Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007349.1 Hibiscus syriacus cultivar Beakdansim tig00019691_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75873

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
439--508
4
17.0
4
85
5
95
48
22
1
27
1.59
1200--1258
28
2.0
31
90
9
97
44
6
20
28
1.77
21970--21997
2
14.0
2
100
0
56
50
0
0
50
1.00
22108--22172
34
1.9
34
93
0
112
60
0
15
24
1.36
25609--25660
24
2.2
24
85
0
68
15
9
13
61
1.56
29397--29471
39
2.0
39
84
10
102
53
9
9
28
1.64
29856--30048
93
2.1
93
96
0
350
40
18
12
27
1.87
36050--36143
5
18.8
5
97
0
107
51
20
9
19
1.74
43851--44041
67
2.9
64
73
16
167
22
10
1
65
1.29
43998--44022
4
6.2
4
100
0
50
24
0
0
76
0.80
44387--44499
51
2.2
51
85
1
154
34
5
10
49
1.60
47663--47714
17
3.2
17
75
10
54
50
13
3
32
1.60
48343--48393
19
2.6
20
90
3
77
43
23
17
15
1.88
48343--48660
20
15.6
20
80
4
188
39
18
22
19
1.93
48468--48658
40
4.7
40
84
3
238
36
17
24
21
1.94
48446--48658
83
2.6
83
87
2
288
36
17
24
21
1.94
48748--48993
6
40.5
6
95
3
440
33
49
16
1
1.54
49684--49757
6
12.5
6
98
1
141
0
16
51
32
1.45
49790--50029
20
11.4
20
87
5
255
20
25
17
36
1.94
49792--49990
63
3.2
63
88
6
287
20
26
17
36
1.94
49790--50030
83
2.9
83
88
5
326
20
25
17
36
1.94
49808--50008
103
2.0
103
94
0
357
21
25
17
35
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50043--50096
20
2.7
19
88
8
81
9
18
18
53
1.70
55566--55710
77
1.9
78
86
5
213
33
19
14
33
1.92
58960--59022
13
4.6
13
75
16
56
63
4
1
30
1.24
59031--59070
21
1.9
21
94
0
71
42
25
2
30
1.68
59507--59537
2
15.5
2
93
0
53
51
3
0
45
1.17
60693--60736
16
2.8
16
92
0
79
56
0
9
34
1.31
61856--61911
27
2.1
27
82
0
67
37
7
19
35
1.79
65557--65717
60
2.7
60
81
3
173
40
5
25
28
1.78
67695--67730
2
18.0
2
100
0
72
50
0
0
50
1.00
69023--69098
36
2.1
36
97
0
143
40
19
0
39
1.52
73896--73961
12
5.5
12
88
0
105
24
24
27
24
2.00
73894--73961
24
2.8
24
95
0
127
23
23
29
23
1.99
74991--75062
2
39.0
2
76
15
75
44
0
0
55
0.99
74990--75072
6
13.3
6
73
16
53
42
0
0
57
0.98
75028--75092
28
2.3
28
87
7
96
40
0
0
60
0.97
75026--75089
19
3.4
19
77
10
69
39
0
0
60
0.97
75011--75093
37
2.2
36
85
10
114
42
0
0
57
0.98

Tables:   1

The End!