Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007355.1 Hibiscus syriacus cultivar Beakdansim tig00019715_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72223

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
847--946
6
16.5
6
89
6
157
82
0
16
2
0.77
2516--2760
131
1.9
130
80
5
289
32
15
18
34
1.92
4006--4053
19
2.3
21
79
10
55
62
6
2
29
1.31
6350--6417
19
3.5
19
83
2
82
30
16
7
45
1.74
25801--25842
15
2.8
15
85
0
57
52
4
19
23
1.65
26639--26766
64
2.0
64
89
0
193
29
16
10
43
1.80
27970--28048
20
3.9
20
78
3
77
36
17
15
30
1.91
29336--29389
21
2.6
21
90
0
81
40
25
7
25
1.82
36311--36424
57
2.0
56
96
1
210
36
9
14
39
1.78
36730--36769
21
1.9
21
85
10
55
25
27
20
27
1.99
37353--37434
40
2.0
40
97
0
155
37
7
20
34
1.81
37364--37429
22
3.2
22
61
30
54
36
9
21
33
1.85
40386--40861
215
2.3
210
90
4
737
52
8
11
28
1.65
40947--41216
2
134.0
2
73
13
171
47
2
2
47
1.32
40995--41025
9
3.4
9
100
0
62
35
0
0
64
0.94
41692--41782
2
45.5
2
100
0
182
49
0
0
50
1.00
41879--41921
19
2.4
18
88
7
61
46
0
27
25
1.53
41889--41933
19
2.3
20
92
3
74
46
0
31
22
1.52
41854--41943
46
2.0
46
82
4
110
45
0
26
27
1.54
41901--41944
19
2.2
20
84
4
54
50
0
22
27
1.50
42139--42262
2
64.0
2
68
20
68
48
1
4
45
1.33
42140--42262
34
3.9
32
75
12
103
48
1
4
44
1.33
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42430--42490
13
4.3
13
81
18
77
50
6
1
40
1.38
42409--42448
20
2.0
20
85
0
53
45
7
10
37
1.66
42399--42490
31
3.0
32
79
9
102
47
7
5
39
1.55
42425--42481
2
27.0
2
75
10
51
49
5
3
42
1.42
42565--42636
14
5.2
14
72
12
60
48
26
0
25
1.51
42606--42677
7
10.4
7
81
3
56
47
29
0
23
1.52
42565--42672
41
2.6
42
88
2
155
49
25
0
25
1.51
44051--44099
19
2.6
19
90
6
73
42
6
16
34
1.73
44177--44228
22
2.3
23
83
9
72
21
30
21
26
1.98
44799--44833
18
1.9
18
88
0
52
28
31
20
20
1.97
47159--47186
2
14.0
2
100
0
56
50
0
0
50
1.00
53111--53150
21
1.9
21
90
10
64
37
7
0
55
1.29
54886--54932
19
2.5
19
86
10
62
31
19
23
25
1.98
54901--55007
45
2.4
45
90
6
164
33
16
20
28
1.95
55077--55101
12
2.1
12
100
0
50
52
0
8
40
1.31
55376--55448
14
5.2
14
74
9
60
50
28
0
20
1.48
55383--55443
21
2.9
21
87
4
79
52
26
0
21
1.47
55816--55866
2
25.0
2
82
11
59
50
3
1
43
1.31
55947--55998
21
2.5
21
84
6
70
50
25
1
23
1.60
56490--56533
16
2.8
16
93
6
72
45
9
18
27
1.79
57236--57278
2
21.5
2
95
0
77
46
0
2
51
1.13
57234--57284
8
5.8
9
88
11
63
45
0
3
50
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57680--57720
9
4.6
9
85
8
57
82
0
4
12
0.81
62015--62075
14
4.3
14
77
4
68
83
0
11
4
0.79
61999--62092
27
3.4
28
69
16
70
78
1
11
8
1.01
62040--62083
16
2.9
16
83
6
56
79
0
9
11
0.93
62772--62822
2
25.5
2
100
0
102
49
0
0
50
1.00
66866--66932
3
22.7
3
85
8
84
38
0
0
61
0.96
68118--68159
15
2.9
14
92
7
66
40
0
0
59
0.97
68402--68439
18
2.1
19
90
5
60
34
0
0
65
0.93

Tables:   1

The End!