Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000735.1 Hibiscus syriacus cultivar Beakdansim tig00001425_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60423

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
652--710
29
2.0
29
100
0
118
49
13
13
23
1.78
3675--3705
16
1.9
16
100
0
62
45
29
19
6
1.75
10015--10278
142
1.9
143
91
0
440
48
7
7
36
1.60
10837--10870
16
2.1
17
94
5
61
32
0
0
67
0.91
17007--17067
21
2.8
22
82
7
70
24
34
24
16
1.95
18964--19037
23
3.2
23
77
17
64
16
1
27
55
1.49
23517--23549
17
1.9
17
93
0
57
66
3
9
21
1.33
24783--24855
2
36.5
2
100
0
146
50
0
0
49
1.00
31385--31497
29
3.9
29
96
2
201
18
38
26
15
1.91
31494--31573
40
2.0
40
100
0
160
10
17
37
35
1.83
31550--31606
13
4.1
13
83
16
78
0
22
47
29
1.52
31546--31603
30
1.9
30
100
0
116
0
22
48
29
1.51
31872--31896
12
2.1
12
100
0
50
16
0
60
24
1.36
31933--32000
35
1.9
35
93
0
118
27
30
16
25
1.96
32437--32480
21
2.1
21
86
0
61
29
0
18
52
1.46
32501--32532
8
4.0
8
100
0
64
37
0
12
50
1.41
32988--33035
18
2.6
19
81
15
64
37
0
12
50
1.41
32986--33048
18
3.4
18
73
4
63
34
0
11
53
1.36
33257--33321
26
2.6
25
79
13
62
50
6
1
41
1.36
36388--36418
15
2.1
14
94
5
53
54
6
0
38
1.26
36393--36439
16
3.0
16
84
9
53
59
10
0
29
1.31
36480--36561
34
2.5
34
84
9
100
48
12
0
39
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36598--36689
45
2.0
49
85
12
131
47
10
0
41
1.38
36598--36702
47
2.2
48
83
13
128
48
11
0
40
1.39
36670--36758
41
2.2
40
78
8
90
46
10
1
42
1.45
36794--36832
16
2.3
18
86
8
55
56
5
0
38
1.22
37047--37154
50
2.2
50
93
4
186
22
18
38
20
1.93
37189--37283
29
3.3
29
92
0
154
24
31
30
13
1.94
37270--37341
32
2.2
32
85
0
99
9
31
27
30
1.89
37326--37438
33
3.2
33
86
13
172
14
15
34
36
1.87
42393--42551
60
2.7
60
84
2
194
28
21
6
43
1.77
51221--51264
20
2.2
20
91
0
70
27
20
6
45
1.76

Tables:   1

The End!