Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007338.1 Hibiscus syriacus cultivar Beakdansim tig00019664_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 236009
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
File 1 of 2
Found at i:1889 original size:3 final size:3
Alignment explanation
Indices: 1881--1958 Score: 156
Period size: 3 Copynumber: 26.0 Consensus size: 3
1871 TACTTAAACA
1881 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1929 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1959 GAGGACTCAT
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 75 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:2562 original size:13 final size:13
Alignment explanation
Indices: 2544--2568 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2534 AAAATATCAT
2544 AAATAATATTATA
1 AAATAATATTATA
2557 AAATAATATTAT
1 AAATAATATTAT
2569 TTAAACTATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
AAATAATATTATA
Found at i:7610 original size:75 final size:76
Alignment explanation
Indices: 7412--7619 Score: 289
Period size: 75 Copynumber: 2.8 Consensus size: 76
7402 CAAAGCCAAA
* * **
7412 AATTACAGATTGCTCAGAGGGAACCGATTCCCCCCATAGGAGGAACCGATT-CCCCCTAAATGGT
1 AATTCCAGAATGCTCAGAGGGAACCGATTCCCCCCATAGGAGGAACCGATTCCCCCCTAAACAGT
7476 TTTGGCCCGAG
66 TTTGGCCCGAG
*
7487 ATTTCCAGAATGCTCAGAGGGAACCGATTCCCCCCATAGGAGGAACCGATTCCCCCCTAAACAGT
1 AATTCCAGAATGCTCAGAGGGAACCGATTCCCCCCATAGGAGGAACCGATTCCCCCCTAAACAGT
7552 TTT-GCTCCGAG
66 TTTGGC-CCGAG
* * * *
7563 AATTCCAGTATGCTCGGAGGGAACCGA-TCTCCCCCA-AGGGGGTACCGATTCCCCCCT
1 AATTCCAGAATGCTCAGAGGGAACCGATTC-CCCCCATAGGAGGAACCGATTCCCCCCT
7620 TGTACAACGG
Statistics
Matches: 120, Mismatches: 10, Indels: 6
0.88 0.07 0.04
Matches are distributed among these distances:
75 71 0.59
76 49 0.41
ACGTcount: A:0.25, C:0.31, G:0.23, T:0.21
Consensus pattern (76 bp):
AATTCCAGAATGCTCAGAGGGAACCGATTCCCCCCATAGGAGGAACCGATTCCCCCCTAAACAGT
TTTGGCCCGAG
Found at i:15401 original size:17 final size:17
Alignment explanation
Indices: 15381--15428 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
15371 TTTTAACATT
15381 TTTGATATTTTGGATTG
1 TTTGATATTTTGGATTG
15398 TTTGAT-TTTGTGGATTG
1 TTTGATATTT-TGGATTG
*
15415 -TTG-GATTTTGGATT
1 TTTGATATTTTGGATT
15429 TATGAATAGT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
15 6 0.21
16 9 0.32
17 13 0.46
ACGTcount: A:0.15, C:0.00, G:0.27, T:0.58
Consensus pattern (17 bp):
TTTGATATTTTGGATTG
Found at i:16223 original size:75 final size:76
Alignment explanation
Indices: 16015--16221 Score: 274
Period size: 75 Copynumber: 2.7 Consensus size: 76
16005 CAAAGCCAAA
* * * **
16015 AATTACAGATTGCTCAGAGGGAACCGATTCCCCCCCATAGGAGGAACCGATTCCCCCTAAATGGT
1 AATTCCAGAATGCTCGGAGGGAACCGA-TCCCCCCCATAGGAGGAACCGATTCCCCCTAAACAGT
16080 TTTGGCCCCGAG
65 TTTGGCCCCGAG
* * * *
16092 ATTTCCAGAATGCTCGTAGGGAACCGATTCCTCCCATAGGAGGAACCGATTCCCCCTAAACAGTT
1 AATTCCAGAATGCTCGGAGGGAACCGATCCCCCCCATAGGAGGAACCGATTCCCCCTAAACAGTT
*
16157 TT-GCTCCGAG
66 TTGGCCCCGAG
* * *
16167 AATTCCAGTATGCTCGGAGGGAACCGATCCCCCCCA-AGGGGGTACCGATTCCCCC
1 AATTCCAGAATGCTCGGAGGGAACCGATCCCCCCCATAGGAGGAACCGATTCCCCC
16222 CTTGTACAAC
Statistics
Matches: 113, Mismatches: 17, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
74 17 0.15
75 38 0.34
76 36 0.32
77 22 0.19
ACGTcount: A:0.25, C:0.31, G:0.23, T:0.21
Consensus pattern (76 bp):
AATTCCAGAATGCTCGGAGGGAACCGATCCCCCCCATAGGAGGAACCGATTCCCCCTAAACAGTT
TTGGCCCCGAG
Found at i:21153 original size:31 final size:31
Alignment explanation
Indices: 21117--21189 Score: 137
Period size: 31 Copynumber: 2.4 Consensus size: 31
21107 TAAAAATAAT
21117 AAAAATAATTACGAAATATACTGTCTGGTTA
1 AAAAATAATTACGAAATATACTGTCTGGTTA
*
21148 AAAAATAATTACGAAATATACTGTTTGGTTA
1 AAAAATAATTACGAAATATACTGTCTGGTTA
21179 AAAAATAATTA
1 AAAAATAATTA
21190 AGACGTAAAT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.49, C:0.07, G:0.11, T:0.33
Consensus pattern (31 bp):
AAAAATAATTACGAAATATACTGTCTGGTTA
Found at i:21372 original size:19 final size:19
Alignment explanation
Indices: 21323--21381 Score: 61
Period size: 19 Copynumber: 3.1 Consensus size: 19
21313 ATATTAGGAA
21323 AATTA-TGAATAATAA--T
1 AATTATTGAATAATAATTT
*
21339 AATAATATGAGATAATAATTT
1 AATTAT-TGA-ATAATAATTT
21360 AATTATTGAATAATAAATTT
1 AATTATTGAATAAT-AATTT
21380 AA
1 AA
21382 AATTTGAATA
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
16 4 0.11
18 3 0.09
19 12 0.34
20 10 0.29
21 6 0.17
ACGTcount: A:0.54, C:0.00, G:0.07, T:0.39
Consensus pattern (19 bp):
AATTATTGAATAATAATTT
Found at i:23879 original size:13 final size:12
Alignment explanation
Indices: 23808--23879 Score: 54
Period size: 13 Copynumber: 5.7 Consensus size: 12
23798 AACAATTAAA
23808 TTTTAAAATGCAC
1 TTTTAAAAT-CAC
*
23821 TTTTAAACACCAC
1 TTTTAAA-ATCAC
* *
23834 TTTTAAAATTAG
1 TTTTAAAATCAC
* *
23846 TTTCAACATCAC
1 TTTTAAAATCAC
*
23858 TTTGAAAAATCAC
1 TTT-TAAAATCAC
23871 TTTTCAAAA
1 TTTT-AAAA
23880 GCAATGTCAA
Statistics
Matches: 45, Mismatches: 11, Indels: 6
0.73 0.18 0.10
Matches are distributed among these distances:
12 13 0.29
13 31 0.69
14 1 0.02
ACGTcount: A:0.40, C:0.18, G:0.04, T:0.38
Consensus pattern (12 bp):
TTTTAAAATCAC
Found at i:31998 original size:2 final size:2
Alignment explanation
Indices: 31991--32017 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
31981 GCAAATTTTA
31991 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
32018 ATAGGTTATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:32642 original size:25 final size:25
Alignment explanation
Indices: 32593--32644 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
32583 GCATTTGAAT
*
32593 AATTTTATATTTAAAATTTATAATA
1 AATTTTATATTTAAAAATTATAATA
*
32618 AATTTTATTTTTAAAAAATTA-AATA
1 AATTTTATATTT-AAAAATTATAATA
32643 AA
1 AA
32645 CCATTGAACT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 17 0.71
26 7 0.29
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (25 bp):
AATTTTATATTTAAAAATTATAATA
Found at i:35778 original size:18 final size:18
Alignment explanation
Indices: 35755--35791 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
35745 GGCATAAGTA
*
35755 TGGTTTCATAATCCCTTG
1 TGGTTTCACAATCCCTTG
*
35773 TGGTTTCCCAATCCCTTG
1 TGGTTTCACAATCCCTTG
35791 T
1 T
35792 TTCTGCATGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.14, C:0.27, G:0.16, T:0.43
Consensus pattern (18 bp):
TGGTTTCACAATCCCTTG
Found at i:37918 original size:17 final size:17
Alignment explanation
Indices: 37898--37931 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
37888 GCTCAATACC
37898 TAAATGAACTCAACACA
1 TAAATGAACTCAACACA
37915 TAAATGAACTCAACACA
1 TAAATGAACTCAACACA
37932 ATCACAACCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.24, G:0.06, T:0.18
Consensus pattern (17 bp):
TAAATGAACTCAACACA
Found at i:39051 original size:310 final size:311
Alignment explanation
Indices: 38488--39112 Score: 1065
Period size: 310 Copynumber: 2.0 Consensus size: 311
38478 CATCTAGCTG
* *
38488 ATGATGAAACCTTGAAGATCGTCAGAAAATGAGATATCCGATTAAAGCTGCCAAACCAGACCAAC
1 ATGATGAAACCTTGAAGATCGTCAGAAAAGGAGACATCCGATTAAAGCTGCCAAACCAGACCAAC
*
38553 TGGACGCTGAAAGGAGTGAGACATATTCCTGGCCTCAAAAGAAATCCGATTTCTGTTGGACAACT
66 TGGACGCTGAAAGGAGTGAGACATATTCCTGGCCTCAAAAAAAATCCGATTTCTGTTGGACAACT
* *
38618 TGATGGAGAAGGATATAGTACAACCTTTTCAGGTTGTGAATGGAAGATTACCAAAGGAGCACTCG
131 TGATGGAGAAGGATATAGTACAACCTTTTCAGGCTGTGAATAGAAGATTACCAAAGGAGCACTCG
* * *
38683 TTATTGCTCGTGGTAAGAAGACTGGTACTCTCTATGTAACCTCAAACTTAGAGAATATCATTGCT
196 TCATTGCTCGTGGTAAGAAGACTGATACTCTCTATGTAACCTCAAACTTAGAGAATATCATTACT
* *
38748 GTAGTAGATGCTGATGGAAGATCAAACCTATGGCACCAAAGGCTTGGCCAT
261 GCAGTAGATGCTGATGGAAGATCAAACCTACGGCACCAAAGGCTTGGCCAT
*
38799 ATGATGAAACCTTGAAGATCGTCAGAAAAGGAGACATCCGATTAAAGCTGCCAAACCATACCAAC
1 ATGATGAAACCTTGAAGATCGTCAGAAAAGGAGACATCCGATTAAAGCTGCCAAACCAGACCAAC
* ** *
38864 TGGACGCTGAAAGGAGTGAGACATA-TCATTGGCCT-AAAAAAAATCTTATTTCTGTTGGACAGC
66 TGGACGCTGAAAGGAGTGAGACATATTC-CTGGCCTCAAAAAAAATCCGATTTCTGTTGGACAAC
* * *
38927 TTGATGGAGAATGATATAGTACAACCTTTTTAGGCTGTGAATAGAAGATTACCAAATGAGCACTC
130 TTGATGGAGAAGGATATAGTACAACCTTTTCAGGCTGTGAATAGAAGATTACCAAAGGAGCACTC
38992 GTCATTGCTCGTGGTAAGAAGACTGATACTCTCTATGTAACCTCAAACTTAGAGAATATCATTAC
195 GTCATTGCTCGTGGTAAGAAGACTGATACTCTCTATGTAACCTCAAACTTAGAGAATATCATTAC
39057 TGCAGTAGATGCTGATGGAAGATCAAACCTACGGCACCAAAGGCTTGGCCAT
260 TGCAGTAGATGCTGATGGAAGATCAAACCTACGGCACCAAAGGCTTGGCCAT
39109 ATGA
1 ATGA
39113 GCGAGAAAGG
Statistics
Matches: 295, Mismatches: 18, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
310 202 0.68
311 93 0.32
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25
Consensus pattern (311 bp):
ATGATGAAACCTTGAAGATCGTCAGAAAAGGAGACATCCGATTAAAGCTGCCAAACCAGACCAAC
TGGACGCTGAAAGGAGTGAGACATATTCCTGGCCTCAAAAAAAATCCGATTTCTGTTGGACAACT
TGATGGAGAAGGATATAGTACAACCTTTTCAGGCTGTGAATAGAAGATTACCAAAGGAGCACTCG
TCATTGCTCGTGGTAAGAAGACTGATACTCTCTATGTAACCTCAAACTTAGAGAATATCATTACT
GCAGTAGATGCTGATGGAAGATCAAACCTACGGCACCAAAGGCTTGGCCAT
Found at i:56786 original size:14 final size:16
Alignment explanation
Indices: 56767--56807 Score: 59
Period size: 14 Copynumber: 2.6 Consensus size: 16
56757 AAATATTTAA
56767 AAATAAAAAA-TTAT-
1 AAATAAAAAATTTATG
56781 AAATAAATAAATTTATG
1 AAATAAA-AAATTTATG
56798 AAATAAAAAA
1 AAATAAAAAA
56808 AAGGTTAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
14 7 0.29
15 3 0.12
16 7 0.29
17 7 0.29
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (16 bp):
AAATAAAAAATTTATG
Found at i:57816 original size:23 final size:23
Alignment explanation
Indices: 57775--57835 Score: 61
Period size: 23 Copynumber: 2.7 Consensus size: 23
57765 TATATCGAAT
* * *
57775 ATTTT-TTTATTTGATTTTATAA
1 ATTTTATTTTTTTAATTTTAAAA
57797 ATTTTATTTTTTTAATTTTAAAA
1 ATTTTATTTTTTTAATTTTAAAA
* * *
57820 AATATATATTTTTAAT
1 ATTTTATTTTTTTAAT
57836 GAACTTATCA
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
22 5 0.16
23 27 0.84
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (23 bp):
ATTTTATTTTTTTAATTTTAAAA
Found at i:61669 original size:19 final size:19
Alignment explanation
Indices: 61645--61683 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
61635 TGAATGTTAC
*
61645 ATCCAATTCTTTGTATCAG
1 ATCCAATTCTTTGAATCAG
61664 ATCCAATTCTTTGAATCAG
1 ATCCAATTCTTTGAATCAG
61683 A
1 A
61684 CTTTTCATCG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.31, C:0.21, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCCAATTCTTTGAATCAG
Found at i:63645 original size:11 final size:11
Alignment explanation
Indices: 63600--63625 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
63590 TTTTTTTTTC
63600 AAAAAAACAAA
1 AAAAAAACAAA
63611 AAAAAAACAAA
1 AAAAAAACAAA
63622 AAAA
1 AAAA
63626 GGCAAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00
Consensus pattern (11 bp):
AAAAAAACAAA
Found at i:63650 original size:11 final size:10
Alignment explanation
Indices: 63600--63651 Score: 54
Period size: 10 Copynumber: 5.2 Consensus size: 10
63590 TTTTTTTTTC
63600 AAAAAAACAAA
1 AAAAAAAC-AA
63611 AAAAAAACAA
1 AAAAAAACAA
**
63621 AAAAAGGC--
1 AAAAAAACAA
63629 AAAAAAACAA
1 AAAAAAACAA
63639 AAAAAAACCAA
1 AAAAAAA-CAA
