Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007359.1 Hibiscus syriacus cultivar Beakdansim tig00019744_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97415

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17019--17237
90
2.4
90
90
3
325
26
14
16
42
1.86
21721--21753
16
2.1
16
88
11
50
63
0
3
33
1.10
24516--24564
24
2.0
24
92
0
80
34
18
14
32
1.91
31854--31896
18
2.3
19
80
8
52
39
4
0
55
1.20
31898--31938
20
2.0
21
85
4
57
56
4
0
39
1.21
32104--32461
158
2.3
155
85
6
454
45
6
17
30
1.74
32139--32513
155
2.4
158
84
6
494
47
6
17
29
1.72
33877--33917
21
2.0
21
85
9
57
51
0
2
46
1.14
34186--34287
34
3.0
34
98
1
197
41
23
11
23
1.87
48700--48767
32
2.1
32
86
5
93
8
20
20
50
1.75
49400--49523
42
3.0
42
82
5
144
40
15
23
20
1.91
52456--52557
28
3.6
28
78
5
89
38
15
23
22
1.93
52492--52573
29
2.9
29
83
1
94
39
17
23
20
1.92
54777--54845
35
2.0
35
100
0
138
43
2
0
53
1.15
54768--54848
2
42.0
2
81
16
100
45
2
0
51
1.14
61107--61955
84
10.3
84
81
5
872
30
25
20
23
1.99
61107--61955
164
5.1
165
86
3
892
30
25
20
23
1.99
62518--62557
2
21.0
2
80
19
50
47
2
0
50
1.14
71701--71733
2
16.5
2
100
0
66
51
0
0
48
1.00
73673--73705
16
2.1
16
94
0
57
24
12
21
42
1.86
75447--75486
19
2.1
19
100
0
80
42
5
27
25
1.75
79060--79094
11
3.0
12
91
8
63
48
17
17
17
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
79410--79444
7
5.0
7
100
0
70
0
42
14
42
1.45
80657--80756
40
2.5
40
79
6
130
23
13
13
51
1.75
85189--85245
27
2.1
27
83
0
69
45
0
1
52
1.11

Tables:   1

The End!