109	26	19	12	40	1.88
179041--179240	101	2.0	102	91	1	330	31	19	12	37	1.89
179278--179434	66	2.4	66	86	1	215	27	23	13	35	1.92
179383--179435	16	3.0	16	76	17	52	28	24	9	37	1.86
180921--180970	26	2.0	25	84	4	64	22	10	2	66	1.32
185476--185587	45	2.5	45	86	0	143	14	20	26	38	1.91
187752--187867	3	38.3	3	98	1	223	32	0	0	67	0.91
192409--192445	19	1.9	19	88	0	56	13	27	35	24	1.93
192428--192501	23	3.2	24	86	5	116	20	22	35	21	1.96
192427--192512	24	3.7	23	86	4	120	20	24	31	23	1.98
199082--199111	15	2.0	15	93	0	51	23	3	20	53	1.60
206976--207037	32	1.9	32	90	6	83	19	24	8	48	1.75
210349--210441	20	4.7	20	80	5	116	37	22	20	19	1.94
210428--210474	20	2.3	20	88	0	67	31	29	19	19	1.96
210349--210460	60	1.9	60	86	1	163	36	23	20	19	1.95
211313--211366	24	2.2	24	90	0	81	20	16	20	42	1.89
218101--218161	31	2.0	29	87	12	88	26	29	22	21	1.99
219643--219686	21	2.1	21	86	0	61	9	36	15	38	1.80

Tables:   1

The End!