Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007350.1 Hibiscus syriacus cultivar Beakdansim tig00019693_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96596

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
566--678
35
3.2
34
88
5
163
41
23
1
33
1.65
1916--1971
29
1.9
29
92
7
96
33
25
21
19
1.97
1976--2097
32
4.0
32
72
14
105
29
20
18
31
1.96
3236--3450
64
3.5
62
80
11
210
27
20
19
33
1.96
4732--4841
35
3.2
33
89
3
148
33
0
22
42
1.60
11387--11426
18
2.2
18
95
0
71
52
0
15
32
1.43
11489--11514
2
13.0
2
100
0
52
50
0
0
50
1.00
15362--15453
31
3.0
31
86
0
121
50
7
14
28
1.70
20720--20750
12
2.6
12
94
0
53
25
0
22
51
1.48
27726--27760
19
1.9
19
88
11
56
48
2
0
48
1.16
29359--29392
17
2.1
16
88
5
50
14
0
2
82
0.79
30704--30747
2
22.0
2
100
0
88
50
0
0
50
1.00
31275--31335
3
20.0
3
89
3
95
32
3
0
63
1.10
31745--31798
20
2.8
19
81
8
56
59
3
1
35
1.26
31754--31808
19
2.8
19
83
2
65
60
3
1
34
1.25
34324--34405
38
2.2
38
97
0
155
35
17
25
21
1.95
41145--41179
2
17.5
2
100
0
70
48
0
0
51
1.00
43539--43579
2
20.5
2
100
0
82
48
0
0
51
1.00
43922--43987
31
2.1
31
91
0
105
43
4
9
42
1.56
44703--44735
2
16.5
2
100
0
66
51
0
0
48
1.00
47822--47849
14
2.0
14
100
0
56
14
14
14
57
1.66
58360--58434
39
1.9
39
86
5
107
26
2
16
54
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64112--64174
28
2.2
28
91
0
99
33
23
22
20
1.97
64531--64638
52
2.1
52
100
0
216
25
11
35
28
1.90
67052--67730
143
4.7
143
93
3
1112
22
14
17
45
1.84
66974--67730
143
5.2
145
90
6
1034
22
14
17
45
1.84
69746--69883
60
2.3
60
80
5
154
32
17
15
34
1.91
74157--74190
3
11.3
3
100
0
68
67
0
0
32
0.91
91172--91205
16
2.1
16
89
10
52
82
0
5
11
0.83
91190--91229
21
1.9
21
85
10
55
70
0
12
17
1.18
92124--92152
6
5.0
6
91
8
51
17
65
17
0
1.27
92747--92924
41
4.3
41
82
4
232
38
23
17
21
1.93
92773--92924
22
7.2
22
75
9
138
38
23
17
20
1.93

Tables:   1

The End!