Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000734.1 Hibiscus syriacus cultivar Beakdansim tig00001424_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86144

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5556--6231
165
4.1
166
91
1
941
23
20
25
30
1.99
5545--6246
84
8.5
84
78
6
766
23
20
25
30
1.99
10047--10081
6
5.8
6
86
0
52
48
2
2
45
1.32
10121--10162
21
2.0
21
82
13
52
69
0
4
26
1.08
11522--12246
84
8.7
84
77
6
715
23
20
24
30
1.99
11533--12203
165
4.0
165
90
1
898
23
21
25
29
1.99
11520--12113
249
2.4
249
82
5
678
24
21
24
29
1.99
15970--16010
6
6.8
6
88
0
64
48
2
2
46
1.28
16050--16091
21
2.0
21
82
13
52
69
0
4
26
1.08
17186--17240
23
2.5
22
81
18
69
70
0
1
27
0.97
17942--18124
39
4.7
39
90
0
285
49
11
14
24
1.76
17942--18124
78
2.3
78
94
1
314
49
11
14
24
1.76
19244--19366
58
2.1
58
82
10
144
34
12
16
36
1.86
19596--19636
19
2.2
19
86
8
57
36
7
0
56
1.27
19476--19714
122
2.0
120
78
8
252
33
11
5
48
1.62
27097--27232
68
2.0
69
90
7
215
36
11
19
33
1.87
30287--30325
17
2.4
17
95
4
71
43
0
5
51
1.24
35145--35195
3
17.3
3
95
4
95
66
0
0
33
0.92
43905--43933
14
2.0
15
93
6
51
27
3
62
6
1.37
48667--48813
60
2.4
60
81
3
179
29
26
3
40
1.72
48965--49112
60
2.5
60
74
10
142
41
6
18
33
1.75
53271--53317
21
2.2
22
84
3
60
12
17
36
34
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56428--56504
31
2.5
31
80
2
91
27
31
27
14
1.95
56381--56504
63
2.0
63
82
6
153
25
29
28
16
1.97
57374--57404
7
4.4
7
91
0
53
29
29
25
16
1.96
57395--57436
22
1.9
22
100
0
84
9
23
47
19
1.78
57433--57531
9
10.3
9
77
10
90
29
28
27
15
1.96
57435--57532
19
5.1
19
80
13
101
29
28
25
16
1.97
57458--57532
29
2.5
31
91
8
129
29
28
26
16
1.96
63243--63319
31
2.5
31
80
2
91
27
31
27
14
1.95
63196--63319
63
2.0
63
82
6
153
25
29
28
16
1.97
64190--64227
7
5.4
7
100
0
76
26
28
28
15
1.96
64224--64276
22
2.4
22
96
0
97
7
20
50
20
1.72
64217--64277
17
3.3
17
75
20
68
11
21
47
19
1.81
64273--64344
29
2.4
31
88
9
114
27
26
29
16
1.97
64273--64343
10
7.3
9
77
12
61
28
26
29
15
1.96
64306--64344
21
1.9
21
94
5
71
33
25
25
15
1.95
65681--65717
2
18.5
2
100
0
74
48
0
0
51
1.00
65862--66052
51
3.7
51
81
4
197
26
12
14
46
1.81
65862--66040
52
3.5
50
81
8
200
26
13
15
44
1.84
74137--74166
14
2.1
14
93
0
51
56
6
6
30
1.51
76199--76269
31
2.3
31
92
0
115
49
2
12
35
1.56
78111--78203
29
3.1
29
66
11
71
33
19
3
44
1.67
78111--78271
60
2.7
60
80
6
175
33
22
4
39
1.74

Tables:   1

The End!