63650 AA
1 AA
63652 TTTCAAAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
8 6 0.18
10 15 0.44
11 13 0.38
ACGTcount: A:0.85, C:0.12, G:0.04, T:0.00
Consensus pattern (10 bp):
AAAAAAACAA
Found at i:63651 original size:18 final size:18
Alignment explanation
Indices: 63599--63651 Score: 61
Period size: 18 Copynumber: 2.8 Consensus size: 18
63589 ATTTTTTTTT
*
63599 CAAAAAAACAAAAAAAAAA
1 CAAAAAAA-AACAAAAAAA
**
63618 CAAAAAAAGGCAAAAAAA
1 CAAAAAAAAACAAAAAAA
63636 CAAAAAAAAACCAAAA
1 CAAAAAAAAA-CAAAA
63652 TTTCAAAAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
18 15 0.54
19 13 0.46
ACGTcount: A:0.83, C:0.13, G:0.04, T:0.00
Consensus pattern (18 bp):
CAAAAAAAAACAAAAAAA
Found at i:73348 original size:19 final size:19
Alignment explanation
Indices: 73324--73360 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
73314 ATGACCAACA
*
73324 AAATCGCAATGCGATCTCT
1 AAATCGCAACGCGATCTCT
73343 AAATCGCAACGCGATCTC
1 AAATCGCAACGCGATCTC
73361 CAGTATCGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.30, G:0.16, T:0.22
Consensus pattern (19 bp):
AAATCGCAACGCGATCTCT
Found at i:73409 original size:20 final size:20
Alignment explanation
Indices: 73386--73457 Score: 65
Period size: 20 Copynumber: 3.6 Consensus size: 20
73376 GTTTTCAGAT
* *
73386 TCGCAACGTGATTTTGACTA
1 TCGCAACGCGATTATGACTA
* * *
73406 TCGCAATGCGAATATGTA-AA
1 TCGCAACGCGATTATG-ACTA
*
73426 TCGCAACGCGATTCTGACTA
1 TCGCAACGCGATTATGACTA
*
73446 TCGCAAAGCGAT
1 TCGCAACGCGAT
73458 AATACAAAAT
Statistics
Matches: 40, Mismatches: 10, Indels: 4
0.74 0.19 0.07
Matches are distributed among these distances:
19 1 0.03
20 38 0.95
21 1 0.03
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26
Consensus pattern (20 bp):
TCGCAACGCGATTATGACTA
Found at i:73656 original size:22 final size:22
Alignment explanation
Indices: 73598--73656 Score: 82
Period size: 22 Copynumber: 2.7 Consensus size: 22
73588 TCTCTCTCTA
*
73598 CGGCGACATCCGTCCCTATCTC
1 CGGCGAAATCCGTCCCTATCTC
* *
73620 CGACGAAACCCGTCCCTATCTC
1 CGGCGAAATCCGTCCCTATCTC
*
73642 CGGCGAAATCTGTCC
1 CGGCGAAATCCGTCC
73657 ATCTCCATCT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.19, C:0.42, G:0.19, T:0.20
Consensus pattern (22 bp):
CGGCGAAATCCGTCCCTATCTC
Found at i:75961 original size:20 final size:20
Alignment explanation
Indices: 75938--76011 Score: 112
Period size: 20 Copynumber: 3.7 Consensus size: 20
75928 GAAACTTAAA
75938 ATCGCAACGCGAAAATGACT
1 ATCGCAACGCGAAAATGACT
*
75958 ATCGCAACGCGGAAATGACT
1 ATCGCAACGCGAAAATGACT
**
75978 ATCGCAACGCGAATTTGACT
1 ATCGCAACGCGAAAATGACT
*
75998 ATCGCAATGCGAAA
1 ATCGCAACGCGAAA
76012 TAAAAATCGC
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.36, C:0.24, G:0.22, T:0.18
Consensus pattern (20 bp):
ATCGCAACGCGAAAATGACT
Found at i:75982 original size:40 final size:39
Alignment explanation
Indices: 75919--76032 Score: 129
Period size: 40 Copynumber: 2.9 Consensus size: 39
75909 AGAAGAATAG
* *
75919 TCGCAACACGAAACTTAAAATCGCAACGCGAAAATGACTA
1 TCGCAACGCGAAA-TAAAAATCGCAACGCGAAAATGACTA
* ** **
75959 TCGCAACGCGGAAATGACTATCGCAACGCGAATTTGACTA
1 TCGCAACGC-GAAATAAAAATCGCAACGCGAAAATGACTA
* *
75999 TCGCAATGCGAAATAAAAATCGCAACGTGAAAAT
1 TCGCAACGCGAAATAAAAATCGCAACGCGAAAAT
76033 CGCAATGCGA
Statistics
Matches: 60, Mismatches: 13, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
39 19 0.32
40 37 0.62
41 4 0.07
ACGTcount: A:0.41, C:0.23, G:0.18, T:0.18
Consensus pattern (39 bp):
TCGCAACGCGAAATAAAAATCGCAACGCGAAAATGACTA
Found at i:76049 original size:20 final size:20
Alignment explanation
Indices: 75919--76063 Score: 106
Period size: 20 Copynumber: 7.6 Consensus size: 20
75909 AGAAGAATAG
* * *
75919 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAAATGAAAA
**
75939 TCGCAACGCGAAAATGACTA
1 TCGCAACGCGAAAATGAAAA
* **
75959 TCGCAACGCGGAAATGACTA
1 TCGCAACGCGAAAATGAAAA
** **
75979 TCGCAACGCGAATTTGACTA
1 TCGCAACGCGAAAATGAAAA
* *
75999 TCGCAATGCG-AAATAAAAA
1 TCGCAACGCGAAAATGAAAA
76018 TCGCAA--CG----TGAAAA
1 TCGCAACGCGAAAATGAAAA
*
76032 TCGCAATGCGAAAATGAAAA
1 TCGCAACGCGAAAATGAAAA
76052 TCGCAACGCGAA
1 TCGCAACGCGAA
76064 TTTAGTTTCG
Statistics
Matches: 102, Mismatches: 17, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
14 11 0.11
16 2 0.02
17 2 0.02
19 10 0.10
20 77 0.75
ACGTcount: A:0.42, C:0.23, G:0.19, T:0.16
Consensus pattern (20 bp):
TCGCAACGCGAAAATGAAAA
Found at i:76133 original size:20 final size:20
Alignment explanation
Indices: 76108--76175 Score: 118
Period size: 20 Copynumber: 3.4 Consensus size: 20
76098 CAATTATCTT
76108 GTTGCGATAGTCAAATTCGC
1 GTTGCGATAGTCAAATTCGC
76128 GTTGCGATAGTCAAATTCGC
1 GTTGCGATAGTCAAATTCGC
*
76148 GTTGCAATAGTCAAATTCGC
1 GTTGCGATAGTCAAATTCGC
*
76168 GTTACGAT
1 GTTGCGAT
76176 TTTAAGTTTT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 45 1.00
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (20 bp):
GTTGCGATAGTCAAATTCGC
Found at i:76731 original size:18 final size:21
Alignment explanation
Indices: 76690--76767 Score: 77
Period size: 21 Copynumber: 3.7 Consensus size: 21
76680 CTCACTTGTC
76690 ATCGTTCAAGAGGCCTCTCCT
1 ATCGTTCAAGAGGCCTCTCCT
* *
76711 ATCGTTCAAGAGGCCCCT-AT
1 ATCGTTCAAGAGGCCTCTCCT
** * *
76731 CATCCCTCAAGAGTCCTCTCCC
1 -ATCGTTCAAGAGGCCTCTCCT
*
76753 ATCGTTGAAGAGGCC
1 ATCGTTCAAGAGGCC
76768 CTTGTCATCG
Statistics
Matches: 43, Mismatches: 12, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
20 1 0.02
21 42 0.98
ACGTcount: A:0.22, C:0.35, G:0.19, T:0.24
Consensus pattern (21 bp):
ATCGTTCAAGAGGCCTCTCCT
Found at i:76785 original size:42 final size:42
Alignment explanation
Indices: 76684--76803 Score: 143
Period size: 42 Copynumber: 2.9 Consensus size: 42
76674 GCCCGACTCA
* *
76684 CTTGTCATCGTTCAAGAGGCCTCTCCTATCGTTCAAGAGGCC
1 CTTGTCATCGTTCAAGAGTCCTCTCCCATCGTTCAAGAGGCC
* * ** *
76726 CCTATCATCCCTCAAGAGTCCTCTCCCATCGTTGAAGAGGCC
1 CTTGTCATCGTTCAAGAGTCCTCTCCCATCGTTCAAGAGGCC
* *
76768 CTTGTCATCGTTGAAGAGATCC-ATCCCATCGTTCAA
1 CTTGTCATCGTTCAAGAG-TCCTCTCCCATCGTTCAA
76804 CATTCCGATT
Statistics
Matches: 63, Mismatches: 14, Indels: 2
0.80 0.18 0.03
Matches are distributed among these distances:
42 60 0.95
43 3 0.05
ACGTcount: A:0.22, C:0.33, G:0.18, T:0.28
Consensus pattern (42 bp):
CTTGTCATCGTTCAAGAGTCCTCTCCCATCGTTCAAGAGGCC
Found at i:76797 original size:21 final size:21
Alignment explanation
Indices: 76749--76800 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
76739 AAGAGTCCTC
* *
76749 TCCCATCGTTGAAGAGGCCCT
1 TCCCATCGTTGAAGAGACCCA
** *
76770 TGTCATCGTTGAAGAGATCCA
1 TCCCATCGTTGAAGAGACCCA
76791 TCCCATCGTT
1 TCCCATCGTT
76801 CAACATTCCG
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.21, C:0.29, G:0.21, T:0.29
Consensus pattern (21 bp):
TCCCATCGTTGAAGAGACCCA
Found at i:78370 original size:20 final size:20
Alignment explanation
Indices: 78330--78382 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
78320 AGGTACACTT
*
78330 TCGCAACGCTAAA-CTCAAAA
1 TCGCAACGCGAAATC-CAAAA
* *
78350 TCGTAATGCGAAATCCAAAA
1 TCGCAACGCGAAATCCAAAA
78370 TCGCAACGCGAAA
1 TCGCAACGCGAAA
78383 GTCAATTCGC
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
20 26 0.96
21 1 0.04
ACGTcount: A:0.43, C:0.26, G:0.15, T:0.15
Consensus pattern (20 bp):
TCGCAACGCGAAATCCAAAA
Found at i:78449 original size:20 final size:20
Alignment explanation
Indices: 78426--78482 Score: 105
Period size: 20 Copynumber: 2.9 Consensus size: 20
78416 GCGATTTCTT
*
78426 GTTGCGATAGTCAAATTCGC
1 GTTGCGATAGTCAAATTCGA
78446 GTTGCGATAGTCAAATTCGA
1 GTTGCGATAGTCAAATTCGA
78466 GTTGCGATAGTCAAATT
1 GTTGCGATAGTCAAATT
78483 TGCGATATTC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.32
Consensus pattern (20 bp):
GTTGCGATAGTCAAATTCGA
Found at i:78487 original size:15 final size:15
Alignment explanation
Indices: 78467--78496 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
78457 CAAATTCGAG
78467 TTGCGATAGTCAAAT
1 TTGCGATAGTCAAAT
*
78482 TTGCGATATTCAAAT
1 TTGCGATAGTCAAAT
78497 GAATGTGTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.37
Consensus pattern (15 bp):
TTGCGATAGTCAAAT
Found at i:78739 original size:140 final size:140
Alignment explanation
Indices: 78482--78749 Score: 482
Period size: 140 Copynumber: 1.9 Consensus size: 140
78472 ATAGTCAAAT
* *
78482 TTGCGATATTCAAATGAATGTGTAATAAGTGATAACAACTGAACATATCATAGCAATGTTCAAAC
1 TTGCAATATTCAAATGAATGTGTAATAAGTGATAACAACTGAACAGATCATAGCAATGTTCAAAC
* *
78547 TCAAGTTACTAATACATGCCTAACTGAAAATGTTAAAAGTTTACATATAAAATACACATAATAGT
66 TCAAGTTACTAATACATGCCTAACTGAAAATGTTAAAAGTTTACACATAAAATAAACATAATAGT
78612 CAAATTTGCG
131 CAAATTTGCG
*
78622 TTGCAATATTCAAATGAATGTGTAATAAGTGATAACAACTGAACAGATCATAGCCATGTTCAAAC
1 TTGCAATATTCAAATGAATGTGTAATAAGTGATAACAACTGAACAGATCATAGCAATGTTCAAAC
*
78687 TCAAGTTACTAATACATGTCTAACTGAAAATGTTAAAAGTTTACACATAAAATAAACATAATA
66 TCAAGTTACTAATACATGCCTAACTGAAAATGTTAAAAGTTTACACATAAAATAAACATAATA
78750 CAACGTTTGC
Statistics
Matches: 122, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
140 122 1.00
ACGTcount: A:0.44, C:0.14, G:0.12, T:0.29
Consensus pattern (140 bp):
TTGCAATATTCAAATGAATGTGTAATAAGTGATAACAACTGAACAGATCATAGCAATGTTCAAAC
TCAAGTTACTAATACATGCCTAACTGAAAATGTTAAAAGTTTACACATAAAATAAACATAATAGT
CAAATTTGCG
Found at i:80895 original size:14 final size:14
Alignment explanation
Indices: 80876--80902 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
80866 TCCCGTGGTA
80876 TTTTCTTCGGGGAC
1 TTTTCTTCGGGGAC
80890 TTTTCTTCGGGGA
1 TTTTCTTCGGGGA
80903 TTTCTTATTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.07, C:0.19, G:0.30, T:0.44
Consensus pattern (14 bp):
TTTTCTTCGGGGAC
Found at i:81874 original size:20 final size:20
Alignment explanation
Indices: 81849--81889 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
81839 TTGAAATGCA
81849 GCGTTGCGACAGTCAGAATC
1 GCGTTGCGACAGTCAGAATC
*
81869 GCGTTGCGATAGTCAGAATC
1 GCGTTGCGACAGTCAGAATC
81889 G
1 G
81890 AGATTAGAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.24, C:0.22, G:0.32, T:0.22
Consensus pattern (20 bp):
GCGTTGCGACAGTCAGAATC
Found at i:87130 original size:20 final size:20
Alignment explanation
Indices: 87036--87364 Score: 403
Period size: 20 Copynumber: 16.4 Consensus size: 20
87026 GATTTTCCAT
* ** *
87036 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGTATCCGTA
* *
87056 AATCGCAACGCG-AACACATA
1 AATCGCAACGCGTATC-CGTA
87076 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
87096 AATCGCAACGTGTATCCGTA
1 AATCGCAACGCGTATCCGTA
**
87116 AATCGCAACGCGTATGGGTA
1 AATCGCAACGCGTATCCGTA
*
87136 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
87156 TATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
87176 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
* *
87196 AACCGCAACGTGTATCCGTA
1 AATCGCAACGCGTATCCGTA
87216 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
87236 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
87256 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
87276 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
* * *
87296 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGTATCCGTA
*
87316 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
* * *
