genome.fa.s7342.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007342.1 Hibiscus syriacus cultivar Beakdansim tig00019671_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77865

Tables:   1   

This is table  1  of  1  ( 83 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5370--5394	2	12.5	2	100	0	50	48	0	0	52	1.00
6700--6787	12	7.2	12	75	14	72	29	4	1	64	1.20
6722--6787	3	22.3	3	76	14	66	28	3	0	68	1.05
6722--6789	36	1.9	34	91	5	109	29	2	0	67	1.05
6788--6828	19	2.2	18	86	8	55	60	0	0	39	0.96
7598--7637	16	2.5	15	88	11	62	25	2	0	72	0.97
9939--9981	14	3.2	13	87	9	59	18	13	6	60	1.55
9949--9981	7	4.9	7	85	7	50	15	15	9	60	1.58
12181--12206	2	13.0	2	100	0	52	50	0	0	50	1.00
14441--14664	114	2.0	114	93	0	385	34	16	18	29	1.94
17094--17148	22	2.5	22	93	0	101	34	10	14	40	1.81
17660--17992	166	2.0	168	91	2	546	35	13	12	38	1.83
17995--18862	76	11.4	76	96	0	1583	23	19	22	34	1.96
19013--19059	2	23.5	2	100	0	94	48	0	0	51	1.00
22109--22181	37	2.0	37	100	0	146	64	0	5	30	1.16
22458--22797	86	4.0	85	80	4	324	22	17	23	36	1.94
22590--22796	42	4.9	42	83	2	234	19	19	23	37	1.94
22546--22796	128	2.0	128	82	3	308	20	19	23	37	1.95
22424--22797	43	8.7	43	82	4	281	22	16	23	37	1.94
23195--23242	21	2.3	19	77	19	51	6	29	18	45	1.74
23208--23281	21	3.5	21	81	0	85	4	33	17	44	1.68
23230--23311	21	4.0	20	77	6	65	3	36	17	42	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31533--31625	41	2.3	41	84	3	116	38	22	16	22	1.92
31562--31677	41	2.8	41	85	6	137	37	22	15	25	1.93
31562--31693	41	3.2	41	82	7	135	34	21	16	28	1.95
32159--32188	15	2.0	15	93	0	51	56	13	0	30	1.37
33244--33422	41	4.4	40	79	8	173	33	18	14	33	1.91
33245--33396	82	1.9	81	83	4	198	32	19	13	34	1.91
33390--33527	42	3.3	40	68	16	95	28	16	17	36	1.92
33430--33570	42	3.4	40	73	14	117	26	19	18	36	1.94
33390--33584	82	2.3	82	83	8	243	28	18	18	33	1.95
33603--33667	29	2.3	27	80	17	78	16	13	16	52	1.75
37612--37724	20	5.7	20	92	0	172	38	18	20	22	1.93
37921--37986	22	3.0	22	88	0	96	24	39	16	19	1.92
38327--38392	20	3.3	20	87	2	98	12	15	21	51	1.75
38356--38399	20	2.2	20	91	0	70	11	13	20	54	1.69
40280--40476	20	10.5	20	76	14	170	42	20	17	18	1.89
40523--40629	20	5.3	21	89	4	143	20	16	21	41	1.91
42602--42637	14	2.6	14	90	0	54	30	0	22	47	1.52
42762--42813	14	3.4	14	72	23	50	44	19	25	11	1.84
42743--42838	33	2.8	33	92	3	147	43	19	23	12	1.85
42887--42980	20	4.7	20	84	12	122	21	21	23	34	1.97
42889--42980	40	2.3	40	92	3	150	21	20	22	34	1.96
42848--42981	60	2.4	54	80	12	153	19	21	21	37	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45170--45206	14	2.6	14	91	4	56	5	21	21	51	1.68
46289--46343	20	2.8	20	100	0	110	30	18	21	29	1.97
46343--46432	20	4.5	20	95	0	162	18	18	21	41	1.91
49326--49377	22	2.4	22	96	0	95	30	17	11	40	1.85
50306--50374	31	2.2	31	100	0	138	18	2	31	46	1.64
52530--52686	79	2.0	79	89	0	242	38	15	7	37	1.77
53277--53324	19	2.5	19	86	3	60	37	27	14	20	1.92
53418--53505	41	2.1	41	82	0	113	32	23	18	25	1.97
53665--53710	22	2.1	22	100	0	92	21	45	13	19	1.84
54081--54124	19	2.3	19	88	7	63	13	15	25	45	1.83
54129--54177	20	2.5	20	89	0	71	18	18	26	36	1.94
56099--56187	20	4.4	20	94	0	151	35	25	21	16	1.94
56179--56285	33	3.2	33	94	1	178	46	18	19	14	1.84
56192--56291	14	5.7	19	72	23	103	48	18	19	15	1.82
56286--56332	19	2.5	19	89	0	67	12	14	25	46	1.80
56292--56345	19	2.8	19	80	2	63	11	16	22	50	1.77
56369--56412	20	2.2	20	95	0	79	13	13	22	50	1.77
56910--57010	42	2.4	42	81	6	116	21	35	17	24	1.95
56888--56995	21	5.1	21	74	8	85	19	33	19	27	1.96
58392--58428	14	2.6	14	100	0	74	29	0	21	48	1.50
58548--58625	20	3.9	20	86	0	102	43	24	17	14	1.86
58664--58834	20	8.9	20	80	7	165	25	17	22	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58664--58834	40	4.4	40	78	8	192	25	17	22	34	1.96
58615--58834	94	2.4	94	85	3	275	25	18	21	35	1.96
58805--59087	140	2.0	140	97	0	539	43	15	12	28	1.83
59145--59187	12	3.6	12	87	0	59	16	4	25	53	1.62
59152--59185	6	5.7	6	85	0	50	17	2	20	58	1.51
61221--61257	14	2.6	14	91	4	56	5	21	21	51	1.68
61447--61500	24	2.2	24	93	0	90	44	20	14	20	1.86
61463--61514	24	2.2	24	85	0	68	38	21	17	23	1.93
62217--62326	20	5.5	20	93	0	184	25	19	30	25	1.98
62241--62350	40	2.6	45	90	7	140	26	19	30	24	1.98
62365--62412	19	2.5	19	89	3	69	20	14	29	35	1.93
65513--65608	44	2.2	44	82	0	111	33	12	17	36	1.88
65695--65743	23	2.1	23	88	0	71	22	24	20	32	1.98
70907--71002	44	2.2	44	84	3	122	32	14	19	33	1.92
71094--71188	23	4.1	23	75	2	84	20	21	22	36	1.95
71086--71182	46	2.1	46	86	3	133	20	23	19	36	1.95
72264--72327	23	2.8	23	85	0	101	35	25	25	14	1.93

Tables:   1

The End!