genome.fa.s7364.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007364.1 Hibiscus syriacus cultivar Beakdansim tig00019757_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  120705

Tables:   1   

This is table  1  of  1  ( 81 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9829--9891	18	3.3	19	79	18	76	58	0	0	41	0.98
9838--9914	16	5.0	14	72	18	55	58	1	2	37	1.20
9819--9891	26	3.0	25	71	11	62	61	0	0	38	0.96
16134--16158	2	12.5	2	100	0	50	52	0	0	48	1.00
16544--16947	121	3.4	120	83	7	419	45	6	15	31	1.73
23802--23848	24	1.9	24	82	4	58	61	0	10	27	1.29
47401--47449	21	2.3	21	79	6	64	24	18	18	38	1.93
47443--47510	20	3.3	20	91	2	100	42	14	22	20	1.88
47496--47633	41	3.4	42	78	6	142	34	23	18	22	1.96
47499--47613	20	5.7	20	81	6	115	32	25	19	23	1.97
48163--48254	20	4.6	20	95	0	148	40	21	22	15	1.91
48273--48337	19	3.7	19	84	13	86	13	20	18	47	1.82
49923--50012	42	2.2	42	87	2	137	21	15	41	22	1.90
49950--50010	21	2.9	21	73	9	70	21	13	42	22	1.87
50353--50433	20	4.1	20	88	0	81	34	24	18	22	1.96
50359--50444	40	2.2	40	82	4	102	34	25	20	18	1.96
50379--50465	20	4.4	20	86	1	113	36	22	24	16	1.94
50438--50503	19	3.7	19	73	19	70	48	19	19	12	1.80
50510--50606	19	5.6	19	71	22	97	12	19	21	46	1.83
50532--50590	14	3.9	14	76	20	64	10	16	23	49	1.77
50515--50606	33	2.8	33	98	0	175	11	18	21	47	1.80
50591--50645	20	2.8	19	83	8	65	16	23	23	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51178--51225	18	2.7	18	93	0	87	14	12	45	27	1.81
52545--52587	20	2.2	20	91	0	68	51	20	18	9	1.74
52867--52910	22	2.0	22	95	0	79	18	15	45	20	1.85
53097--53210	20	5.7	20	82	6	122	23	17	26	32	1.97
53077--53211	20	6.7	19	76	10	90	23	17	25	34	1.96
53077--53212	41	3.3	41	81	6	168	23	16	25	34	1.95
53200--53251	20	2.5	21	81	3	61	23	23	15	38	1.92
54222--54268	20	2.3	20	96	0	85	48	19	12	19	1.80
54237--54279	10	4.3	10	78	0	50	53	18	13	13	1.73
54222--54275	20	2.7	20	91	0	72	50	18	12	18	1.78
61470--61539	25	2.8	25	86	2	97	20	27	25	27	1.99
61494--61582	24	3.7	23	79	11	76	17	25	24	31	1.97
62338--62417	23	3.5	23	89	0	115	31	25	25	18	1.98
62430--62752	103	3.1	103	98	0	619	37	23	13	25	1.92
64143--64219	24	3.4	23	91	7	106	27	22	18	32	1.97
64159--64219	24	2.5	24	100	0	122	24	21	19	34	1.96
64207--64347	64	2.2	63	81	7	160	26	24	17	32	1.96
67545--67581	19	1.9	19	94	0	65	62	0	2	35	1.10
71107--71137	14	2.2	14	94	0	53	58	0	0	41	0.98
72735--72791	22	2.6	22	94	0	96	15	21	19	43	1.87
73052--73078	6	4.5	6	100	0	54	44	0	0	55	0.99
76012--76054	13	3.4	13	84	15	63	81	9	9	0	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76009--76066	16	3.4	17	77	17	57	82	6	10	0	0.83
76012--76066	26	2.2	25	87	9	76	81	7	10	0	0.86
76630--76671	22	1.9	22	95	0	75	35	23	14	26	1.93
77673--77750	36	2.2	36	83	4	95	29	21	15	33	1.94
78092--78314	64	3.5	65	90	3	319	34	26	18	20	1.96
78157--78492	171	2.0	171	96	0	620	33	25	19	21	1.96
77992--78456	235	2.0	231	90	4	738	34	26	18	20	1.96
78326--78456	65	2.0	66	92	4	221	34	27	19	19	1.95
78221--78422	106	1.9	104	87	6	264	35	26	18	18	1.95
81030--81087	13	4.4	13	77	18	57	77	8	13	0	0.98
81037--81087	14	3.8	14	80	15	63	78	9	11	0	0.97
81039--81094	18	3.2	17	76	18	53	82	7	10	0	0.85
81040--81094	26	2.2	25	87	9	76	81	7	10	0	0.86
81037--81094	13	4.5	13	80	10	66	79	8	12	0	0.94
81385--81468	43	2.0	42	90	4	134	36	13	4	45	1.64
82420--82481	2	34.5	2	76	20	57	40	0	3	56	1.15
82515--82572	18	3.1	20	76	16	70	24	5	0	70	1.07
83709--83775	28	2.4	28	92	2	109	44	34	7	13	1.72
83737--84178	212	2.1	214	90	4	712	37	26	11	24	1.90
85855--85899	2	22.5	2	86	0	63	42	0	6	51	1.28
89729--89792	23	2.9	22	88	2	83	21	15	15	46	1.83
89735--89792	22	2.6	23	88	2	82	17	17	17	48	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98422--98454	12	2.6	13	85	9	50	69	3	0	27	1.03
102876--103088	103	2.1	103	91	0	345	25	13	23	37	1.92
103112--103172	23	2.7	23	86	0	77	21	21	26	31	1.98
107465--107511	19	2.5	19	100	0	94	29	21	25	23	1.99
108327--108535	104	2.0	104	90	0	328	26	15	22	35	1.94
108562--108621	23	2.6	23	89	0	84	21	15	26	36	1.93
109475--109531	28	2.0	29	82	3	71	29	3	22	43	1.70
111017--111056	14	2.9	14	85	7	55	82	5	5	7	0.94
115101--115256	78	2.0	77	91	1	249	40	7	19	32	1.80
119512--120097	205	2.8	208	88	6	858	50	8	11	29	1.68
120129--120215	20	4.2	20	76	11	95	41	4	6	47	1.51
120111--120216	20	5.0	21	75	14	92	42	4	6	46	1.51
120384--120424	18	2.2	19	83	12	50	36	0	7	56	1.27
120472--120523	25	2.0	28	85	11	74	38	7	1	51	1.42
120498--120700	30	6.7	31	68	24	105	40	7	8	43	1.64

Tables:   1

The End!