87336 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGTATCCGTA
*
87356 AATCACAAC
1 AATCGCAAC
87365 ACTGAAATTT
Statistics
Matches: 269, Mismatches: 34, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
19 2 0.01
20 265 0.99
21 2 0.01
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.20
Consensus pattern (20 bp):
AATCGCAACGCGTATCCGTA
Found at i:88077 original size:24 final size:24
Alignment explanation
Indices: 88038--88084 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
88028 AAATTTGGTC
88038 TTGGTCAATATCCGGACTTTGATA
1 TTGGTCAATATCCGGACTTTGATA
*
88062 TTGGTCAATA-CACGGATTTTGAT
1 TTGGTCAATATC-CGGACTTTGAT
88085 GATGTTTCAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (24 bp):
TTGGTCAATATCCGGACTTTGATA
Found at i:88276 original size:12 final size:12
Alignment explanation
Indices: 88259--88283 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
88249 ATATAATCCT
88259 GAAGAAGAAAAA
1 GAAGAAGAAAAA
88271 GAAGAAGAAAAA
1 GAAGAAGAAAAA
88283 G
1 G
88284 TCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:90609 original size:19 final size:19
Alignment explanation
Indices: 90587--90912 Score: 405
Period size: 19 Copynumber: 18.4 Consensus size: 19
90577 CGGAAAATAC
*
90587 AATCGCAACGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
90606 AATCCCAA--C---ATGAA
1 AATCGCAATGCGAAATGAA
90620 AATCGCAATGCGGAAATGAA
1 AATCGCAATGC-GAAATGAA
*
90640 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
90654 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
90673 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
90692 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
90706 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
90725 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
90744 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
90758 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
90777 AATCGCAATGCGAAATTAA
1 AATCGCAATGCGAAATGAA
*
90796 AATCGCAATACGAAATGAA
1 AATCGCAATGCGAAATGAA
90815 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
90834 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
90853 AATCGCAA--CGAAA-G--
1 AATCGCAATGCGAAATGAA
90867 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
90886 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
90905 AATCGCAA
1 AATCGCAA
90913 CGAGATAATC
Statistics
Matches: 269, Mismatches: 12, Indels: 52
0.81 0.04 0.16
Matches are distributed among these distances:
14 50 0.19
15 3 0.01
16 13 0.05
17 12 0.04
18 4 0.01
19 174 0.65
20 13 0.05
ACGTcount: A:0.47, C:0.18, G:0.21, T:0.14
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:90674 original size:33 final size:34
Alignment explanation
Indices: 90587--90912 Score: 321
Period size: 33 Copynumber: 9.2 Consensus size: 34
90577 CGGAAAATAC
* *
90587 AATCGCAACGCGAAATGAAAATCCCAAC-ATGAA
1 AATCGCAATGCGAAATGAAAATCGCAACGATGAA
*
90620 AATCGCAATGCGGAAATGAAAATCGCAACGA-GAG
1 AATCGCAATGC-GAAATGAAAATCGCAACGATGAA
90654 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAA--CG--ATGAA
*
90692 AATCGCAA--CG--A-GAGAATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAA--CG--ATGAA
*
90725 AATCGCAATGCGAAATGAAAATCGCAACGA-GAG
1 AATCGCAATGCGAAATGAAAATCGCAACGATGAA
*
90758 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATTAA
1 AATCGCAATGCGAAATGAAAATCGCAA--CG--ATGAA
*
90796 AATCGCAATACGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAA--CG--ATGAA
90834 AATCGCAATGCGAAATGAAAATCGCAACGA--AA
1 AATCGCAATGCGAAATGAAAATCGCAACGATGAA
90866 GAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
1 -AATCGCAATGCGAAATGAAAATCGCAA--CG--ATGAA
90905 AATCGCAA
1 AATCGCAA
90913 CGAGATAATC
Statistics
Matches: 257, Mismatches: 12, Indels: 43
0.82 0.04 0.14
Matches are distributed among these distances:
32 2 0.01
33 111 0.43
34 32 0.12
35 9 0.04
36 6 0.02
37 4 0.02
38 91 0.35
39 2 0.01
ACGTcount: A:0.47, C:0.18, G:0.21, T:0.14
Consensus pattern (34 bp):
AATCGCAATGCGAAATGAAAATCGCAACGATGAA
Found at i:90848 original size:161 final size:157
Alignment explanation
Indices: 90615--90934 Score: 552
Period size: 161 Copynumber: 2.0 Consensus size: 157
90605 AAATCCCAAC
*
90615 ATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCA
1 ATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAAAATCGCAATGCGAAATGAAAATCGCA
*
90680 ATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAA
66 ATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAA
90745 ATCGCAACGAGAGAATCGCAATGCGAA
131 ATCGCAACGAGAGAATCGCAATGCGAA
*
90772 ATGAAAATCGCAATGC-GAAATTAAAATCGCAATACGAAATGAAAATCGCAATGCGAAATGAAAA
1 ATGAAAATCGCAATGCGGAAATGAAAATCGC-A-ACG--A-GAAAATCGCAATGCGAAATGAAAA
90836 TCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAA
61 TCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAA
*
90901 TGAAAATCGCAACGAGATAATCGCAATGCGAA
126 TGAAAATCGCAACGAGAGAATCGCAATGCGAA
90933 AT
1 AT
90935 TATAAACGCA
Statistics
Matches: 154, Mismatches: 4, Indels: 6
0.94 0.02 0.04
Matches are distributed among these distances:
156 13 0.08
157 17 0.11
158 3 0.02
160 1 0.01
161 120 0.78
ACGTcount: A:0.47, C:0.17, G:0.22, T:0.15
Consensus pattern (157 bp):
ATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAAAATCGCAATGCGAAATGAAAATCGCA
ATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAA
ATCGCAACGAGAGAATCGCAATGCGAA
Found at i:90950 original size:52 final size:52
Alignment explanation
Indices: 90615--90934 Score: 550
Period size: 52 Copynumber: 6.0 Consensus size: 52
90605 AAATCCCAAC
90615 ATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGC-GAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
90668 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
90720 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
* *
90772 ATGAAAATCGCAATGCGAAATTAAAATCGCAATACGAAATGAAAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGC-A-ACG--A-GAGAATCGCAATGCGAA
*
90829 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
*
90881 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGATAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
90933 AT
1 AT
90935 TATAAACGCA
Statistics
Matches: 255, Mismatches: 7, Indels: 11
0.93 0.03 0.04
Matches are distributed among these distances:
52 184 0.72
53 18 0.07
54 3 0.01
55 3 0.01
56 2 0.01
57 45 0.18
ACGTcount: A:0.47, C:0.17, G:0.22, T:0.15
Consensus pattern (52 bp):
ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
Found at i:91049 original size:19 final size:19
Alignment explanation
Indices: 90941--91041 Score: 142
Period size: 19 Copynumber: 5.6 Consensus size: 19
90931 AAATTATAAA
90941 CGCATTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
90960 CCGCATTGCGATTTTCATTT
1 -CGCATTGCGATTTTCATTT
*
90980 CGCATTGCGA--TTC-TCT
1 CGCATTGCGATTTTCATTT
90996 CG--TTGCGA-TTTCATTT
1 CGCATTGCGATTTTCATTT
91012 CGCATTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
91031 CGCATTGCGAT
1 CGCATTGCGAT
91042 AGTCATTTTT
Statistics
Matches: 74, Mismatches: 2, Indels: 11
0.85 0.02 0.13
Matches are distributed among these distances:
14 6 0.08
15 3 0.04
16 8 0.11
17 3 0.04
18 6 0.08
19 29 0.39
20 19 0.26
ACGTcount: A:0.15, C:0.24, G:0.18, T:0.44
Consensus pattern (19 bp):
CGCATTGCGATTTTCATTT
Found at i:91174 original size:13 final size:14
Alignment explanation
Indices: 91147--91182 Score: 56
Period size: 13 Copynumber: 2.6 Consensus size: 14
91137 CATCAATTAC
91147 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
91161 ACAAATCATC-TTT
1 ACAAATCAACTTTT
91174 ACAAATCAA
1 ACAAATCAA
91183 TTAAACAATC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
13 11 0.55
14 9 0.45
ACGTcount: A:0.47, C:0.22, G:0.00, T:0.31
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:91194 original size:12 final size:12
Alignment explanation
Indices: 91177--91249 Score: 53
Period size: 12 Copynumber: 6.0 Consensus size: 12
91167 CATCTTTACA
91177 AATCAATTAAAC
1 AATCAATTAAAC
*
91189 AATCAA--AAATTG
1 AATCAATTAAA--C
**
91201 AATCAACTTTTAC
1 AATCAA-TTAAAC
91214 AAATCAATTAAAC
1 A-ATCAATTAAAC
*
91227 AATCAA-AAAAC
1 AATCAATTAAAC
91238 AATCAATTAAAC
1 AATCAATTAAAC
91250 TATTGAATCA
Statistics
Matches: 46, Mismatches: 8, Indels: 14
0.68 0.12 0.21
Matches are distributed among these distances:
10 3 0.07
11 10 0.22
12 21 0.46
13 6 0.13
14 5 0.11
15 1 0.02
ACGTcount: A:0.58, C:0.16, G:0.01, T:0.25
Consensus pattern (12 bp):
AATCAATTAAAC
Found at i:93090 original size:19 final size:19
Alignment explanation
Indices: 93050--93184 Score: 137
Period size: 19 Copynumber: 7.6 Consensus size: 19
93040 TAGTTTACTT
* *
93050 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAA-TGAAAA
**
93070 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAATGAAAA
93089 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
93108 TCGCAA--CGACA-G--AA
1 TCGCAACGCGAAATGAAAA
93122 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
93141 TCGCAA--CGAAA-G--AA
1 TCGCAACGCGAAATGAAAA
93155 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
93174 TCGCAATGCGA
1 TCGCAACGCGA
93185 TTTTGGTTTC
Statistics
Matches: 97, Mismatches: 8, Indels: 21
0.77 0.06 0.17
Matches are distributed among these distances:
14 16 0.16
16 11 0.11
17 11 0.11
19 47 0.48
20 12 0.12
ACGTcount: A:0.46, C:0.24, G:0.19, T:0.10
Consensus pattern (19 bp):
TCGCAACGCGAAATGAAAA
Found at i:93125 original size:14 final size:14
Alignment explanation
Indices: 93106--93162 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
93096 GCGAAATGAA
*
93106 AATCGCAACGACAG
1 AATCGCAACGAAAG
93120 AATCGCAACGCGAAATG
1 AATCGCAA--CGAAA-G
93137 AAAATCGCAACGAAAG
1 --AATCGCAACGAAAG
93153 AATCGCAACG
1 AATCGCAACG
93163 CGAAATGAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
14 18 0.49
16 5 0.14
17 6 0.16
19 8 0.22
ACGTcount: A:0.46, C:0.25, G:0.21, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAAAG
Found at i:93129 original size:33 final size:33
Alignment explanation
Indices: 93087--93179 Score: 177
Period size: 33 Copynumber: 2.8 Consensus size: 33
93077 GCGAAACCAA
*
93087 AATCGCAACGCGAAATGAAAATCGCAACGACAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
93120 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
93153 AATCGCAACGCGAAATGAAAATCGCAA
1 AATCGCAACGCGAAATGAAAATCGCAA
93180 TGCGATTTTG
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 59 1.00
ACGTcount: A:0.47, C:0.23, G:0.20, T:0.10
Consensus pattern (33 bp):
AATCGCAACGCGAAATGAAAATCGCAACGAAAG
Found at i:93176 original size:52 final size:54
Alignment explanation
Indices: 93050--93184 Score: 131
Period size: 52 Copynumber: 2.5 Consensus size: 54
93040 TAGTTTACTT
*
93050 TCGCAACACGAAACTTAAAATCGCAACGCGAAACCAAAATCGCAACGCGAAATGAAAA
1 TCGCAAC-CGAAA-TGAAAATCGCAACGCGAAACCAAAATCGCAAC-CGAAATG-AAA
* **
93108 TCGCAA-CGACA-G--AATCGCAACGCGAAATGAAAATCGCAA-CGAAA-G-AA
1 TCGCAACCGAAATGAAAATCGCAACGCGAAACCAAAATCGCAACCGAAATGAAA
*
93155 TCGCAACGCGAAATGAAAATCGCAATGCGA
1 TCGCAAC-CGAAATGAAAATCGCAACGCGA
93185 TTTTGGTTTC
Statistics
Matches: 66, Mismatches: 6, Indels: 16
0.75 0.07 0.18
Matches are distributed among these distances:
47 8 0.12
49 5 0.08
50 6 0.09
52 37 0.56
56 4 0.06
58 6 0.09
