genome.fa.s7341.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007341.1 Hibiscus syriacus cultivar Beakdansim tig00019669_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99154

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
182--271	23	4.2	22	72	16	73	30	20	23	26	1.98
5862--6015	65	2.4	65	85	4	204	30	17	22	29	1.96
6986--7031	22	2.1	22	91	0	74	32	23	19	23	1.97
8457--8504	21	2.5	19	86	10	62	27	12	14	45	1.81
9001--9054	20	2.7	20	94	2	90	33	42	11	12	1.79
15100--15148	16	3.1	16	100	0	98	24	42	6	26	1.78
14666--15563	470	1.9	466	89	1	1386	32	22	16	28	1.96
20097--20139	14	3.0	15	84	15	56	60	0	0	39	0.97
20751--20833	20	4.2	20	85	0	103	38	21	16	22	1.93
20805--21429	249	2.5	249	91	1	979	36	16	16	30	1.91
22769--22847	40	1.9	42	89	5	126	26	24	15	34	1.94
35534--35732	99	2.0	99	98	0	380	33	22	9	35	1.85
36182--36297	56	2.1	57	93	1	198	58	5	3	32	1.37
38239--38287	10	5.3	10	78	14	52	59	0	0	40	0.98
38237--38289	12	4.2	13	86	11	74	58	0	0	41	0.98
38241--38289	26	2.0	24	88	8	71	59	0	0	40	0.98
48242--49224	81	12.1	80	89	1	1363	31	22	11	34	1.90
54997--55061	29	2.2	29	97	0	121	35	27	26	10	1.90
59378--60258	55	16.1	55	90	0	1291	34	12	18	34	1.88
60461--60598	47	2.9	49	80	3	172	28	13	26	31	1.94
67584--67627	22	2.1	21	88	12	65	36	15	20	27	1.93
68054--69299	55	22.4	55	77	7	1115	36	10	18	34	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70397--70438	13	3.2	13	82	0	57	28	21	16	33	1.95
73300--73400	53	1.9	53	89	4	159	26	26	14	31	1.95
78455--78618	87	1.9	88	90	1	267	41	23	12	22	1.87
83955--83989	3	11.7	3	100	0	70	0	0	31	68	0.90
92608--92875	79	3.4	78	84	3	340	38	17	20	24	1.93
94223--94721	95	5.3	96	81	6	276	41	12	21	23	1.88
94373--94721	95	3.7	95	91	0	563	41	13	22	23	1.88
94371--94718	46	7.4	46	65	18	160	40	13	22	23	1.89
94414--94672	49	5.4	48	65	14	142	42	13	20	23	1.88
94837--94933	36	2.7	36	88	0	140	39	15	22	22	1.92

Tables:   1

The End!