genome.fa.s7358.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007358.1 Hibiscus syriacus cultivar Beakdansim tig00019730_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104271

Tables:   1   

This is table  1  of  1  ( 80 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
879--1169	43	6.7	43	84	5	315	27	20	19	32	1.97
879--1169	86	3.4	86	82	5	347	27	20	19	32	1.97
906--1146	129	1.9	129	86	5	353	26	20	19	33	1.97
922--1189	130	2.1	129	82	6	319	26	20	19	32	1.97
1341--1419	32	2.5	32	89	2	115	37	18	13	29	1.90
2291--2464	29	6.1	29	83	4	174	33	2	15	48	1.58
3182--3241	24	2.5	24	77	0	66	28	18	15	38	1.91
9411--9475	28	2.3	28	97	0	121	18	43	21	16	1.88
9423--9485	5	12.0	5	86	9	90	19	41	20	19	1.91
9508--9711	29	7.1	28	82	5	110	31	1	17	48	1.58
9571--9647	27	2.8	26	78	7	82	33	2	10	53	1.49
9640--9695	17	3.6	17	68	22	50	37	0	16	46	1.47
10426--10504	24	3.3	24	82	1	97	24	15	20	40	1.90
15226--15263	2	19.0	2	100	0	76	50	0	0	50	1.00
16067--16138	20	3.7	20	94	1	128	26	20	26	26	1.99
16068--16158	39	2.3	39	87	9	123	27	18	26	27	1.98
16763--17073	78	4.0	79	89	1	455	34	11	25	28	1.90
23308--23381	20	3.7	19	72	15	60	31	14	28	25	1.95
23250--23450	95	2.1	96	83	2	271	33	17	22	26	1.96
23870--24110	79	3.1	79	89	1	351	36	10	23	29	1.88
24885--24909	13	1.9	13	100	0	50	48	8	16	28	1.74
26515--26573	25	2.3	25	80	16	59	54	1	1	42	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28128--28157	3	10.0	3	100	0	60	66	0	0	33	0.92
28195--28225	15	2.0	16	93	6	55	6	19	12	61	1.53
28310--28699	116	3.4	115	86	3	516	27	19	22	31	1.97
28590--28754	74	2.2	74	95	0	294	30	21	21	26	1.98
28482--28870	190	2.0	190	93	0	661	28	20	21	29	1.98
28664--29228	116	4.9	116	93	0	950	27	21	21	29	1.98
28358--28986	306	2.1	306	91	0	1026	27	20	21	30	1.98
29090--29148	21	2.8	21	75	12	59	16	20	25	37	1.93
32731--32768	15	2.5	15	86	4	58	2	18	0	78	0.86
34233--34269	19	2.0	18	89	5	56	32	21	0	45	1.52
35258--35291	17	1.9	18	88	5	52	70	2	5	20	1.21
51736--51974	95	2.5	94	85	5	304	32	15	25	25	1.96
51921--51974	22	2.7	20	83	13	74	29	12	31	25	1.93
51924--51967	22	2.0	22	95	0	79	31	11	29	27	1.91
52404--52703	45	6.7	45	83	3	338	38	9	22	29	1.86
52404--52664	90	2.9	90	87	2	373	38	10	22	28	1.87
52402--52703	135	2.2	133	84	4	374	38	9	21	29	1.85
58722--59015	95	3.1	93	83	7	360	33	15	24	25	1.95
58981--59030	20	2.5	20	84	9	59	32	14	30	24	1.94
59420--59577	45	3.5	45	82	1	174	36	11	23	29	1.90
60327--60364	6	6.3	6	82	11	51	81	2	15	0	0.80
60388--60431	5	8.8	5	83	16	56	79	0	20	0	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60393--60429	19	2.0	18	94	5	65	78	0	21	0	0.75
60388--60433	11	4.0	11	86	10	65	78	0	21	0	0.76
60611--60646	14	2.6	15	83	16	51	16	38	0	44	1.48
64984--65325	44	7.7	44	89	2	497	39	7	21	31	1.81
65045--65119	20	3.6	19	70	26	62	42	4	20	33	1.70
64984--65325	133	2.6	133	91	1	569	39	7	21	31	1.81
64984--65334	89	4.0	88	88	3	490	40	7	20	31	1.80
65178--65245	20	3.2	20	67	28	59	41	4	20	33	1.72
65737--65813	26	3.0	26	86	3	111	22	18	16	42	1.89
65915--65948	17	2.0	17	88	0	50	38	5	14	41	1.70
68096--68244	47	3.2	47	93	1	248	33	20	6	40	1.77
70634--70667	17	2.1	17	88	5	52	32	23	5	38	1.79
70917--70962	22	2.0	23	83	4	58	47	0	17	34	1.48
72697--72787	30	3.0	30	74	6	94	34	20	19	25	1.97
72695--72785	31	3.0	30	80	7	103	34	19	19	26	1.96
73050--73090	2	20.5	2	100	0	82	48	0	0	51	1.00
73805--73859	23	2.6	20	81	15	74	20	29	25	25	1.99
73815--73858	23	1.9	23	95	0	79	20	31	22	25	1.98
75350--75394	22	2.0	22	86	0	63	35	20	33	11	1.88
82747--82771	13	1.9	13	100	0	50	48	0	0	52	1.00
82971--83010	12	3.3	12	78	0	53	47	17	12	22	1.81
82939--83010	24	3.0	24	85	0	90	52	16	9	20	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82966--83033	24	2.8	24	84	4	84	48	14	13	23	1.79
85559--85588	15	1.9	15	93	6	51	83	6	0	10	0.81
85566--85603	19	1.9	19	94	5	67	84	7	0	7	0.79
85605--85704	45	2.2	45	94	3	175	43	7	22	28	1.79
87012--87056	19	2.4	19	96	0	81	37	26	15	20	1.92
89408--89446	17	2.3	17	90	0	60	35	15	7	41	1.76
90769--90828	21	2.8	22	70	12	54	35	13	20	31	1.91
90774--90837	21	3.0	21	67	13	51	37	15	18	28	1.92
93056--93087	13	2.5	13	100	0	64	18	25	21	34	1.96
93656--93929	69	4.0	67	73	12	223	24	10	35	28	1.89
93667--93810	66	2.1	66	78	8	148	23	12	35	28	1.91
93647--93920	141	1.9	141	81	5	331	23	11	36	28	1.89
94885--94926	17	2.5	17	77	11	50	59	0	11	28	1.33
100986--101044	23	2.6	22	72	17	57	62	5	10	22	1.46

Tables:   1

The End!