ACGTcount: A:0.46, C:0.24, G:0.19, T:0.10
Consensus pattern (54 bp):
TCGCAACCGAAATGAAAATCGCAACGCGAAACCAAAATCGCAACCGAAATGAAA
Found at i:93202 original size:19 final size:19
Alignment explanation
Indices: 93180--93308 Score: 125
Period size: 19 Copynumber: 7.3 Consensus size: 19
93170 AAAATCGCAA
93180 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
93199 TGCGATCTT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
93213 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
93232 TGCGATTCT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
**
93246 TGCGATTTTCATTTCGCGT
1 TGCGATTTTGGTTTCGCGT
93265 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
* *
93284 TGCGATTTTAAGTTTCGTGT
1 TGCGATTTT-GGTTTCGCGT
93304 TGCGA
1 TGCGA
93309 AAGTAAACTA
Statistics
Matches: 90, Mismatches: 9, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
14 22 0.24
15 1 0.01
16 2 0.02
17 2 0.02
18 2 0.02
19 48 0.53
20 13 0.14
ACGTcount: A:0.09, C:0.17, G:0.29, T:0.46
Consensus pattern (19 bp):
TGCGATTTTGGTTTCGCGT
Found at i:93222 original size:33 final size:33
Alignment explanation
Indices: 93180--93271 Score: 150
Period size: 33 Copynumber: 2.8 Consensus size: 33
93170 AAAATCGCAA
93180 TGCGATTTTGGTTTCGCGTTGCGA-TCTTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTC-TGTCGT
93213 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
**
93246 TGCGATTTTCATTTCGCGTTGCGATT
1 TGCGATTTTGGTTTCGCGTTGCGATT
93272 TTGGTTTCGC
Statistics
Matches: 56, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
33 54 0.96
34 2 0.04
ACGTcount: A:0.08, C:0.18, G:0.28, T:0.46
Consensus pattern (33 bp):
TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
Found at i:93511 original size:93 final size:93
Alignment explanation
Indices: 93352--93731 Score: 744
Period size: 93 Copynumber: 4.1 Consensus size: 93
93342 TTGAATGGAT
93352 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
93417 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
93445 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
93510 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
93538 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATA-TATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
93602 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
93630 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
*
93695 AGTTTAGCAGAATTGGCAGCAACCGAAT
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
93723 AAATTTACT
1 AAATTTACT
93732 AAGCAATCTA
Statistics
Matches: 285, Mismatches: 1, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
92 92 0.32
93 193 0.68
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.22
Consensus pattern (93 bp):
AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
AGTTTAGCAGAATTGGCAGCAACCGAAC
Found at i:93665 original size:185 final size:186
Alignment explanation
Indices: 93352--93731 Score: 744
Period size: 185 Copynumber: 2.0 Consensus size: 186
93342 TTGAATGGAT
93352 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
93417 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
66 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
93482 TACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
131 TACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
93538 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATA-TATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
93602 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
66 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
*
93667 TACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAT
131 TACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
93723 AAATTTACT
1 AAATTTACT
93732 AAGCAATCTA
Statistics
Matches: 193, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
185 154 0.80
186 39 0.20
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.22
Consensus pattern (186 bp):
AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
TACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
Found at i:95457 original size:14 final size:14
Alignment explanation
Indices: 95435--95524 Score: 72
Period size: 14 Copynumber: 5.7 Consensus size: 14
95425 TTGAAATGAA
95435 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
95449 AATCACAACGCGAGATG
1 AATCGCAA--CGAGA-G
95466 ACAATCGCAACGAGAG
1 --AATCGCAACGAGAG
*
95482 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
95501 AATCGCAACGAGAG
1 AATCGCAACGAGAG
95515 AATCGCAACG
1 AATCGCAACG
95525 CGAAATGAAA
Statistics
Matches: 62, Mismatches: 4, Indels: 20
0.72 0.05 0.23
Matches are distributed among these distances:
14 27 0.44
15 1 0.02
16 8 0.13
17 8 0.13
18 1 0.02
19 17 0.27
ACGTcount: A:0.43, C:0.23, G:0.24, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:95472 original size:33 final size:33
Alignment explanation
Indices: 95427--95541 Score: 203
Period size: 33 Copynumber: 3.5 Consensus size: 33
95417 TCTTTTGGTT
*
95427 GAAATGAAAATCGCAACGAGAGAATCACAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
* *
95460 GAGATGACAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
95493 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
95526 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
95542 TGCGATTTTG
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 77 1.00
ACGTcount: A:0.46, C:0.21, G:0.23, T:0.10
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:95476 original size:19 final size:18
Alignment explanation
Indices: 95434--95546 Score: 79
Period size: 19 Copynumber: 6.8 Consensus size: 18
95424 GTTGAAATGA
95434 AAATCGCAA--CGAGA-G
1 AAATCGCAACGCGAGATG
*
95449 -AATCACAACGCGAGATG
1 AAATCGCAACGCGAGATG
95466 ACAATCGCAA--CGAGA-G
1 A-AATCGCAACGCGAGATG
*
95482 -AATCGCAACGCGAAATG
1 AAATCGCAACGCGAGATG
95499 AAAATCGCAA--CGAGA-G
1 -AAATCGCAACGCGAGATG
*
95515 -AATCGCAACGCGAAATG
1 AAATCGCAACGCGAGATG
*
95532 AAAATCGCAATGCGA
1 -AAATCGCAACGCGA
95547 TTTTGGTTTC
Statistics
Matches: 77, Mismatches: 6, Indels: 26
0.71 0.06 0.24
Matches are distributed among these distances:
14 23 0.30
16 15 0.19
17 12 0.16
19 27 0.35
ACGTcount: A:0.44, C:0.22, G:0.24, T:0.10
Consensus pattern (18 bp):
AAATCGCAACGCGAGATG
Found at i:95577 original size:14 final size:14
Alignment explanation
Indices: 95558--95612 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 14
95548 TTTGGTTTCG
95558 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
95572 CGTTGCGATTTCCATTTCG
1 CGTTGCGA-TT-C---TCT
95591 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
95605 CGTTGCGA
1 CGTTGCGA
95613 CAGTCATTCT
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
14 18 0.53
15 2 0.06
16 1 0.03
17 1 0.03
18 2 0.06
19 10 0.29
ACGTcount: A:0.09, C:0.27, G:0.24, T:0.40
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:95775 original size:33 final size:33
Alignment explanation
Indices: 95733--95803 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
95723 AATACTAACT
*
95733 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
* *
95766 TGAAAATCGCAACGACAGAATCGTAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
95799 TGAAA
1 TGAAA
95804 TCTAAGTGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.48, C:0.18, G:0.23, T:0.11
Consensus pattern (33 bp):
TGAAAATCGCAACGACAGAATAGCAACGCGAAA
Found at i:96037 original size:22 final size:22
Alignment explanation
Indices: 95985--96039 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
95975 TGGTTGTGAG
**
95985 GGATTTCGCCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
**
96007 GGAAATCTTCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
96029 GGATTTCTTCG
1 GGATTTCTTCG
96040 CCGTAGAGAG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.20, C:0.16, G:0.40, T:0.24
Consensus pattern (22 bp):
GGATTTCTTCGGAGATGGGGAC
Found at i:96210 original size:20 final size:20
Alignment explanation
Indices: 96185--96378 Score: 221
Period size: 20 Copynumber: 9.7 Consensus size: 20
96175 CTTTAAATAT
96185 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
96205 CGCGTTGCGATTTTATGTATTA
1 CGCGTTGCGA-TTTACGGA-TA
*
96227 -TCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
96246 CGCGTTGCGATATACGGATA
1 CGCGTTGCGATTTACGGATA
* **
96266 CGCATTGCGATTTACCCATA
1 CGCGTTGCGATTTACGGATA
96286 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
96306 CACGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
96326 CGCGTTGCGATTTATGTG-TT
1 CGCGTTGCGATTTACG-GATA
* ** *
96346 CGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATA
96366 CGCGTTGCGATTT
1 CGCGTTGCGATTT
96379 TGGAAAATCG
Statistics
Matches: 147, Mismatches: 22, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
19 2 0.01
20 128 0.87
21 15 0.10
22 2 0.01
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.36
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:96372 original size:60 final size:60
Alignment explanation
Indices: 96185--96378 Score: 253
Period size: 60 Copynumber: 3.2 Consensus size: 60
96175 CTTTAAATAT
**
96185 CGCGTTGCGATTTACGGATACGCGTTGCGATTTTATGTATTATCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGA-TTTATGTATTCGCGTTGCGATTTACGGATA
* * *** *
96246 CGCGTTGCGATATACGGATACGCATTGCGATTTACCCATACGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
* * * ** *
96306 CACGTTGCGATTTACGGATACGCGTTGCGATTTATGTGTTCGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
96366 CGCGTTGCGATTT
1 CGCGTTGCGATTT
96379 TGGAAAATCG
Statistics
Matches: 112, Mismatches: 21, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
60 84 0.75
61 28 0.25
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.36
Consensus pattern (60 bp):
CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
Found at i:96395 original size:21 final size:20
Alignment explanation
Indices: 96371--96447 Score: 57
Period size: 21 Copynumber: 3.7 Consensus size: 20
96361 ATATTCGCGT
96371 TGCGATTTTGGAAAATCGCAA
1 TGCGATTTTGGAAAATCGC-A
* * **
96392 TGCGAATTTGTACTATCGCA
1 TGCGATTTTGGAAAATCGCA
* *
96412 TCGCGATTTT-CAAGAATCGCGT
1 T-GCGATTTTGGAA-AATCGC-A
96434 TGCGATTTTGGAAA
1 TGCGATTTTGGAAA
96448 CTGATTTGCG
Statistics
Matches: 42, Mismatches: 10, Indels: 8
0.70 0.17 0.13
Matches are distributed among these distances:
20 3 0.07
21 36 0.86
22 3 0.07
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.32
Consensus pattern (20 bp):
TGCGATTTTGGAAAATCGCA
Found at i:96458 original size:20 final size:20
Alignment explanation
Indices: 96433--96484 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
96423 AAGAATCGCG
*
96433 TTGCGATTTTGGAAACTGAT
1 TTGCGATTCTGGAAACTGAT
96453 TTGCGATTCTGGAAACTGAT
1 TTGCGATTCTGGAAACTGAT
96473 TTGCGATTCTGG
1 TTGCGATTCTGG
96485 GGATCGCGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.21, C:0.13, G:0.27, T:0.38
Consensus pattern (20 bp):
TTGCGATTCTGGAAACTGAT
Found at i:96727 original size:20 final size:20
Alignment explanation
Indices: 96702--96895 Score: 221
Period size: 20 Copynumber: 9.7 Consensus size: 20
96692 CTTTAAATAT
96702 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
96722 CGCGTTGCGATTTTATGTATTA
1 CGCGTTGCGA-TTTACGGA-TA
*
96744 -TCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
