genome.fa.s7361.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007361.1 Hibiscus syriacus cultivar Beakdansim tig00019749_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  152893

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5090--5211	64	1.9	65	89	5	194	34	8	19	37	1.82
7244--7271	14	2.0	14	100	0	56	50	21	14	14	1.78
9060--9086	6	4.5	6	100	0	54	18	14	0	66	1.25
12630--12690	16	3.8	16	100	0	122	72	0	16	11	1.13
12616--12728	32	3.7	30	82	13	124	71	1	15	10	1.21
12630--12744	32	3.7	32	82	11	123	73	1	14	9	1.16
13598--14512	138	6.6	138	91	1	1431	38	16	20	24	1.93
16158--16188	15	2.0	16	93	6	55	32	6	3	58	1.40
24480--24544	29	2.2	29	86	5	87	47	0	3	49	1.17
24506--24544	14	2.7	15	84	8	53	51	0	2	46	1.14
24935--24967	15	2.3	15	89	5	50	45	0	0	54	0.99
24886--24967	29	2.9	28	71	8	78	50	1	1	47	1.16
24223--25057	423	2.0	416	90	4	1302	40	9	7	41	1.67
27160--27208	3	16.3	3	100	0	98	67	0	0	32	0.91
37805--37838	12	2.7	13	86	9	52	41	5	8	44	1.60
37770--37917	74	2.0	74	93	0	251	43	8	6	41	1.59
39670--39702	12	2.6	13	90	4	50	51	3	9	36	1.49
39739--39773	16	2.1	16	89	5	52	54	8	0	37	1.31
55529--55578	20	2.5	20	96	0	91	34	18	24	24	1.96
55547--55731	95	1.9	95	81	7	223	34	17	22	25	1.96
56158--56408	45	5.6	45	83	2	272	37	11	21	29	1.88
62441--62620	95	1.9	96	83	1	236	35	16	21	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63106--63434	45	7.3	45	88	1	462	38	9	21	31	1.85
63066--63451	90	4.3	90	87	2	499	37	9	22	30	1.86
65823--65895	20	3.5	20	68	17	51	57	1	0	41	1.07
65825--65893	23	3.3	22	76	11	74	57	1	0	40	1.07
66586--66612	12	2.2	12	100	0	54	51	14	0	33	1.43
67225--67265	2	20.5	2	100	0	82	48	0	0	51	1.00
70061--70198	59	2.6	52	80	11	145	23	14	25	36	1.93
70092--70208	59	2.0	59	89	0	180	27	14	23	34	1.94
78197--78528	56	5.9	56	88	0	468	24	19	18	37	1.94
78848--79048	94	2.1	95	83	2	244	24	23	15	35	1.95
79927--80030	36	2.8	36	82	2	127	39	13	15	31	1.86
80437--80463	2	13.5	2	100	0	54	48	0	0	51	1.00
80526--80563	20	1.9	20	88	0	58	26	7	2	63	1.35
81220--81297	39	2.0	40	82	9	99	34	11	1	52	1.46
81471--81756	106	2.7	106	94	1	493	27	18	26	26	1.98
87441--87492	21	2.5	21	100	0	104	38	17	11	32	1.85
88038--88497	59	7.8	59	91	2	710	33	11	20	35	1.88
88038--88509	178	2.7	177	91	3	745	33	11	19	35	1.88
90068--90107	21	2.0	21	85	9	57	52	0	0	47	1.00
94926--94965	21	1.9	21	94	0	71	72	0	5	22	1.04
95593--95655	19	3.2	19	75	4	54	55	12	0	31	1.37
95613--95777	76	2.2	76	85	3	226	56	10	3	30	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103076--103173	50	2.0	49	90	4	153	33	17	7	41	1.77
107417--107463	18	2.6	18	73	6	51	63	0	12	23	1.28
108598--108628	3	10.3	3	92	0	53	64	0	3	32	1.09
109754--109778	11	2.3	11	100	0	50	52	0	16	32	1.44
117580--117639	30	2.0	31	93	3	104	25	3	35	36	1.72
117580--117636	31	2.0	27	81	18	64	26	3	36	33	1.74
117706--117730	11	2.3	11	100	0	50	52	0	16	32	1.44
118343--118402	30	2.0	31	83	9	79	31	10	26	31	1.89
120756--121123	54	6.8	54	81	4	348	34	13	17	34	1.89
120768--121069	106	2.8	109	81	8	334	35	11	17	36	1.86
120993--121194	54	3.7	54	82	5	230	36	18	16	28	1.93
121910--122799	227	3.9	225	80	8	970	41	14	14	30	1.85
123320--123363	18	2.4	18	96	0	79	27	0	27	45	1.54
128942--129029	29	3.0	30	70	9	81	39	2	7	50	1.44
130615--130755	60	2.3	60	81	9	162	33	18	4	43	1.72
130964--131056	29	3.1	29	64	19	66	44	4	19	32	1.70
130944--131067	60	2.1	60	92	3	205	41	4	22	32	1.73
138700--138737	20	1.9	20	89	10	60	28	13	18	39	1.88
142802--142837	19	1.9	18	94	5	63	16	16	0	66	1.25
143028--143069	6	6.8	6	86	10	50	85	2	11	0	0.68
143027--143071	13	3.5	12	85	11	54	86	2	11	0	0.65
143027--143072	20	2.4	19	85	3	65	84	4	10	0	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
143034--143063	7	4.4	7	91	8	53	86	0	13	0	0.57

Tables:   1

The End!