genome.fa.s7340.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007340.1 Hibiscus syriacus cultivar Beakdansim tig00019666_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  137242

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2785--2852	20	3.3	20	72	10	50	64	5	2	26	1.30
4084--4121	3	12.7	3	89	10	60	65	0	0	34	0.93
4669--4709	6	6.8	6	91	0	55	51	0	0	48	1.00
10175--10208	18	1.9	18	88	5	52	41	2	0	55	1.15
11652--11688	19	1.9	19	88	0	56	56	0	8	35	1.29
13623--13708	30	2.9	29	79	17	113	24	25	10	39	1.87
16002--16077	39	1.9	39	86	0	107	30	21	28	19	1.97
16002--16158	85	1.8	85	81	5	192	31	22	28	17	1.97
37105--37135	6	5.2	6	100	0	62	51	32	0	16	1.44
37104--37144	18	2.3	18	82	0	55	51	26	7	14	1.69
39618--39665	18	2.8	17	84	12	62	47	0	45	6	1.27
41034--41091	25	2.3	25	93	3	98	18	5	20	55	1.62
47009--47120	59	1.9	59	92	0	188	36	14	15	33	1.87
48621--48848	103	2.2	103	98	0	438	30	10	17	42	1.82
54439--54478	21	1.9	21	85	10	55	40	5	15	40	1.68
55542--55668	59	2.2	60	81	5	154	49	13	15	21	1.78
59950--59989	15	2.5	17	80	15	50	35	0	7	57	1.27
60236--60292	23	2.5	22	80	8	69	35	26	19	19	1.95
71456--71504	19	2.7	17	84	9	53	26	20	28	24	1.99
71485--71594	58	1.9	56	83	7	141	26	20	23	30	1.98
72718--72761	21	2.1	21	82	0	52	31	15	43	9	1.79
80413--80447	18	1.9	18	88	0	52	31	0	17	51	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85930--85970	18	2.3	18	100	0	82	19	17	17	46	1.85
87177--87260	39	2.2	39	80	8	91	39	2	42	15	1.60
99087--99135	26	2.0	25	88	8	73	32	6	14	46	1.69
104179--104219	18	2.3	18	91	8	66	58	0	0	41	0.98
104694--104744	23	2.1	23	82	7	57	50	0	15	33	1.44
106966--107010	18	2.6	17	82	6	54	33	0	4	62	1.15
107573--107704	59	2.2	60	84	9	164	34	16	16	31	1.92
111863--111921	31	1.9	31	85	0	82	27	8	15	49	1.73
115047--115120	37	2.0	38	86	2	105	17	14	14	52	1.75
115264--115325	23	2.7	23	90	5	90	14	4	12	67	1.38
115286--115337	23	2.3	23	89	0	77	17	3	13	65	1.41
116067--116139	38	1.9	38	85	0	101	39	12	19	28	1.88
118056--118108	23	2.3	23	77	3	54	58	3	1	35	1.27
130767--130801	18	1.9	18	88	0	52	45	11	5	37	1.64
136266--136309	23	1.9	23	86	9	63	63	2	0	34	1.07

Tables:   1

The End!