genome.fa.s7352.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007352.1 Hibiscus syriacus cultivar Beakdansim tig00019703_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70384

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3421--3479	21	2.7	23	72	17	63	37	25	20	16	1.93
3341--3905	116	4.9	116	92	0	932	30	21	20	26	1.98
3653--3711	21	2.8	21	72	15	59	35	25	22	16	1.95
3695--4087	190	2.1	190	91	1	637	30	21	20	27	1.98
3811--3979	74	2.3	73	90	6	268	29	20	20	29	1.98
3582--4211	306	2.1	306	90	1	987	31	20	20	27	1.97
3885--4259	116	3.2	116	91	0	581	32	20	19	27	1.97
3463--4240	422	1.8	422	91	0	1277	31	21	19	27	1.97
4343--4373	15	2.0	16	93	6	55	61	12	19	6	1.53
4411--4440	3	10.0	3	100	0	60	33	0	0	66	0.92
7718--7814	32	3.1	32	76	7	99	38	19	18	23	1.93
8466--8706	79	3.1	79	91	1	369	30	24	9	36	1.87
8515--8630	34	3.1	34	63	23	79	30	23	9	37	1.86
9204--9248	22	2.0	23	82	4	56	28	31	11	28	1.91
9163--9341	96	1.9	95	86	3	227	27	21	16	34	1.95
15504--15823	79	4.1	79	91	0	489	27	25	11	35	1.91
15517--15823	157	2.0	157	90	0	488	28	25	11	34	1.91
16260--16301	19	2.2	19	95	0	75	16	30	23	28	1.96
16448--16500	20	2.7	20	100	0	106	24	26	22	26	2.00
20989--21022	12	3.0	11	91	4	50	85	14	0	0	0.60
25688--25732	19	2.3	20	88	3	65	80	11	8	0	0.92
26813--26846	16	2.1	16	89	10	52	70	5	0	23	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30638--30692	1	55.0	1	81	0	65	0	0	9	90	0.44
30629--30692	10	6.5	10	90	1	76	0	1	10	87	0.61
30638--30692	10	5.5	10	91	8	94	0	0	9	90	0.44
30629--30692	20	3.2	20	90	0	101	0	1	10	87	0.61
31047--31083	15	2.4	16	90	4	58	70	5	10	13	1.32
31540--31585	22	2.0	22	83	12	56	52	13	2	32	1.52
37949--38021	24	3.0	24	81	0	92	41	20	13	24	1.89
38761--38815	18	3.5	18	66	33	54	43	18	0	38	1.50
38741--38946	29	7.2	29	82	6	206	47	16	2	33	1.60
38747--38941	84	2.3	85	78	6	214	48	15	2	33	1.59
38968--38992	5	5.0	5	100	0	50	0	20	60	20	1.37
45199--45269	24	3.0	24	82	0	97	40	15	14	29	1.86
45980--46158	29	6.2	29	83	5	184	46	20	2	30	1.63
47020--47099	34	2.3	34	91	2	124	35	15	16	33	1.90
47285--47575	43	6.8	42	84	3	296	33	18	20	26	1.96
47347--47575	86	2.7	85	89	4	327	33	20	21	24	1.97
47277--47575	129	2.3	129	84	6	372	33	19	21	26	1.97
52399--52527	64	2.0	64	80	3	143	27	21	18	31	1.97
57443--57488	23	2.0	23	91	0	74	36	19	28	15	1.92
57505--57536	16	1.9	17	93	6	57	37	12	28	21	1.90
58975--59023	10	4.7	10	82	9	62	81	0	18	0	0.69
58978--59038	20	3.2	19	78	15	72	80	0	19	0	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58975--59038	32	1.9	33	87	9	94	79	0	20	0	0.73
59880--59934	23	2.4	23	78	3	58	45	5	1	47	1.36
61802--61963	66	2.4	67	84	1	218	25	20	15	38	1.92
62516--62760	135	1.8	135	81	0	310	37	25	13	23	1.92
62771--62960	104	1.8	104	80	6	233	34	18	18	28	1.95
64047--64143	51	1.9	50	81	10	117	18	14	11	55	1.68
68872--68991	59	2.0	59	85	3	161	35	23	16	25	1.95

Tables:   1

The End!