96763 CGCGTTGCGATATACGGATA
1 CGCGTTGCGATTTACGGATA
* **
96783 CGCATTGCGATTTACCCATA
1 CGCGTTGCGATTTACGGATA
96803 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
96823 CACGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
96843 CGCGTTGCGATTTATGTG-TT
1 CGCGTTGCGATTTACG-GATA
* ** *
96863 CGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATA
96883 CGCGTTGCGATTT
1 CGCGTTGCGATTT
96896 TGGAAAATCG
Statistics
Matches: 147, Mismatches: 22, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
19 2 0.01
20 128 0.87
21 15 0.10
22 2 0.01
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.36
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:96889 original size:60 final size:60
Alignment explanation
Indices: 96702--96895 Score: 253
Period size: 60 Copynumber: 3.2 Consensus size: 60
96692 CTTTAAATAT
**
96702 CGCGTTGCGATTTACGGATACGCGTTGCGATTTTATGTATTATCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGA-TTTATGTATTCGCGTTGCGATTTACGGATA
* * *** *
96763 CGCGTTGCGATATACGGATACGCATTGCGATTTACCCATACGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
* * * ** *
96823 CACGTTGCGATTTACGGATACGCGTTGCGATTTATGTGTTCGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
96883 CGCGTTGCGATTT
1 CGCGTTGCGATTT
96896 TGGAAAATCG
Statistics
Matches: 112, Mismatches: 21, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
60 84 0.75
61 28 0.25
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.36
Consensus pattern (60 bp):
CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
Found at i:96912 original size:21 final size:20
Alignment explanation
Indices: 96888--96964 Score: 57
Period size: 21 Copynumber: 3.7 Consensus size: 20
96878 ATATTCGCGT
96888 TGCGATTTTGGAAAATCGCAA
1 TGCGATTTTGGAAAATCGC-A
* * **
96909 TGCGAATTTGTACTATCGCA
1 TGCGATTTTGGAAAATCGCA
* *
96929 TCGCGATTTT-CAAGAATCGCGT
1 T-GCGATTTTGGAA-AATCGC-A
96951 TGCGATTTTGGAAA
1 TGCGATTTTGGAAA
96965 CTGATTTGCG
Statistics
Matches: 42, Mismatches: 10, Indels: 8
0.70 0.17 0.13
Matches are distributed among these distances:
20 3 0.07
21 36 0.86
22 3 0.07
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.32
Consensus pattern (20 bp):
TGCGATTTTGGAAAATCGCA
Found at i:96960 original size:517 final size:517
Alignment explanation
Indices: 96087--97122 Score: 2063
Period size: 517 Copynumber: 2.0 Consensus size: 517
96077 GATTTTAGGT
96087 TTTAGGTTATGAGTTGCGATTACGGGATTTTGTCTTAATATTCTTTTTGTAATTTGAAAATAAAA
1 TTTAGGTTATGAGTTGCGATTACGGGATTTTGTCTTAATATTCTTTTTGTAATTTGAAAATAAAA
96152 TACGCGTAGCGATTATAATGGCGCTTTAAATATCGCGTTGCGATTTACGGATACGCGTTGCGATT
66 TACGCGTAGCGATTATAATGGCGCTTTAAATATCGCGTTGCGATTTACGGATACGCGTTGCGATT
96217 TTATGTATTATCGTTGCGATTTACGGATACGCGTTGCGATATACGGATACGCATTGCGATTTACC
131 TTATGTATTATCGTTGCGATTTACGGATACGCGTTGCGATATACGGATACGCATTGCGATTTACC
96282 CATACGCGTTGCGATTTACGGATACACGTTGCGATTTACGGATACGCGTTGCGATTTATGTGTTC
196 CATACGCGTTGCGATTTACGGATACACGTTGCGATTTACGGATACGCGTTGCGATTTATGTGTTC
96347 GCGTTGCGATTTTCATATTCGCGTTGCGATTTTGGAAAATCGCAATGCGAATTTGTACTATCGCA
261 GCGTTGCGATTTTCATATTCGCGTTGCGATTTTGGAAAATCGCAATGCGAATTTGTACTATCGCA
96412 TCGCGATTTTCAAGAATCGCGTTGCGATTTTGGAAACTGATTTGCGATTCTGGAAACTGATTTGC
326 TCGCGATTTTCAAGAATCGCGTTGCGATTTTGGAAACTGATTTGCGATTCTGGAAACTGATTTGC
96477 GATTCTGGGGATCGCGTTGCGATTTTTATTTCGCGTTGCGATTTTGTTGGTCATTTTGGCAAATC
391 GATTCTGGGGATCGCGTTGCGATTTTTATTTCGCGTTGCGATTTTGTTGGTCATTTTGGCAAATC
96542 CAAAAAAAGTTAGTTAAAATCGTATATTATAACTTTTTTTTGGTCACTGAGGCGATTTTCTC
456 CAAAAAAAGTTAGTTAAAATCGTATATTATAACTTTTTTTTGGTCACTGAGGCGATTTTCTC
96604 TTTAGGTTATGAGTTGCGATTACGGGATTTTGTCTTAATATTCTTTTTGTAATTTGAAAATAAAA
1 TTTAGGTTATGAGTTGCGATTACGGGATTTTGTCTTAATATTCTTTTTGTAATTTGAAAATAAAA
96669 TACGCGTAGCGATTATAATGGCGCTTTAAATATCGCGTTGCGATTTACGGATACGCGTTGCGATT
66 TACGCGTAGCGATTATAATGGCGCTTTAAATATCGCGTTGCGATTTACGGATACGCGTTGCGATT
96734 TTATGTATTATCGTTGCGATTTACGGATACGCGTTGCGATATACGGATACGCATTGCGATTTACC
131 TTATGTATTATCGTTGCGATTTACGGATACGCGTTGCGATATACGGATACGCATTGCGATTTACC
96799 CATACGCGTTGCGATTTACGGATACACGTTGCGATTTACGGATACGCGTTGCGATTTATGTGTTC
196 CATACGCGTTGCGATTTACGGATACACGTTGCGATTTACGGATACGCGTTGCGATTTATGTGTTC
96864 GCGTTGCGATTTTCATATTCGCGTTGCGATTTTGGAAAATCGCAATGCGAATTTGTACTATCGCA
261 GCGTTGCGATTTTCATATTCGCGTTGCGATTTTGGAAAATCGCAATGCGAATTTGTACTATCGCA
96929 TCGCGATTTTCAAGAATCGCGTTGCGATTTTGGAAACTGATTTGCGATTCTGGAAACTGATTTGC
326 TCGCGATTTTCAAGAATCGCGTTGCGATTTTGGAAACTGATTTGCGATTCTGGAAACTGATTTGC
96994 GATTCTGGGGATCGCGTTGCGATTTTTATTTCGCGTTGCGATTTTGTTGGTCATTTTGGCAAATC
391 GATTCTGGGGATCGCGTTGCGATTTTTATTTCGCGTTGCGATTTTGTTGGTCATTTTGGCAAATC
*
97059 CAAAAAAAGTTGGTTAAAATCGTATATTATAACTTTTTTTTGGTCACTGAGGCGATTTTCTC
456 CAAAAAAAGTTAGTTAAAATCGTATATTATAACTTTTTTTTGGTCACTGAGGCGATTTTCTC
97121 TT
1 TT
97123 AAAATAAATA
Statistics
Matches: 518, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
517 518 1.00
ACGTcount: A:0.23, C:0.16, G:0.23, T:0.38
Consensus pattern (517 bp):
TTTAGGTTATGAGTTGCGATTACGGGATTTTGTCTTAATATTCTTTTTGTAATTTGAAAATAAAA
TACGCGTAGCGATTATAATGGCGCTTTAAATATCGCGTTGCGATTTACGGATACGCGTTGCGATT
TTATGTATTATCGTTGCGATTTACGGATACGCGTTGCGATATACGGATACGCATTGCGATTTACC
CATACGCGTTGCGATTTACGGATACACGTTGCGATTTACGGATACGCGTTGCGATTTATGTGTTC
GCGTTGCGATTTTCATATTCGCGTTGCGATTTTGGAAAATCGCAATGCGAATTTGTACTATCGCA
TCGCGATTTTCAAGAATCGCGTTGCGATTTTGGAAACTGATTTGCGATTCTGGAAACTGATTTGC
GATTCTGGGGATCGCGTTGCGATTTTTATTTCGCGTTGCGATTTTGTTGGTCATTTTGGCAAATC
CAAAAAAAGTTAGTTAAAATCGTATATTATAACTTTTTTTTGGTCACTGAGGCGATTTTCTC
Found at i:96975 original size:20 final size:20
Alignment explanation
Indices: 96950--97001 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
96940 AAGAATCGCG
*
96950 TTGCGATTTTGGAAACTGAT
1 TTGCGATTCTGGAAACTGAT
96970 TTGCGATTCTGGAAACTGAT
1 TTGCGATTCTGGAAACTGAT
96990 TTGCGATTCTGG
1 TTGCGATTCTGG
97002 GGATCGCGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.21, C:0.13, G:0.27, T:0.38
Consensus pattern (20 bp):
TTGCGATTCTGGAAACTGAT
Found at i:98577 original size:19 final size:19
Alignment explanation
Indices: 98553--98624 Score: 74
Period size: 19 Copynumber: 3.5 Consensus size: 19
98543 CTATTTTAAA
98553 ATTTATTATATATCATTTT
1 ATTTATTATATATCATTTT
*
98572 ATTTATTATATTTCAATTTATT
1 ATTTATTATATATC-A-TT-TT
98594 ATTATTATTATATATC-TTTT
1 A-T-TTATTATATATCATTTT
98614 AATTTATTATA
1 -ATTTATTATA
98625 AAAAATAAAG
Statistics
Matches: 45, Mismatches: 2, Indels: 12
0.76 0.03 0.20
Matches are distributed among these distances:
19 21 0.47
20 4 0.09
21 5 0.11
22 3 0.07
23 1 0.02
24 11 0.24
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.62
Consensus pattern (19 bp):
ATTTATTATATATCATTTT
Found at i:99450 original size:15 final size:17
Alignment explanation
Indices: 99414--99451 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
99404 ATTTCAATGT
99414 ATTTAATATATCTTGCA
1 ATTTAATATATCTTGCA
*
99431 ATTTAATCTA-CTTG-A
1 ATTTAATATATCTTGCA
99446 ATTTAA
1 ATTTAA
99452 ATAAAAATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 7 0.35
16 4 0.20
17 9 0.45
ACGTcount: A:0.37, C:0.11, G:0.05, T:0.47
Consensus pattern (17 bp):
ATTTAATATATCTTGCA
Found at i:99513 original size:116 final size:113
Alignment explanation
Indices: 99360--99575 Score: 353
Period size: 117 Copynumber: 1.9 Consensus size: 113
99350 AAAGTACAAA
*
99360 AAAAATCAGAAAAAATACAAAAAAATAGTATGCTTATTTATTTAATTTCAATGTA-TTTAATATA
1 AAAAATCAGAAAAAATACAAAAAAATAGTATGCTTATTTATCTAATTTCAATGTATTTTAATATA
99424 TCTTGCAATTTAATCTACTTGAATTTAAATAAAAATTACAAAAAATCAG
66 TCTTGCAATTTAATCTACTTGAATTTAAA-AAAAATTACAAAAAATCAG
* *
99473 AAAAATCAGAAAAAATACAAAAAAAAATTAGTATGTTTATTTATCTAATTTCAATGTATTTTTAT
1 AAAAATCAGAAAAAATAC--AAAAAAA-TAGTATGCTTATTTATCTAATTTCAATGTATTTTAAT
*
99538 CTATCTTGCAATTTAATCTACTTGAATTTAAAAAAAAT
63 ATATCTTGCAATTTAATCTACTTGAATTTAAAAAAAAT
99576 CAGAAAAATT
Statistics
Matches: 95, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
113 18 0.19
115 7 0.07
116 34 0.36
117 36 0.38
ACGTcount: A:0.48, C:0.09, G:0.06, T:0.37
Consensus pattern (113 bp):
AAAAATCAGAAAAAATACAAAAAAATAGTATGCTTATTTATCTAATTTCAATGTATTTTAATATA
TCTTGCAATTTAATCTACTTGAATTTAAAAAAAATTACAAAAAATCAG
Found at i:99567 original size:15 final size:17
Alignment explanation
Indices: 99536--99568 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
99526 ATGTATTTTT
99536 ATCTATCTTGCAATTTA
1 ATCTATCTTGCAATTTA
99553 ATCTA-CTTG-AATTTA
1 ATCTATCTTGCAATTTA
99568 A
1 A
99569 AAAAAATCAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 4 0.25
17 5 0.31
ACGTcount: A:0.33, C:0.15, G:0.06, T:0.45
Consensus pattern (17 bp):
ATCTATCTTGCAATTTA
Found at i:99583 original size:116 final size:113
Alignment explanation
Indices: 99360--99583 Score: 351
Period size: 116 Copynumber: 2.0 Consensus size: 113
99350 AAAGTACAAA
*
99360 AAAAATCAGAAAAAATACAAAAAAATAGTATGCTTATTTATTTAATTTCAATGTATTTAATATAT
1 AAAAATCAGAAAAAATACAAAAAAATAGTATGCTTATTTATCTAATTTCAATGTATTTAATATAT
*
99425 CTTGCAATTTAATCTACTTGAATTTAAATAAAAATTACAAAAAATCAG
66 CTTGCAATTTAATCTACTTGAATTTAAATAAAAATCACAAAAAATCAG
* *
99473 AAAAATCAGAAAAAATACAAAAAAAAATTAGTATGTTTATTTATCTAATTTCAATGTATTTTTAT
1 AAAAATCAGAAAAAATAC--AAAAAAA-TAGTATGCTTATTTATCTAATTTCAATGTA-TTTAAT
* *
99538 CTATCTTGCAATTTAATCTACTTGAATTTAAA-AAAAATCAGAAAAA
62 ATATCTTGCAATTTAATCTACTTGAATTTAAATAAAAATCACAAAAA
99584 TTACAAAAAA
Statistics
Matches: 101, Mismatches: 6, Indels: 5
0.90 0.05 0.04
Matches are distributed among these distances:
113 18 0.18
115 7 0.07
116 40 0.40
117 36 0.36
ACGTcount: A:0.49, C:0.09, G:0.06, T:0.36
Consensus pattern (113 bp):
AAAAATCAGAAAAAATACAAAAAAATAGTATGCTTATTTATCTAATTTCAATGTATTTAATATAT
CTTGCAATTTAATCTACTTGAATTTAAATAAAAATCACAAAAAATCAG
Found at i:99851 original size:18 final size:19
Alignment explanation
Indices: 99820--99855 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
99810 TCATTTTTAA
*
99820 AAAATTAATTATTTAATTT
1 AAAATTAATAATTTAATTT
99839 AAAATT-ATAATTTAATT
1 AAAATTAATAATTTAATT
99856 ATTAATACCG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (19 bp):
AAAATTAATAATTTAATTT
Found at i:100630 original size:18 final size:18
Alignment explanation
Indices: 100607--100650 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
100597 ACGCGGGTAC
100607 ATGAAACCAAACTTGAAA
1 ATGAAACCAAACTTGAAA
*
100625 ATGAAACCAAACTTGGAA
1 ATGAAACCAAACTTGAAA
*
100643 CTGAAACC
1 ATGAAACC
100651 CAGATTAAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.50, C:0.20, G:0.14, T:0.16
Consensus pattern (18 bp):
ATGAAACCAAACTTGAAA
Found at i:102887 original size:2 final size:2
Alignment explanation
Indices: 102880--102914 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
102870 TATCAATATC
102880 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
102915 CATTGCCCGC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:109017 original size:20 final size:20
Alignment explanation
Indices: 108994--109084 Score: 155
Period size: 20 Copynumber: 4.5 Consensus size: 20
108984 CACGGAATGT
*
108994 AAGATTACCAGTGAGAATAA
1 AAGATTACCAGTGGGAATAA
*
109014 AAGATTACTAGTGGGAATAA
1 AAGATTACCAGTGGGAATAA
109034 AAGATTACCAGTGGGAATAA
1 AAGATTACCAGTGGGAATAA
*
109054 AAGATTACCAGTGTGAATAA
1 AAGATTACCAGTGGGAATAA
109074 AAGATTACCAG
1 AAGATTACCAG
