Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007348.1 Hibiscus syriacus cultivar Beakdansim tig00019690_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75440

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5761--5799
2
20.0
2
94
5
71
48
0
0
51
1.00
14645--14932
144
2.0
144
95
0
524
44
7
5
41
1.58
15122--15177
21
2.5
22
80
5
60
16
17
8
57
1.64
18165--18327
80
2.0
81
93
1
283
33
16
19
30
1.94
20264--20330
14
4.6
14
75
10
53
49
1
1
47
1.19
23922--24025
52
2.0
52
100
0
208
34
19
15
30
1.93
24225--24267
16
2.7
16
96
0
77
60
6
9
23
1.51
24359--24405
22
2.1
22
88
7
69
57
6
0
36
1.24
24358--24457
32
3.0
32
80
8
110
55
11
0
34
1.35
24391--24419
14
2.1
14
100
0
58
62
6
0
31
1.22
24405--24609
80
2.6
80
96
0
374
52
13
0
33
1.45
24467--24795
134
2.5
134
94
1
579
51
12
0
35
1.44
24547--24666
54
2.2
54
92
0
204
50
11
1
35
1.49
24652--24726
22
3.2
22
75
14
69
54
16
0
29
1.42
24681--24795
54
2.1
54
96
0
212
52
11
0
36
1.38
24730--24772
22
2.0
22
95
0
77
51
11
0
37
1.39
24775--24891
15
7.5
15
79
15
103
49
1
0
47
1.17
24775--24891
29
3.7
30
76
17
112
49
1
0
47
1.17
32323--32370
15
3.1
15
75
19
53
35
6
0
58
1.23
32323--32385
30
2.1
29
82
14
74
33
4
0
61
1.17
34324--34377
20
2.7
20
88
0
81
50
18
20
11
1.77
34412--34499
20
4.4
20
92
0
131
36
18
25
20
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34609--34754
6
24.5
6
99
0
285
32
50
16
0
1.45
35445--35476
6
5.5
6
96
3
57
0
15
53
31
1.43
35545--35588
20
2.2
20
91
0
70
11
18
15
54
1.70
35575--35872
20
14.6
20
75
7
125
18
23
19
38
1.93
35577--35747
40
4.2
40
77
4
171
20
26
16
36
1.94
35597--35768
63
2.8
63
83
2
215
20
26
16
36
1.94
35822--35872
19
2.6
20
90
3
77
15
17
23
43
1.88
36460--36495
18
1.9
19
88
5
56
47
0
0
52
1.00
41790--41822
16
2.1
16
94
0
57
24
9
18
48
1.76
42461--42505
19
2.4
19
88
7
65
37
0
4
57
1.19
42456--42506
19
2.5
22
72
24
56
37
0
3
58
1.16
42525--42558
2
17.0
2
100
0
68
50
0
0
50
1.00
46551--46580
15
2.0
15
100
0
60
40
13
20
26
1.89
58936--58964
2
14.5
2
100
0
58
48
0
0
51
1.00
59802--59844
18
2.2
20
84
8
54
37
20
0
41
1.53
61853--61901
25
2.0
25
87
0
71
40
2
16
40
1.60
61989--62042
27
2.0
26
85
7
72
50
1
1
46
1.23
65064--65109
17
2.6
17
83
10
58
39
4
0
56
1.19
65080--65123
22
2.0
23
86
4
63
38
4
0
56
1.20

Tables:   1

The End!