genome.fa.s7365.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007365.1 Hibiscus syriacus cultivar Beakdansim tig00019758_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  162358

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1551--1674	2	60.5	2	69	16	67	47	4	2	45	1.37
1641--1695	19	2.8	20	88	5	76	47	9	5	38	1.58
1723--1764	22	1.9	22	90	0	66	45	4	4	45	1.45
1690--1897	92	2.3	93	78	11	216	46	5	3	44	1.44
1821--1903	33	2.4	34	78	6	87	48	3	4	43	1.41
2011--2091	22	3.8	22	80	8	87	46	9	4	38	1.59
2040--2116	22	3.6	22	83	8	88	48	9	5	37	1.57
2087--2191	24	4.2	24	83	9	115	42	5	6	44	1.54
2156--2494	18	18.1	18	62	26	59	45	7	3	43	1.49
2152--2493	20	17.0	20	67	19	94	45	7	3	43	1.49
2175--2243	27	2.6	27	86	4	77	40	8	4	46	1.55
2182--2252	27	2.7	27	86	2	99	40	7	4	47	1.50
2230--2298	32	2.2	32	82	7	79	46	5	2	44	1.42
2111--2539	223	2.0	212	89	8	648	44	6	4	43	1.52
2334--2414	24	3.2	24	78	13	76	41	6	7	44	1.57
2391--2467	9	9.2	8	71	20	52	44	6	2	46	1.43
2168--2467	2	144.0	2	63	24	54	44	6	4	44	1.48
2168--2467	7	48.0	6	65	22	54	44	6	4	44	1.48
2542--2599	27	2.1	27	93	0	98	39	3	8	48	1.51
2589--2633	15	3.1	15	81	15	58	42	6	0	51	1.28
3296--3361	23	2.9	23	81	2	80	30	25	18	25	1.98
3480--3556	34	2.2	35	93	4	129	28	19	11	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9282--9319	16	2.4	16	95	0	67	13	36	15	34	1.87
10167--10217	23	2.3	22	80	9	59	31	25	23	19	1.98
10174--10241	23	2.9	24	86	2	93	29	23	25	22	1.99
10174--10241	24	2.9	23	82	6	84	29	23	25	22	1.99
12290--12322	16	2.1	16	94	0	57	78	0	6	15	0.93
12800--12849	24	2.1	24	85	7	66	58	12	2	28	1.45
19727--19843	29	4.2	28	83	6	141	44	17	2	35	1.63
19727--19846	57	2.2	54	85	7	161	45	18	2	34	1.63
26015--26249	18	12.8	19	65	21	58	45	6	6	41	1.55
26085--26196	33	3.4	32	87	4	145	45	4	7	42	1.51
26137--26291	51	3.0	51	92	0	247	44	5	5	43	1.52
26188--26252	33	1.9	35	90	6	107	43	6	7	43	1.58
26086--26265	18	10.6	18	70	16	98	45	4	6	43	1.50
26351--26483	61	2.2	61	86	0	185	51	6	9	33	1.60
27333--27459	31	4.1	31	86	0	182	37	18	18	25	1.94
30790--30916	31	4.1	31	87	0	182	37	18	17	26	1.92
32580--32893	103	3.1	102	82	6	350	32	28	5	34	1.80
32580--32905	102	3.2	102	81	5	363	31	28	5	34	1.81
33093--33173	6	13.5	6	74	10	67	46	41	3	7	1.49
33085--33122	18	2.1	18	85	9	51	42	44	2	10	1.52
33093--33173	24	3.4	24	77	14	87	46	41	3	7	1.49
33125--33183	18	3.3	17	76	9	55	42	44	5	8	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33213--33267	18	3.1	18	83	0	65	43	36	5	14	1.69
33222--33272	24	2.1	24	88	0	75	47	39	3	9	1.55
33222--33272	12	4.2	12	79	0	57	47	39	3	9	1.55
35989--36043	23	2.4	23	93	0	92	23	9	27	40	1.85
41559--41628	20	3.5	20	98	0	131	38	14	24	22	1.91
42265--42351	23	3.8	23	95	0	156	37	25	24	12	1.90
42278--42339	13	5.2	13	67	21	55	35	25	24	14	1.93
42589--42626	3	12.7	3	94	0	67	2	34	0	63	1.09
43717--43790	29	2.5	29	95	2	130	44	14	24	16	1.85
44769--44820	21	2.5	21	78	12	61	36	21	13	28	1.91
48150--48200	2	26.0	2	96	4	95	49	0	0	50	1.00
64613--64645	15	2.2	15	94	0	57	45	0	0	54	0.99
64998--65072	37	2.0	37	82	10	91	50	4	1	44	1.29
70090--70134	2	22.5	2	100	0	90	48	0	0	51	1.00
77122--77148	4	6.8	4	100	0	54	77	0	0	22	0.76
77900--77942	21	2.0	21	86	0	59	32	30	23	13	1.93
77971--78015	22	2.0	22	86	4	63	31	33	26	8	1.87
79242--79310	23	3.0	23	85	6	86	20	26	24	28	1.99
81480--81538	29	2.0	29	87	6	84	69	1	3	25	1.13
81917--81986	30	2.3	30	100	0	140	48	14	17	20	1.81
82990--83042	26	2.0	26	96	0	97	30	5	22	41	1.77
83595--83648	3	17.7	3	77	11	56	61	1	1	35	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96845--96878	17	2.1	16	88	5	50	38	0	5	55	1.24
128870--128901	16	1.9	16	93	6	55	12	18	9	59	1.59
137485--137512	2	14.0	2	100	0	56	50	0	0	50	1.00
141861--141893	11	3.0	11	95	0	57	33	3	0	63	1.10
141957--142151	97	2.0	97	95	0	354	26	27	13	32	1.93
147542--147622	28	2.9	28	75	10	76	39	18	7	34	1.79
148709--148748	19	2.1	19	100	0	80	27	35	10	27	1.89
153631--153711	42	2.0	42	92	2	137	41	2	17	38	1.63
157799--157852	24	2.2	24	78	12	58	57	3	1	37	1.27

Tables:   1

The End!