109085 GGAATATGAT
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 67 1.00
ACGTcount: A:0.46, C:0.10, G:0.22, T:0.22
Consensus pattern (20 bp):
AAGATTACCAGTGGGAATAA
Found at i:109311 original size:36 final size:37
Alignment explanation
Indices: 109239--109312 Score: 91
Period size: 37 Copynumber: 2.0 Consensus size: 37
109229 AGTTGGAAAT
* *
109239 ATTTATATATTTTCTTTAACAAATTTAAATTCATAAA
1 ATTTATATATTTTCTTTAACAAATTGAAAATCATAAA
109276 ATTTATATAATTTT-TTT-ACAAAATTGAAAAT-ATAAA
1 ATTTATAT-ATTTTCTTTAAC-AAATTGAAAATCATAAA
109312 A
1 A
109313 AAGTTTAATG
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
36 8 0.24
37 20 0.61
38 5 0.15
ACGTcount: A:0.47, C:0.05, G:0.01, T:0.46
Consensus pattern (37 bp):
ATTTATATATTTTCTTTAACAAATTGAAAATCATAAA
Found at i:116586 original size:27 final size:27
Alignment explanation
Indices: 116556--116638 Score: 139
Period size: 27 Copynumber: 3.1 Consensus size: 27
116546 CAAATTTTAA
116556 AGAGAATATAATTTATTTTATTATTAG
1 AGAGAATATAATTTATTTTATTATTAG
* *
116583 AGAGACTATAATTTATTTTATTGTTAG
1 AGAGAATATAATTTATTTTATTATTAG
*
116610 AGATAATATAATTTATTTTATTATTAG
1 AGAGAATATAATTTATTTTATTATTAG
116637 AG
1 AG
116639 TCACTATTTG
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.39, C:0.01, G:0.12, T:0.48
Consensus pattern (27 bp):
AGAGAATATAATTTATTTTATTATTAG
Found at i:116676 original size:14 final size:14
Alignment explanation
Indices: 116657--116684 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
116647 TGGATTCGAA
116657 AAATATATATTATT
1 AAATATATATTATT
116671 AAATATATATTATT
1 AAATATATATTATT
116685 CGACTACAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
AAATATATATTATT
Found at i:117502 original size:160 final size:159
Alignment explanation
Indices: 117234--117532 Score: 517
Period size: 160 Copynumber: 1.9 Consensus size: 159
117224 GTAAATTATC
* * *
117234 TATCCTTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAATATATTTATTATTATCTTTAGT
1 TATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATTATATTTAGT
* *
117299 TAATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTT
66 TAATATTATTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATATTT
117364 TGTGTAAATGAAAATATCAAAAAAGTATA
131 TGTGTAAATGAAAATATCAAAAAAGTATA
*
117393 TATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTTGAAAACATATTTATTATTATATTTGG
1 TATCATTTTTATAAAAGTGTCCATACTTATTTCACTG-TGAAAACATATTTATTATTATATTTAG
* *
117458 TTAATATTATTGAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATATT
65 TTAATATTATTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATATT
117523 TTGTGTAAAT
130 TTGTGTAAAT
117533 TAAATTATTA
Statistics
Matches: 131, Mismatches: 8, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
159 36 0.27
160 95 0.73
ACGTcount: A:0.42, C:0.08, G:0.06, T:0.43
Consensus pattern (159 bp):
TATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATTATATTTAGT
TAATATTATTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATATTT
TGTGTAAATGAAAATATCAAAAAAGTATA
Found at i:117953 original size:20 final size:20
Alignment explanation
Indices: 117930--117976 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
117920 CGATATACCA
*
117930 GGTAAAAATATGATAAAACC
1 GGTAAAAAAATGATAAAACC
117950 GGTAAAAAAATGATAAAACC
1 GGTAAAAAAATGATAAAACC
117970 GGTAAAA
1 GGTAAAA
117977 CGTTACCAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.57, C:0.09, G:0.17, T:0.17
Consensus pattern (20 bp):
GGTAAAAAAATGATAAAACC
Found at i:118072 original size:181 final size:182
Alignment explanation
Indices: 117718--118190 Score: 696
Period size: 181 Copynumber: 2.6 Consensus size: 182
117708 GATCCAAATT
* * * *
117718 AAAAATGTGTCGATCCAAAACGATATAACAGGTAAAACTATGACAAAACCGGTATAGAAATGATA
1 AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATAAAAATGATA
* * * * * *
117783 AAACCGGTCAAGCGCTACCGGATACATTTAAAGTGTCGGTACTTTAATATAAGGATCGACACTTC
66 AAACCGGTAAAACGATACCGGATATATTAAAAGTGTCGATACTTTAATATAAGGATCGACACTTC
* * *
117848 GTGAATTTAAAAGAGAAACAGTTTTAAATCCTATAAAGTGTCGATACTTTTA
131 GTGAATTTAAAAGAGAAACAGTTATAAAGCCTATAAAGTGTCGATACTTTAA
* *
117900 AAAAATGTATCGATCCAAAACGATATACCAGGTAAAAATATGATAAAACCGGTAAAAAAATGATA
1 AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATAAAAATGATA
* * *
117965 AAACCGGTAAAACGTTACCAGATATATTAAAAGTGTCGATACTTT-ATATAAGGATCGACACTTT
66 AAACCGGTAAAACGATACCGGATATATTAAAAGTGTCGATACTTTAATATAAGGATCGACACTTC
* ** *
118029 GTGAATTTAAAAGAGAAGCAGTTATAGCGCCTATAATGTGTCGATACTTTAA
131 GTGAATTTAAAAGAGAAACAGTTATAAAGCCTATAAAGTGTCGATACTTTAA
* * *
118081 AAAAATATATCGATCCACAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATA
1 AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATAAAAATGATA
* *
118146 AAACCGGTAAAATGATACCGGATATATTGAAAGTGTCGATACTTT
66 AAACCGGTAAAACGATACCGGATATATTAAAAGTGTCGATACTTT
118191 CGTAAGTACG
Statistics
Matches: 261, Mismatches: 30, Indels: 1
0.89 0.10 0.00
Matches are distributed among these distances:
181 164 0.63
182 97 0.37
ACGTcount: A:0.43, C:0.14, G:0.17, T:0.26
Consensus pattern (182 bp):
AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATAAAAATGATA
AAACCGGTAAAACGATACCGGATATATTAAAAGTGTCGATACTTTAATATAAGGATCGACACTTC
GTGAATTTAAAAGAGAAACAGTTATAAAGCCTATAAAGTGTCGATACTTTAA
Found at i:118134 original size:20 final size:19
Alignment explanation
Indices: 118111--118157 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
118101 CGATATAACA
118111 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
*
118131 GGTATCAAAATGATAAAACC
1 GGTA-AAAAATGATAAAACC
118151 GGTAAAA
1 GGTAAAA
118158 TGATACCGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 19 0.79
21 3 0.12
ACGTcount: A:0.53, C:0.11, G:0.17, T:0.19
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:118159 original size:17 final size:19
Alignment explanation
Indices: 118120--118162 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
118110 AGGTAAAAAT
118120 ATGATAAAACCGGTATCAAA
1 ATGATAAAACCGG-ATCAAA
118140 ATGATAAAACCGG-T-AAA
1 ATGATAAAACCGGATCAAA
118157 ATGATA
1 ATGATA
118163 CCGGATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.39
18 1 0.04
20 13 0.57
ACGTcount: A:0.51, C:0.12, G:0.16, T:0.21
Consensus pattern (19 bp):
ATGATAAAACCGGATCAAA
Found at i:118953 original size:23 final size:23
Alignment explanation
Indices: 118922--118994 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
118912 ATAGGTAAAA
*
118922 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
118945 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
118968 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
118991 ATAT
1 ATAT
118995 TGTAAAGTGT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:119381 original size:23 final size:23
Alignment explanation
Indices: 119355--119422 Score: 100
Period size: 23 Copynumber: 3.0 Consensus size: 23
119345 GGTAAAAATG
119355 ATGTAATAGGTAGCGCTTATATA
1 ATGTAATAGGTAGCGCTTATATA
* *
119378 ATGTAATAGGTATCGTTTATATA
1 ATGTAATAGGTAGCGCTTATATA
* *
119401 ATGTAATAGGTAGTGGTTATAT
1 ATGTAATAGGTAGCGCTTATAT
119423 TGTAAAGTGT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 40 1.00
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (23 bp):
ATGTAATAGGTAGCGCTTATATA
Found at i:119555 original size:427 final size:430
Alignment explanation
Indices: 118863--119771 Score: 1761
Period size: 427 Copynumber: 2.1 Consensus size: 430
118853 TCGAGACTCG
118863 AAAATAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGA
1 AAAATAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGA
118928 TGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTAATAGGTAGTGGTTAT
66 TGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTAATAGGTAGTGGTTAT
118993 ATTGTAAAGTGTCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATT
131 ATTGTAAAGTGTCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATT
119058 TAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTAT
196 TAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTAT
119123 TTTTTACGTTACGATATATATTATTATTAAATTAAAAATTCTAAATAATATTTTATAAAATATCA
261 TTTTTACGTTACGATATATATTATTATTAAATTAAAAATTCTAAATAATATTTTATAAAATATCA
*
119188 AATAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAATATTATAGGTGGAAAACATGAA
326 AAAAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAATATTATAGGTGGAAAACATGAA
119253 ACACTATTAAAAAAAATTGAAACATAAATTACATAACTTT
391 ACACTATTAAAAAAAATTGAAACATAAATTACATAACTTT
*
119293 AAAATAAGTATCGATCCTTTTTATAAAAAGTATGGACACTATCAATATAATAGGT-AAAA-ATGA
1 AAAATAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGA
119356 TGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTAATAGGTAGTGGTTAT
66 TGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTAATAGGTAGTGGTTAT
119421 ATTGTAAAGTGTCTATCC-TTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATT
131 ATTGTAAAGTGTCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATT
119485 TAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTAT
196 TAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTAT
119550 TTTTTACGTTACGATATATATTATTATTAAATTAAAAATTCTAAATAATATTTTATAAAATATCA
261 TTTTTACGTTACGATATATATTATTATTAAATTAAAAATTCTAAATAATATTTTATAAAATATCA
*
119615 AAAAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAA
326 AAAAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAATATTATAGGTGGAAAACATGAA
119680 ACACTATTAAAAAAAATTGAAACATAAATTACATAACTTT
391 ACACTATTAAAAAAAATTGAAACATAAATTACATAACTTT
*
119720 AAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATA
1 AAAATAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATA
119772 TAATGTAATA
Statistics
Matches: 474, Mismatches: 5, Indels: 3
0.98 0.01 0.01
Matches are distributed among these distances:
427 329 0.69
428 87 0.18
429 4 0.01
430 54 0.11
ACGTcount: A:0.41, C:0.08, G:0.13, T:0.39
Consensus pattern (430 bp):
AAAATAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGA
TGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTAATAGGTAGTGGTTAT
ATTGTAAAGTGTCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATT
TAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTAT
TTTTTACGTTACGATATATATTATTATTAAATTAAAAATTCTAAATAATATTTTATAAAATATCA
AAAAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAATATTATAGGTGGAAAACATGAA
ACACTATTAAAAAAAATTGAAACATAAATTACATAACTTT
Found at i:119626 original size:30 final size:29
Alignment explanation
Indices: 119567--119633 Score: 73
Period size: 30 Copynumber: 2.2 Consensus size: 29
119557 GTTACGATAT
* *
119567 ATATTATTATTAAATTAAAAATTCTAAATA
1 ATATT-TTATAAAATTAAAAAATCTAAATA
119597 ATATTTTATAAAATATCAAAAAATC-AAATA
1 ATATTTTATAAAAT-T-AAAAAATCTAAATA
*
119627 ATTTTTT
1 ATATTTT
119634 GTGCAAATGA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
29 8 0.25
30 17 0.53
31 7 0.22
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.43
Consensus pattern (29 bp):
ATATTTTATAAAATTAAAAAATCTAAATA
Found at i:121899 original size:31 final size:33
Alignment explanation
Indices: 121844--121913 Score: 92
Period size: 31 Copynumber: 2.2 Consensus size: 33
121834 TTTGATTTTG
*
121844 TCTCCTTCATTCTCTATGATTAATTATAATTTA
1 TCTCCTTCATTCTCTATAATTAATTATAATTTA
* *
121877 TCTCCTT-ATT-TTTATAATTAATTATATTTTA
1 TCTCCTTCATTCTCTATAATTAATTATAATTTA
