genome.fa.s7363.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007363.1 Hibiscus syriacus cultivar Beakdansim tig00019756_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107791

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10004--10068	16	3.9	16	76	11	60	43	1	0	55	1.09
10607--10721	60	1.9	60	84	7	153	20	31	26	20	1.98
11199--11285	15	5.9	14	72	20	63	64	2	2	31	1.18
17929--17999	37	1.9	37	88	5	108	46	4	0	49	1.21
18305--18371	31	2.2	31	88	0	98	34	17	23	23	1.96
20464--20559	32	2.9	33	77	14	90	51	8	3	37	1.48
20966--21026	21	2.9	21	80	0	68	32	24	21	21	1.98
22813--22858	20	2.3	20	80	0	56	19	2	28	50	1.60
23922--23951	14	2.1	14	100	0	60	23	0	0	76	0.78
24595--24639	14	3.2	14	96	0	81	6	8	28	55	1.56
24615--24684	24	2.9	24	78	0	77	15	8	17	58	1.61
25407--25481	10	7.7	10	67	21	52	9	10	21	58	1.59
25413--25477	16	4.1	16	93	0	112	7	10	23	58	1.57
25547--25587	16	2.7	16	85	7	59	12	9	17	60	1.57
26204--26244	18	2.4	18	80	15	52	53	2	14	29	1.54
28709--28821	20	5.6	20	84	3	136	40	18	23	17	1.91
28706--28821	41	2.8	41	88	2	153	41	18	22	18	1.90
28789--28884	41	2.3	41	82	3	113	38	21	18	20	1.93
28810--28904	20	4.7	20	80	2	91	34	24	17	23	1.96
29092--29135	22	2.0	22	95	0	79	20	45	15	18	1.85
29399--29436	20	1.9	20	88	0	58	13	15	21	50	1.78
30756--30800	18	2.5	18	85	0	63	26	42	15	15	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31272--31338	20	3.4	20	81	2	73	38	23	22	14	1.92
31327--31384	14	3.9	14	79	16	71	48	25	17	8	1.75
31311--31401	32	2.8	33	94	3	166	47	23	18	10	1.80
31272--31406	19	7.6	19	71	19	85	42	23	20	12	1.86
31418--31507	14	5.9	14	76	19	90	8	18	25	46	1.78
31415--31506	32	2.9	32	98	0	175	8	19	26	45	1.79
31432--31492	18	3.6	18	78	17	76	9	21	24	44	1.82
31517--31562	20	2.4	19	92	3	74	15	23	26	34	1.94
33432--33467	14	2.6	14	90	0	54	30	0	22	47	1.52
33584--33651	19	3.8	19	85	14	101	47	17	22	13	1.82
33670--33726	20	2.8	20	94	0	96	21	22	17	38	1.93
34094--34129	14	2.6	14	90	0	54	30	0	22	47	1.52
35679--35797	20	6.7	19	63	21	51	42	18	25	14	1.88
35704--35791	33	2.6	33	92	1	140	38	20	27	13	1.90
35801--35867	19	3.5	19	82	8	73	10	16	23	49	1.77
36424--36503	21	3.9	21	75	6	65	18	18	20	42	1.89
36387--36480	20	4.7	20	80	2	89	23	18	24	34	1.96
36408--36542	41	3.3	41	81	4	130	20	20	20	38	1.94
36469--36564	20	4.7	21	76	5	97	18	22	17	40	1.91
36469--36564	41	2.3	41	96	0	174	18	22	17	40	1.91
36890--36930	7	5.9	7	100	0	82	43	41	0	14	1.45
38140--38188	22	2.2	23	80	16	59	42	2	12	42	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39010--39053	21	2.1	21	100	0	88	34	0	4	61	1.16
41224--41268	2	23.5	2	86	8	67	44	0	0	55	0.99
55049--55346	160	1.8	163	86	5	435	47	3	7	41	1.48
55427--55486	2	30.0	2	96	0	111	48	0	1	50	1.11
64896--64930	18	1.9	18	88	0	52	28	17	0	54	1.43
67632--67665	2	17.0	2	93	0	59	47	0	0	52	1.00
71309--71357	21	2.3	21	96	0	89	26	16	22	34	1.95
71499--71595	42	2.3	41	81	15	103	50	3	1	45	1.24
71543--71595	21	2.7	18	71	18	52	49	0	0	50	1.00
76402--76427	13	2.0	13	100	0	52	61	0	7	30	1.24
76538--76625	46	1.9	46	85	0	122	36	14	12	36	1.84
88109--88139	12	2.7	11	90	9	53	35	0	0	64	0.94
89188--89218	14	2.2	14	94	0	53	22	22	22	32	1.98
100172--100234	29	2.2	29	94	0	108	15	28	31	23	1.96
100781--100849	27	2.6	27	77	13	79	31	0	11	56	1.35
101254--101289	15	2.3	16	85	9	56	41	0	8	50	1.33
101553--101611	26	2.3	25	75	18	66	47	8	3	40	1.51
101971--101996	12	2.2	12	100	0	52	15	30	19	34	1.93
104425--104517	26	3.6	26	91	5	143	46	3	8	41	1.50
106808--106838	15	2.1	14	94	5	53	54	6	0	38	1.26
107280--107350	26	2.9	24	76	23	69	2	36	0	60	1.11
107287--107350	13	4.9	13	73	16	53	1	35	0	62	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107302--107349	22	2.2	21	96	3	87	0	37	0	62	0.95
107354--107398	22	2.0	23	95	4	83	6	40	4	48	1.49
107515--107570	27	2.1	27	96	0	103	25	23	25	26	2.00
107638--107716	28	2.8	29	84	5	99	21	30	32	15	1.94
107748--107774	13	2.1	13	100	0	54	14	40	14	29	1.86

Tables:   1

The End!