genome.fa.s7344.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007344.1 Hibiscus syriacus cultivar Beakdansim tig00019677_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97209

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1125--1175	2	25.5	2	88	7	77	45	3	0	50	1.20
1373--1402	6	4.8	6	92	8	51	30	3	0	66	1.07
2599--2653	28	2.0	28	82	7	67	32	20	21	25	1.97
2627--2715	43	2.1	43	86	0	124	26	17	20	34	1.95
7393--7913	46	11.5	46	89	2	777	23	23	9	43	1.82
7481--7913	20	19.0	25	71	21	266	24	23	8	43	1.81
7393--7904	178	2.8	182	89	4	759	23	23	9	43	1.82
7393--7913	224	2.3	226	90	3	807	23	23	9	43	1.82
8289--8498	95	2.2	95	85	3	271	24	26	14	34	1.94
14648--14686	20	2.0	20	84	0	51	23	28	7	41	1.82
14673--14875	26	8.5	26	69	19	174	23	21	10	44	1.83
14655--14755	45	2.2	46	94	1	177	22	22	9	44	1.82
14675--14829	71	2.2	72	90	1	258	24	20	9	45	1.81
14771--14845	20	3.5	20	72	19	69	22	25	9	42	1.83
14758--14890	46	2.9	46	92	2	214	24	21	11	43	1.84
19153--19211	16	3.7	16	88	0	91	57	18	11	11	1.64
19165--19215	26	2.0	26	84	7	68	58	15	11	13	1.63
19147--19212	16	4.1	16	86	0	87	56	16	12	15	1.68
19415--19454	12	3.4	12	89	6	64	22	25	20	32	1.98
19415--19462	23	2.1	23	88	0	69	25	22	22	29	1.99
20314--20391	24	3.2	24	85	7	104	57	20	10	11	1.62
20325--20396	24	3.0	25	87	8	112	56	23	11	8	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23797--23842	3	16.0	3	86	13	62	71	0	0	28	0.86
23797--23842	13	3.7	13	85	8	69	71	0	0	28	0.86
24132--24296	40	3.8	43	75	10	124	22	20	31	26	1.98
24632--24675	15	2.9	15	93	0	70	43	4	20	31	1.72
24664--24738	31	2.4	30	82	8	80	40	13	14	32	1.85
24828--24881	27	2.0	27	89	7	83	46	14	12	25	1.81
24832--24888	27	2.0	28	86	6	80	49	15	12	22	1.78
25150--25347	105	1.9	106	87	3	292	39	10	19	29	1.85
25314--25450	36	3.8	36	80	9	163	35	13	20	29	1.91
25314--25448	71	1.9	72	86	4	193	34	14	20	30	1.92
25804--25849	4	12.2	4	82	13	62	26	0	21	52	1.47
25806--25841	18	2.1	17	94	5	63	25	0	22	52	1.47
33076--33124	3	17.0	3	87	12	68	71	0	0	28	0.86
33076--33119	13	3.5	13	90	3	72	70	0	0	29	0.88
33068--33121	25	2.2	25	90	6	83	72	0	1	25	0.95
34752--34792	15	2.7	16	85	11	59	48	2	7	41	1.44
37152--37221	35	2.0	34	83	10	88	27	22	2	47	1.66
37928--38091	53	3.1	53	91	1	258	39	18	17	25	1.92
42593--42622	2	15.0	2	100	0	60	50	0	0	50	1.00
43902--44073	90	1.9	89	95	1	308	46	6	10	36	1.65
55843--55914	20	3.6	20	94	0	126	36	19	13	30	1.91
60178--60526	175	2.0	174	98	0	671	41	13	20	24	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63071--63152	3	27.0	3	75	7	67	62	0	0	37	0.96
63797--63847	22	2.3	22	100	0	102	11	27	11	49	1.74
63740--63825	39	2.2	39	95	0	154	16	23	11	48	1.78
72810--72841	15	2.1	15	100	0	64	50	6	18	25	1.70
76028--76086	25	2.4	25	80	5	66	71	1	1	25	1.05
78375--78461	3	29.0	3	76	4	77	60	1	0	37	1.04
81212--81251	9	4.3	9	84	6	53	15	30	27	27	1.96
81251--81283	17	1.9	17	100	0	66	21	42	24	12	1.86
81275--81305	7	4.6	7	92	8	55	16	32	29	22	1.95
81275--81305	13	2.3	14	94	5	55	16	32	29	22	1.95
88395--88433	17	2.3	17	95	0	69	17	43	23	15	1.87
88423--88460	7	5.6	7	87	6	60	18	31	26	23	1.97
88423--88460	13	2.8	14	88	8	60	18	31	26	23	1.97
88423--88460	20	1.9	20	94	0	67	18	31	26	23	1.97
90827--90859	15	2.1	16	88	5	50	54	0	0	45	0.99
90945--91008	28	2.2	29	86	2	85	50	1	3	45	1.27

Tables:   1

The End!