genome.fa.s7360.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007360.1 Hibiscus syriacus cultivar Beakdansim tig00019745_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93852

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10573--10859	54	5.3	54	89	0	405	29	19	19	31	1.96
14849--14882	17	2.1	16	88	5	50	82	2	0	14	0.79
14870--14956	39	2.3	35	75	21	86	60	3	4	31	1.33
17505--17529	13	1.9	13	100	0	50	64	0	8	28	1.22
21977--22234	54	4.8	54	86	0	354	34	20	17	27	1.95
22581--22863	54	5.2	54	84	1	318	33	19	18	29	1.95
22582--22861	108	2.6	108	84	1	355	33	18	18	29	1.95
25514--25568	24	2.3	24	93	0	92	25	36	3	34	1.74
37288--37316	9	3.2	9	100	0	58	48	20	10	20	1.79
37327--37718	186	2.1	186	95	0	705	45	8	3	42	1.49
37651--37708	20	2.9	20	76	7	55	44	1	1	51	1.21
40005--40052	26	1.9	26	87	8	73	45	6	2	45	1.40
40004--40061	26	2.2	27	79	14	68	44	6	1	46	1.40
42214--42300	25	3.4	25	76	14	90	45	18	13	21	1.84
43381--43451	34	2.1	34	84	7	92	23	30	15	29	1.95
43812--43856	8	6.1	8	75	19	53	24	15	37	22	1.93
43819--43867	13	3.7	12	78	21	53	26	16	36	20	1.93
43812--43874	28	2.2	29	97	2	119	26	17	34	20	1.95
44056--44113	30	1.9	30	96	0	107	46	18	3	31	1.66
55789--55814	12	2.2	12	100	0	52	34	0	15	50	1.45
59239--59302	30	2.1	30	88	0	92	17	25	7	50	1.72
59795--59880	45	1.9	45	88	4	129	40	16	13	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59832--61372	543	2.8	542	92	2	2519	40	13	12	32	1.83
62433--62604	90	1.9	90	93	0	299	36	12	6	44	1.69
66725--66761	14	2.6	14	82	0	56	10	5	16	67	1.38
67249--67287	19	2.1	19	100	0	78	20	15	43	20	1.88
78219--78252	17	2.0	17	100	0	68	35	17	17	29	1.93
88460--88702	60	4.1	60	87	2	330	38	13	20	27	1.91
88705--88792	46	1.9	46	92	0	149	42	14	21	21	1.89
88709--88821	46	2.5	46	79	5	129	43	14	20	22	1.87
92452--92692	60	4.0	58	83	6	302	37	13	23	25	1.92
92452--92692	120	2.0	120	87	3	351	37	13	23	25	1.92

Tables:   1

The End!