genome.fa.s7356.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007356.1 Hibiscus syriacus cultivar Beakdansim tig00019716_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116197

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--149	7	21.3	7	100	0	298	57	0	42	0	0.99
1370--1518	76	1.9	77	97	1	282	22	10	22	45	1.81
2391--2434	20	2.1	21	84	12	56	29	11	4	54	1.56
3362--3387	1	26.0	1	100	0	52	100	0	0	0	0.00
7086--7123	3	12.7	3	100	0	76	34	0	0	65	0.93
8595--8641	14	3.5	13	80	13	51	40	2	2	55	1.24
9271--9314	17	2.6	17	85	3	54	31	6	0	61	1.22
19967--20001	11	3.2	11	92	8	54	85	0	14	0	0.59
19963--20001	19	2.0	19	95	5	69	82	0	17	0	0.68
20313--20337	13	1.9	13	100	0	50	28	8	0	64	1.22
21125--22282	83	14.0	83	97	0	2171	28	14	22	34	1.93
23074--23624	228	2.4	223	90	4	836	37	14	20	27	1.91
23081--23624	113	4.8	113	87	5	785	37	14	20	27	1.91
23566--23642	40	1.9	40	94	5	138	48	10	23	18	1.78
23635--23865	65	3.6	65	98	0	437	36	10	19	34	1.86
23890--23989	40	2.5	40	96	0	182	50	9	22	19	1.75
23798--24109	154	2.0	154	92	1	520	39	11	19	29	1.86
24355--24416	3	20.7	3	96	0	115	33	1	0	64	1.03
25880--25926	14	3.5	13	80	13	51	40	2	2	55	1.24
35251--35402	76	2.0	76	97	0	286	34	11	16	37	1.84
36543--36728	93	2.0	93	100	0	372	38	10	6	44	1.65
37366--37433	31	2.2	32	94	2	120	38	13	11	36	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37924--38001	31	2.5	31	85	4	104	35	12	12	38	1.82
38300--38354	4	13.8	4	92	0	56	23	9	23	43	1.82
39748--39809	14	4.4	14	73	18	56	43	29	1	25	1.64
54002--54034	12	2.8	12	95	0	57	30	45	9	15	1.77
54292--54327	17	2.1	17	100	0	72	33	5	5	55	1.46
61873--61929	29	2.0	29	89	0	87	38	17	17	26	1.92
62063--62104	2	21.0	2	100	0	84	50	0	0	50	1.00
71523--71573	26	2.0	25	84	3	66	35	0	1	62	1.06
72922--72948	14	1.9	14	100	0	54	59	3	7	29	1.42
72973--73045	27	2.7	27	87	8	112	45	10	21	21	1.83
78180--78231	17	3.2	17	75	10	54	32	3	13	50	1.60
91587--91725	39	3.6	39	83	4	174	37	13	23	25	1.92
94214--94376	81	2.0	81	97	0	308	36	15	26	20	1.93
99832--99898	23	2.9	23	81	0	71	25	14	16	43	1.86
102841--102880	9	4.4	9	93	0	62	30	0	0	70	0.88
103376--103441	15	4.4	15	84	0	96	37	4	18	39	1.71
103376--103457	30	2.8	30	86	1	112	39	6	17	37	1.74
103370--103457	15	5.9	15	77	7	90	40	5	18	35	1.74
103705--103783	33	2.4	33	100	0	158	46	0	7	45	1.31
103789--103852	27	2.2	30	81	10	71	45	0	3	51	1.17
103825--103887	23	2.7	23	80	5	63	46	1	1	50	1.20
103863--103908	11	4.3	11	76	13	51	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103870--103912	21	2.0	20	91	8	68	55	0	0	44	0.99
103878--103925	7	6.7	7	79	11	53	58	0	0	41	0.98
103879--103968	24	3.8	24	68	20	64	57	1	0	41	1.06
104151--104267	42	2.8	42	88	0	153	48	15	16	19	1.81
105291--105327	20	1.9	19	89	10	58	45	10	24	18	1.81
108704--108747	24	1.9	22	81	9	52	31	2	0	65	1.05

Tables:   1

The End!