Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007353.1 Hibiscus syriacus cultivar Beakdansim tig00019704_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  109443

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1152--1243
3
31.0
3
77
2
87
34
5
34
25
1.79
1140--1239
12
8.4
12
82
2
85
35
7
35
23
1.82
2580--3060
182
2.7
183
94
3
841
35
14
16
33
1.89
5607--5666
20
2.8
22
82
10
70
36
6
18
38
1.77
6033--6095
23
2.7
23
90
0
90
36
6
19
38
1.77
6033--6105
23
3.2
23
86
3
85
35
5
19
39
1.75
6458--6520
23
2.7
23
90
0
90
36
6
19
38
1.77
6458--6530
23
3.2
23
86
3
85
35
5
19
39
1.75
6674--6740
30
2.2
30
82
10
75
52
4
0
43
1.21
5508--6947
425
3.4
431
98
1
2766
39
8
13
38
1.74
6885--6949
23
2.8
23
90
0
94
35
7
18
38
1.80
7153--7189
18
2.1
18
89
0
56
32
5
10
51
1.60
7145--7191
24
2.0
24
86
0
67
34
4
14
46
1.64
12184--12213
15
1.9
16
93
6
53
16
0
0
83
0.65
13550--13590
2
20.5
2
94
0
73
48
0
2
48
1.14
14751--14784
10
3.4
10
87
0
50
20
5
0
73
1.04
24194--24228
7
5.0
7
96
0
61
88
11
0
0
0.51
25414--25479
22
3.0
22
97
2
125
27
25
27
19
1.99
26395--26429
18
1.9
18
88
11
54
22
17
5
54
1.64
27012--27054
21
2.0
21
86
0
59
16
27
27
27
1.97
30173--30239
22
3.0
22
100
0
134
26
26
26
19
1.99
31164--31198
18
1.9
18
88
11
54
22
17
5
54
1.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31778--31819
21
2.0
21
86
4
59
16
28
26
28
1.97
32767--33454
105
6.7
105
95
2
1073
33
25
18
22
1.96
32767--33454
209
3.3
210
92
4
1080
33
25
18
22
1.96
35319--35357
2
19.5
2
94
0
69
48
0
2
48
1.15
37138--37173
15
2.4
15
100
0
72
47
5
5
41
1.50
41055--41100
15
3.1
15
90
0
74
8
17
65
8
1.45
44733--44816
29
2.8
31
78
7
91
35
13
19
32
1.90
55295--55325
15
2.0
16
93
6
55
32
0
0
67
0.91
55291--55329
16
2.4
17
82
4
53
35
0
0
64
0.94
55426--55452
2
13.5
2
100
0
54
51
0
0
48
1.00
56307--56338
2
16.0
2
100
0
64
50
0
0
50
1.00
56421--56466
14
3.2
14
77
17
58
54
2
15
28
1.53
56415--56628
32
6.8
32
82
9
244
50
7
14
28
1.69
56417--56628
95
2.3
93
91
4
338
49
7
15
28
1.70
56447--56628
63
2.9
63
85
4
233
49
7
14
28
1.70
62328--62361
16
2.1
17
94
5
61
35
26
5
32
1.81
65574--65683
20
5.6
20
92
5
179
23
23
4
48
1.69
68562--68588
14
1.9
14
100
0
54
44
7
3
44
1.49
74462--74498
19
2.0
18
94
5
65
45
5
5
43
1.49
102528--102572
20
2.5
18
80
19
58
24
24
11
40
1.87
102541--102578
20
1.9
20
100
0
76
23
28
10
36
1.88
108342--108456
48
2.4
48
78
8
112
47
1
0
49
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108417--108456
18
2.3
18
86
4
55
55
0
2
42
1.13
108554--108607
21
2.5
20
77
16
56
50
0
0
50
1.00
108525--108596
29
2.5
29
79
0
81
44
2
0
52
1.15
108744--108777
14
2.4
14
90
0
50
32
14
14
38
1.87
108786--108831
15
3.1
15
78
6
58
32
17
8
41
1.80

Tables:   1

The End!