121908 TC-CCTT
1 TCTCCTT
121914 TGAATTGGTA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
30 4 0.12
31 20 0.59
32 3 0.09
33 7 0.21
ACGTcount: A:0.26, C:0.17, G:0.01, T:0.56
Consensus pattern (33 bp):
TCTCCTTCATTCTCTATAATTAATTATAATTTA
Found at i:123678 original size:30 final size:31
Alignment explanation
Indices: 123618--123682 Score: 105
Period size: 31 Copynumber: 2.1 Consensus size: 31
123608 TTGTTCGTTA
*
123618 AACTCACTAAAAATTTTATCTTATTTTTTTT
1 AACTCACTAAAAATTTTACCTTATTTTTTTT
*
123649 AACTTACTAAAAATTTTACCTTA-TTTTTTT
1 AACTCACTAAAAATTTTACCTTATTTTTTTT
123679 AACT
1 AACT
123683 AAAAAATAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 11 0.34
31 21 0.66
ACGTcount: A:0.34, C:0.14, G:0.00, T:0.52
Consensus pattern (31 bp):
AACTCACTAAAAATTTTACCTTATTTTTTTT
Found at i:123694 original size:30 final size:31
Alignment explanation
Indices: 123626--123694 Score: 88
Period size: 30 Copynumber: 2.3 Consensus size: 31
123616 TAAACTCACT
* **
123626 AAAAATTTTATCTTATTTTTTTTAACTTACT
1 AAAAATTTTACCTTATTTTTTTTAACTTAAA
123657 AAAAATTTTACCTTA-TTTTTTTAAC-TAAA
1 AAAAATTTTACCTTATTTTTTTTAACTTAAA
123686 AAATAATTT
1 AAA-AATTT
123695 ACTAATACTA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
29 5 0.15
30 15 0.44
31 14 0.41
ACGTcount: A:0.39, C:0.09, G:0.00, T:0.52
Consensus pattern (31 bp):
AAAAATTTTACCTTATTTTTTTTAACTTAAA
Found at i:129242 original size:15 final size:16
Alignment explanation
Indices: 129209--129247 Score: 62
Period size: 15 Copynumber: 2.5 Consensus size: 16
129199 GGGGCTAAGT
*
129209 CAGAGCAGACCCGAAG
1 CAGAGCAGACCCAAAG
129225 CAGAGCAG-CCCAAAG
1 CAGAGCAGACCCAAAG
129240 CAGAGCAG
1 CAGAGCAG
129248 TTGGAGGCCC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 14 0.64
16 8 0.36
ACGTcount: A:0.38, C:0.31, G:0.31, T:0.00
Consensus pattern (16 bp):
CAGAGCAGACCCAAAG
Found at i:132904 original size:55 final size:55
Alignment explanation
Indices: 132838--132950 Score: 163
Period size: 55 Copynumber: 2.1 Consensus size: 55
132828 GCGTTCAGAT
* * *
132838 GATTCATGAAGAAGAACATTCTACGAATGAAGAAATTTGAACCTGACTGAAGAAC
1 GATTCATGAAGAAGAACATCCGACGAATGAAGAAATTTGAAACTGACTGAAGAAC
* * * *
132893 GATTCATGAAGAAGGACATCCGATGAATGAAGAAATTTGAAACTGATTGAAGACC
1 GATTCATGAAGAAGAACATCCGACGAATGAAGAAATTTGAAACTGACTGAAGAAC
132948 GAT
1 GAT
132951 CCAAAAAGAA
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
55 51 1.00
ACGTcount: A:0.42, C:0.13, G:0.22, T:0.22
Consensus pattern (55 bp):
GATTCATGAAGAAGAACATCCGACGAATGAAGAAATTTGAAACTGACTGAAGAAC
Found at i:132960 original size:55 final size:55
Alignment explanation
Indices: 132862--132968 Score: 151
Period size: 55 Copynumber: 1.9 Consensus size: 55
132852 AACATTCTAC
* * ** *
132862 GAATGAAGAAATTTGAACCTGACTGAAGAACGATTCATGAAGAAGGACATCCGAT
1 GAATGAAGAAATTTGAAACTGACTGAAGAACGATCCAAAAAGAAAGACATCCGAT
* *
132917 GAATGAAGAAATTTGAAACTGATTGAAGACCGATCCAAAAAGAAAGACATCC
1 GAATGAAGAAATTTGAAACTGACTGAAGAACGATCCAAAAAGAAAGACATCC
132969 TAAAGATGTT
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
55 45 1.00
ACGTcount: A:0.45, C:0.15, G:0.21, T:0.19
Consensus pattern (55 bp):
GAATGAAGAAATTTGAAACTGACTGAAGAACGATCCAAAAAGAAAGACATCCGAT
Found at i:133747 original size:72 final size:72
Alignment explanation
Indices: 133630--133780 Score: 257
Period size: 72 Copynumber: 2.1 Consensus size: 72
133620 CCCCATTACA
* * * *
133630 CAAGAAAATATGATGACTTCGGGTGAGAATCTGAATGTTAGTGGTGCAACCAATGTGATGATAGC
1 CAAGAACAGATGAAGACTTCGAGTGAGAATCTGAATGTTAGTGGTGCAACCAATGTGATGATAGC
133695 AAATGAT
66 AAATGAT
133702 CAAGAACAGATGAAGACTTCGAGTGAGAATCTGAATGTTAGTGGTGCAACCAATGTGATGATAGC
1 CAAGAACAGATGAAGACTTCGAGTGAGAATCTGAATGTTAGTGGTGCAACCAATGTGATGATAGC
*
133767 AACTGAT
66 AAATGAT
133774 CAAGAAC
1 CAAGAAC
133781 CTGTTAGGGG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
72 74 1.00
ACGTcount: A:0.37, C:0.13, G:0.26, T:0.24
Consensus pattern (72 bp):
CAAGAACAGATGAAGACTTCGAGTGAGAATCTGAATGTTAGTGGTGCAACCAATGTGATGATAGC
AAATGAT
Found at i:138749 original size:55 final size:54
Alignment explanation
Indices: 138622--138981 Score: 444
Period size: 55 Copynumber: 6.6 Consensus size: 54
138612 TTTAGTCCTG
* *
138622 TACTCTCTGAAGGAATAGAGG-GCGGACCCGTTTTATGAAGATT-TTCGAGTTCTA
1 TACTCCCTGAAAGAATAG-GGAGCGGACCCGTTTT-TGAAGATTGTTCGAGTTCTA
*
138676 TACTCCCTGAACGAATAGGGAGCGGACCCGTTTGTTGAAGATTGTTCGAGTTCTA
1 TACTCCCTGAAAGAATAGGGAGCGGACCCGTTT-TTGAAGATTGTTCGAGTTCTA
*
138731 TACTCCCTGAACAG-ATAGGGAGCAGACCCGTTTGTTGAAGATTGTTCGAGTTCTA
1 TACTCCCTGAA-AGAATAGGGAGCGGACCCGTTT-TTGAAGATTGTTCGAGTTCTA
* * * * *
138786 TACTCTCTGAAGGAATAGAGAGCAGACCCGTTTTATAAAGATTGTTCGAGTTCTA
1 TACTCCCTGAAAGAATAGGGAGCGGACCCGTTTT-TGAAGATTGTTCGAGTTCTA
*
138841 TACTCCCTGAACAG-ATAGGGAACGGACCCGTTTATTGAAGATTGTTCGAG-TCTTA
1 TACTCCCTGAA-AGAATAGGGAGCGGACCCGTTT-TTGAAGATTGTTCGAGTTC-TA
* * * **
138896 TACTCCCTGAATGAATAGGGAGCAGACACGTTTACCGAAGATTGTTCGAG-TCTTA
1 TACTCCCTGAAAGAATAGGGAGCGGACCCGTTT-TTGAAGATTGTTCGAGTTC-TA
138951 TACTCCCTGAAAGAATAGGGAGCGGACCCGT
1 TACTCCCTGAAAGAATAGGGAGCGGACCCGT
138982 CATGTGAAGA
Statistics
Matches: 273, Mismatches: 23, Indels: 19
0.87 0.07 0.06
Matches are distributed among these distances:
53 2 0.01
54 41 0.15
55 227 0.83
56 3 0.01
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.28
Consensus pattern (54 bp):
TACTCCCTGAAAGAATAGGGAGCGGACCCGTTTTTGAAGATTGTTCGAGTTCTA
Found at i:138869 original size:165 final size:164
Alignment explanation
Indices: 138580--138981 Score: 532
Period size: 165 Copynumber: 2.5 Consensus size: 164
138570 GCCTTCATGG
* * * * *
138580 AAGAATAGTGAAGCAAACTCGTTTGTTGAAGA-T-TT--AGTCCTGTACTCTCTGAAGGAATAGA
1 AAGAATAG-GGAGCAGACACGTTTGTTGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGA
* * *
138641 GGGCGGACCCGTTTTATGAAGATTTTCGAGTTCTATACTCCCTGAACGAATAGGGAGCGGACCCG
65 GAGCGGACCCGTTTTATAAAGATTTTCGAGTTCTATACTCCCTGAACGAATAGGGAACGGACCCG
*
138706 TTTGTTGAAGATTGTTCGAGT-TCTATACTCCCTGA
130 TTTATTGAAGATTGTTCGAGTCT-TATACTCCCTGA
*
138741 ACAG-ATAGGGAGCAGACCCGTTTGTTGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGA
1 A-AGAATAGGGAGCAGACACGTTTGTTGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGA
*
138805 GAGCAGACCCGTTTTATAAAGATTGTTCGAGTTCTATACTCCCTGAAC-AGATAGGGAACGGACC
65 GAGCGGACCCGTTTTATAAAGATT-TTCGAGTTCTATACTCCCTGAACGA-ATAGGGAACGGACC
138869 CGTTTATTGAAGATTGTTCGAGTCTTATACTCCCTGA
128 CGTTTATTGAAGATTGTTCGAGTCTTATACTCCCTGA
* *** * * *
138906 ATGAATAGGGAGCAGACACGTTTACCGAAGATTGTTCGAG-TCTTATACTCCCTGAAAGAATAGG
1 AAGAATAGGGAGCAGACACGTTTGTTGAAGATTGTTCGAGTTC-TATACTCTCTGAAGGAATAGA
138970 GAGCGGACCCGT
65 GAGCGGACCCGT
138982 CATGTGAAGA
Statistics
Matches: 212, Mismatches: 19, Indels: 16
0.86 0.08 0.06
Matches are distributed among these distances:
160 20 0.09
161 6 0.03
162 4 0.02
164 49 0.23
165 132 0.62
166 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.29
Consensus pattern (164 bp):
AAGAATAGGGAGCAGACACGTTTGTTGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAG
AGCGGACCCGTTTTATAAAGATTTTCGAGTTCTATACTCCCTGAACGAATAGGGAACGGACCCGT
TTATTGAAGATTGTTCGAGTCTTATACTCCCTGA
Found at i:139186 original size:15 final size:16
Alignment explanation
Indices: 139160--139189 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
139150 GCTAAGTCAG
139160 AGCAGACCCGAAGCAA
1 AGCAGACCCGAAGCAA
139176 AGCAG-CCCGAAGCA
1 AGCAGACCCGAAGCA
139190 GAACAGTTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.40, C:0.33, G:0.27, T:0.00
Consensus pattern (16 bp):
AGCAGACCCGAAGCAA
Found at i:142507 original size:22 final size:22
Alignment explanation
Indices: 142467--142529 Score: 65
Period size: 23 Copynumber: 2.8 Consensus size: 22
142457 TTATTTTAGT
142467 TTTTTTATTTAATAATAAAAATA
1 TTTTTTATTTAATAAT-AAAATA
** *
142490 TTTTTTATTT-ATTTTAAATTA
1 TTTTTTATTTAATAATAAAATA
*
142511 TTTTTATATTAAATAATAA
1 TTTTT-TATTTAATAATAA
142530 GAAGAAAAAT
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
21 10 0.31
22 7 0.22
23 15 0.47
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (22 bp):
TTTTTTATTTAATAATAAAATA
Found at i:142763 original size:12 final size:12
Alignment explanation
Indices: 142746--142770 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
142736 TGATGTTGCA
142746 TAGTCGTGGTCG
1 TAGTCGTGGTCG
142758 TAGTCGTGGTCG
1 TAGTCGTGGTCG
142770 T
1 T
142771 GGTAATACGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.16, G:0.40, T:0.36
Consensus pattern (12 bp):
TAGTCGTGGTCG
Found at i:142896 original size:21 final size:21
Alignment explanation
Indices: 142870--143046 Score: 159
Period size: 21 Copynumber: 8.4 Consensus size: 21
142860 ATTTTGGACT
142870 ATCGCAACGAATTTGGAATAA
1 ATCGCAACGAATTTGGAATAA
* *
142891 ATCGCAACACGAACTTGGACT--
1 ATCGC-A-ACGAATTTGGAATAA
*
142912 ATCGCAACGAACTTGGAATAA
1 ATCGCAACGAATTTGGAATAA
* *
142933 ATCGTAACGCGAATTTGGACT--
1 ATCGCAA--CGAATTTGGAATAA
* *
142954 ATTGCAACGAATTTGTAATAA
1 ATCGCAACGAATTTGGAATAA
* * *
142975 ATCGCAACGCGAACTTCGACT--
1 ATCGCAA--CGAATTTGGAATAA
142996 ATCGCAACGAATTTGGAATAA
1 ATCGCAACGAATTTGGAATAA
143017 ATCGCAACGAATTTGGAATAA
1 ATCGCAACGAATTTGGAATAA
*
143038 ATAGCAACG
1 ATCGCAACG
143047 CGAACTTCGA
Statistics
Matches: 125, Mismatches: 19, Indels: 24
0.74 0.11 0.14
Matches are distributed among these distances:
19 31 0.25
20 1 0.01
21 63 0.50
22 1 0.01
23 29 0.23
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.23
Consensus pattern (21 bp):
ATCGCAACGAATTTGGAATAA
Found at i:142922 original size:42 final size:42
Alignment explanation
Indices: 142863--143025 Score: 263
Period size: 42 Copynumber: 3.9 Consensus size: 42
142853 CGTTGCGATT
*
142863 TTGGACTATCGCAACGAATTTGGAATAAATCGCAACACGAAC
1 TTGGACTATCGCAACGAATTTGGAATAAATCGCAACGCGAAC
* * *
142905 TTGGACTATCGCAACGAACTTGGAATAAATCGTAACGCGAAT
1 TTGGACTATCGCAACGAATTTGGAATAAATCGCAACGCGAAC
* *
142947 TTGGACTATTGCAACGAATTTGTAATAAATCGCAACGCGAAC
1 TTGGACTATCGCAACGAATTTGGAATAAATCGCAACGCGAAC
*
142989 TTCGACTATCGCAACGAATTTGGAATAAATCGCAACG
1 TTGGACTATCGCAACGAATTTGGAATAAATCGCAACG
143026 AATTTGGAAT
Statistics
Matches: 109, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 109 1.00
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.24
Consensus pattern (42 bp):
TTGGACTATCGCAACGAATTTGGAATAAATCGCAACGCGAAC
Found at i:143025 original size:63 final size:63
Alignment explanation
Indices: 142866--143062 Score: 217
Period size: 63 Copynumber: 3.1 Consensus size: 63
142856 TGCGATTTTG
* * *
142866 GACTATCGCAACGAATTTGGAATAAATCGCAACACGAACTTGGACT--ATCGCAA--CGAACTTG
1 GACTATCGCAACGAATTTGGAATAAATCGC-A-ACGAATTTGGAATAAATCGCAACGCGAACTTC
* * * * *
142927 GAATAAATCGTAACGCGAATTTGGACT--ATTGCAACGAATTTGTAATAAATCGCAACGCGAACT
1 GACT--ATCGCAA--CGAATTTGGAATAAATCGCAACGAATTTGGAATAAATCGCAACGCGAACT
142990 TC
62 TC
*
142992 GACTATCGCAACGAATTTGGAATAAATCGCAACGAATTTGGAATAAATAGCAACGCGAACTTC
1 GACTATCGCAACGAATTTGGAATAAATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
143055 GACTATCG
1 GACTATCG
143063 TAAATCAGTT
Statistics
Matches: 112, Mismatches: 14, Indels: 18
0.78 0.10 0.12
Matches are distributed among these distances:
61 24 0.21
62 1 0.01
63 66 0.59
65 21 0.19
ACGTcount: A:0.37, C:0.20, G:0.19, T:0.23
Consensus pattern (63 bp):
GACTATCGCAACGAATTTGGAATAAATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
Found at i:148182 original size:13 final size:12
Alignment explanation
Indices: 148161--148191 Score: 53
Period size: 13 Copynumber: 2.5 Consensus size: 12
148151 TTTACATCAG
148161 ATTTTTTATTTT
1 ATTTTTTATTTT
148173 ATTTTATTATTTT
1 ATTTT-TTATTTT
148186 ATTTTT
1 ATTTTT
148192 CAATAAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 6 0.33
13 12 0.67
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (12 bp):
ATTTTTTATTTT
Found at i:150984 original size:12 final size:12
Alignment explanation
Indices: 150967--150991 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
150957 CCTTCAAAAC
150967 TTCTTTTAATGA
1 TTCTTTTAATGA
150979 TTCTTTTAATGA
1 TTCTTTTAATGA
150991 T
1 T
150992 ACAACCCCTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.08, G:0.08, T:0.60
Consensus pattern (12 bp):
TTCTTTTAATGA
Found at i:151234 original size:21 final size:21
Alignment explanation
Indices: 151203--151263 Score: 113
Period size: 21 Copynumber: 2.9 Consensus size: 21
151193 GCATAAAGTC
151203 GGATAAAAAATCGATCCGGATT
1 GGAT-AAAAATCGATCCGGATT
151225 GGATAAAAATCGATCCGGATT
1 GGATAAAAATCGATCCGGATT
151246 GGATAAAAATCGATCCGG
1 GGATAAAAATCGATCCGG
151264 TTTTTTCACA
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
21 35 0.90
22 4 0.10
ACGTcount: A:0.39, C:0.15, G:0.25, T:0.21
Consensus pattern (21 bp):
GGATAAAAATCGATCCGGATT
Found at i:151874 original size:24 final size:24
Alignment explanation
Indices: 151842--151898 Score: 105
Period size: 24 Copynumber: 2.3 Consensus size: 24
151832 GAAGCTCGAC
151842 TACCATGTTGTCCAATAGAACACT
1 TACCATGTTGTCCAATAGAACACT
151866 TACCATGTTGTCCAATAGAACACT
1 TACCATGTTGTCCAATAGAACACT
151890 TACCCATGT
1 TA-CCATGT
151899 AAAATCAGAG
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
24 26 0.81
25 6 0.19
ACGTcount: A:0.32, C:0.26, G:0.12, T:0.30
Consensus pattern (24 bp):
TACCATGTTGTCCAATAGAACACT
Found at i:152732 original size:20 final size:20
Alignment explanation
Indices: 152709--152760 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
152699 AACGCGATCC
152709 CCAGAATCGCAAATCAGTTT
1 CCAGAATCGCAAATCAGTTT
152729 CCAGAATCGCAAATCAGTTT
1 CCAGAATCGCAAATCAGTTT
*
152749 CCAAAATCGCAA
1 CCAGAATCGCAA
152761 CGCGATTCTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.38, C:0.27, G:0.13, T:0.21
Consensus pattern (20 bp):
CCAGAATCGCAAATCAGTTT
Found at i:152777 original size:21 final size:20
Alignment explanation
Indices: 152750--152848 Score: 72
Period size: 21 Copynumber: 4.8 Consensus size: 20
152740 AATCAGTTTC
152750 CAAAATCGCAACGCGATTCTT
1 CAAAATCGCAACGCGATT-TT
* * * * *
152771 GAAAATCGCGATGCGATAGTA
1 CAAAATCGCAACGCGAT-TTT
* **
152792 CAAATTCGCATTGCGATTTT
1 CAAAATCGCAACGCGATTTT
* *
152812 CCAAAATCGCAACGCGAATAT
1 -CAAAATCGCAACGCGATTTT
*
152833 GAAAATCGCAACGCGA
1 CAAAATCGCAACGCGA
152849 ACACATAAAT
Statistics
Matches: 59, Mismatches: 17, Indels: 5
0.73 0.21 0.06
Matches are distributed among these distances:
20 16 0.27
21 43 0.73
ACGTcount: A:0.36, C:0.23, G:0.19, T:0.21
Consensus pattern (20 bp):
CAAAATCGCAACGCGATTTT
Found at i:152877 original size:20 final size:20
Alignment explanation
Indices: 152815--153008 Score: 221
Period size: 20 Copynumber: 9.7 Consensus size: 20
152805 CGATTTTCCA
* ** *
152815 AAATCGCAACGCGAATATGA
1 AAATCGCAACGCGTATCCGT
* *
152835 AAATCGCAACGCG-AACACAT
1 AAATCGCAACGCGTATC-CGT
152855 AAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
152875 AAATCGCAACGTGTATCCGT
1 AAATCGCAACGCGTATCCGT
**
152895 AAATCGCAACGCGTATGGGT
1 AAATCGCAACGCGTATCCGT
*
152915 AAATCGCAATGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
152935 ATATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
* * *
152955 AAATCGCAACG-ATAATACAT
1 AAATCGCAACGCGT-ATCCGT
152975 AAAATCGCAACGCGTATCCGT
1 -AAATCGCAACGCGTATCCGT
152996 AAATCGCAACGCG
1 AAATCGCAACGCG
153009 ATATTTAAAG
Statistics
Matches: 146, Mismatches: 23, Indels: 10
0.82 0.13 0.06
Matches are distributed among these distances:
19 2 0.01
20 126 0.86
21 17 0.12
22 1 0.01
ACGTcount: A:0.36, C:0.26, G:0.20, T:0.19
Consensus pattern (20 bp):
AAATCGCAACGCGTATCCGT
Found at i:152899 original size:60 final size:60
Alignment explanation
Indices: 152815--153008 Score: 253
Period size: 60 Copynumber: 3.2 Consensus size: 60
152805 CGATTTTCCA
* ** * *
152815 AAATCGCAACGCGAATATGAAAATCGCAACGCGAACACATAAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGTAAATCGCAACGCGAATACATAAATCGCAACGCGTATCCGT
* * *** *
152875 AAATCGCAACGTGTATCCGTAAATCGCAACGCGTATGGGTAAATCGCAATGCGTATCCGT
1 AAATCGCAACGCGTATCCGTAAATCGCAACGCGAATACATAAATCGCAACGCGTATCCGT
* **
152935 ATATCGCAACGCGTATCCGTAAATCGCAACGATAATACATAAAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGTAAATCGCAACGCGAATACAT-AAATCGCAACGCGTATCCGT
152996 AAATCGCAACGCG
1 AAATCGCAACGCG
153009 ATATTTAAAG
Statistics
Matches: 112, Mismatches: 21, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
60 81 0.72
61 31 0.28
ACGTcount: A:0.36, C:0.26, G:0.20, T:0.19
Consensus pattern (60 bp):
AAATCGCAACGCGTATCCGTAAATCGCAACGCGAATACATAAATCGCAACGCGTATCCGT
Found at i:153429 original size:33 final size:33
Alignment explanation
Indices: 153390--153460 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
153380 TTCACTTAGA
*
153390 TTTCATTTCGCGTTACGATTCTGTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
* *
153423 TTTCATTTCGCGTTGCTATTCTCTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
153456 TTTCA
1 TTTCA
153461 AGTTAGTATT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.11, C:0.23, G:0.18, T:0.48
Consensus pattern (33 bp):
TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
Found at i:153600 original size:14 final size:14
Alignment explanation
Indices: 153581--153635 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 14
153571 AGAATGACTG
153581 TCGCAACGAGAGAA
1 TCGCAACGAGAGAA
*
153595 TCGCAACGCGAAATGGAAA
1 TCGCAA--CGAGA--G-AA
153614 TCGCAACGAGAGAA
1 TCGCAACGAGAGAA
153628 TCGCAACG
1 TCGCAACG
153636 CGAAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
14 16 0.47
15 1 0.03
16 4 0.12
17 4 0.12
18 1 0.03
19 8 0.24
ACGTcount: A:0.40, C:0.24, G:0.27, T:0.09
Consensus pattern (14 bp):
TCGCAACGAGAGAA
Found at i:153648 original size:33 final size:33
Alignment explanation
Indices: 153581--153651 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
153571 AGAATGACTG
***
153581 TCGCAACGAGAGAATCGCAACGCGAAATGGAAA
1 TCGCAACGAGAGAATCGCAACGCGAAACCAAAA
153614 TCGCAACGAGAGAATCGCAACGCGAAACCAAAA
1 TCGCAACGAGAGAATCGCAACGCGAAACCAAAA
153647 TCGCA
1 TCGCA
153652 TTGCGATTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.42, C:0.25, G:0.24, T:0.08
Consensus pattern (33 bp):
TCGCAACGAGAGAATCGCAACGCGAAACCAAAA
Found at i:153669 original size:19 final size:19
Alignment explanation
Indices: 153647--153744 Score: 81
Period size: 19 Copynumber: 5.7 Consensus size: 19
153637 GAAACCAAAA
*
153647 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
153666 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
*
153680 TCTCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
153699 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* * *
153713 TCTCGTTGCGATTGTCATC
1 TCGCGTTGCGATTTTCATT
153732 TCGCGTTGCGATT
1 TCGCGTTGCGATT
153745 CTCTCGTTGC
Statistics
Matches: 63, Mismatches: 6, Indels: 20
0.71 0.07 0.22
Matches are distributed among these distances:
14 20 0.32
16 5 0.08
17 6 0.10
19 32 0.51
ACGTcount: A:0.10, C:0.24, G:0.22, T:0.43
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:153688 original size:14 final size:14
Alignment explanation
Indices: 153669--153758 Score: 81
Period size: 14 Copynumber: 5.7 Consensus size: 14
153659 TTTCATTTCG
153669 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
153683 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
153702 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
153716 CGTTGCGATTGTCATCT
1 CGTTGCGA-T-TC-TCT
153733 CGCGTTGCGATTCTCT
1 --CGTTGCGATTCTCT
153749 CGTTGCGATT
1 CGTTGCGATT
153759 TTCATTTCAA
Statistics
Matches: 64, Mismatches: 2, Indels: 20
0.74 0.02 0.23
Matches are distributed among these distances:
14 28 0.44
15 1 0.02
16 8 0.12
17 8 0.12
18 1 0.02
19 18 0.28
ACGTcount: A:0.09, C:0.26, G:0.23, T:0.42
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:153694 original size:33 final size:33
Alignment explanation
Indices: 153652--153766 Score: 212
Period size: 33 Copynumber: 3.5 Consensus size: 33
153642 CAAAATCGCA
153652 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
153685 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
* *
153718 TTGCGATTGTCATCTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
153751 TTGCGATTTTCATTTC
1 TTGCGATTTTCATTTC
153767 AACCAAAAGA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 78 1.00
ACGTcount: A:0.10, C:0.24, G:0.21, T:0.45
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
Found at i:155692 original size:185 final size:186
Alignment explanation
Indices: 155462--155843 Score: 748
Period size: 185 Copynumber: 2.1 Consensus size: 186
155452 TAGATTGCTT
155462 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
155527 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
155592 GTGTATTCTTTAACACTGTGAAATA-TATTTGTCTTTGTTTTGTCTTTTGGTTGAA
131 GTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTTTTGTCTTTTGGTTGAA
*
155647 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
155712 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
155777 GTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTTTTGTCTTTTGGTTGAA
131 GTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTTTTGTCTTTTGGTTGAA
155833 AGTAAATTTAT
1 AGTAAATTTAT
155844 CCATTCAAGT
Statistics
Matches: 194, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
185 154 0.79
186 40 0.21
ACGTcount: A:0.23, C:0.13, G:0.19, T:0.46
Consensus pattern (186 bp):
AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
GTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTTTTGTCTTTTGGTTGAA
Found at i:155776 original size:93 final size:93
Alignment explanation
Indices: 155462--155841 Score: 744
Period size: 93 Copynumber: 4.1 Consensus size: 93
155452 TAGATTGCTT
*
155462 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
155527 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
155555 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATA-TA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
155619 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
155647 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
155712 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
155740 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
155805 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
155833 AGTAAATTT
1 AGTAAATTT
155842 ATCCATTCAA
Statistics
Matches: 285, Mismatches: 1, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
92 92 0.32
93 193 0.68
ACGTcount: A:0.22, C:0.13, G:0.19, T:0.46
Consensus pattern (93 bp):
AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
TTTGTCTTTGTTTTGTCTTTTGGTTGAA
Done.