genome.fa.s7366.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007366.1 Hibiscus syriacus cultivar Beakdansim tig00019759_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  142436

Tables:   1   

This is table  1  of  1  ( 104 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
183--222	2	19.0	2	90	10	62	47	2	2	47	1.29
208--276	35	1.9	37	82	11	90	46	2	1	49	1.25
210--297	36	2.6	35	81	10	103	47	3	1	47	1.26
278--510	39	6.1	38	81	8	244	44	5	4	46	1.45
628--876	42	6.1	40	77	13	204	26	19	5	48	1.70
647--876	85	2.8	82	74	14	218	26	19	5	49	1.69
4793--4872	19	3.9	19	83	11	88	80	7	5	7	1.03
4881--4918	20	2.0	20	89	5	60	76	5	0	18	0.97
4810--4923	12	8.5	13	74	15	63	78	5	4	12	1.07
9259--9300	12	3.5	12	90	0	66	35	16	30	16	1.92
9555--9597	23	1.9	23	86	13	63	25	6	4	62	1.40
10645--10683	15	2.6	15	100	0	78	35	12	25	25	1.92
11455--11525	30	2.3	31	78	11	74	25	4	0	70	1.05
11494--11917	43	10.1	42	76	16	303	25	17	4	52	1.64
11441--11565	44	2.9	43	74	11	130	24	7	4	64	1.36
11597--11730	40	3.3	40	84	7	128	27	18	5	47	1.72
11637--11918	87	3.3	86	80	10	316	24	20	4	50	1.68
11635--11939	130	2.4	126	82	10	354	25	19	4	50	1.67
11570--11958	43	9.2	44	78	11	316	26	18	4	50	1.67
13125--13182	28	2.0	29	90	6	91	63	0	10	25	1.26
16362--16464	39	2.6	39	86	4	143	25	13	9	51	1.71
16717--16780	22	3.0	21	75	4	74	26	3	3	67	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16702--16818	43	2.7	43	81	6	132	23	7	3	64	1.35
16827--17218	42	9.2	42	76	10	282	26	18	6	47	1.72
16827--17239	85	4.9	83	74	12	290	27	18	6	47	1.72
16872--17258	212	1.8	212	92	2	661	26	19	5	47	1.72
17261--17361	43	2.4	43	81	5	125	27	19	5	46	1.73
24510--24565	28	2.0	28	96	0	103	41	14	8	35	1.77
28614--28683	34	2.1	34	100	0	140	54	5	5	34	1.48
28806--28907	41	2.5	41	87	3	136	25	16	8	49	1.75
29083--29114	17	1.9	16	93	6	55	31	15	0	53	1.43
30346--30410	30	2.2	30	83	5	78	23	7	6	63	1.44
30377--30764	42	9.3	42	75	14	297	25	19	5	50	1.68
30441--30764	42	7.6	43	80	9	308	25	19	5	49	1.69
30441--30764	85	3.8	85	78	10	322	25	19	5	49	1.69
32260--32332	36	2.0	36	100	0	146	49	10	6	32	1.65
35002--35057	28	2.0	28	96	0	103	41	16	7	35	1.75
38664--38712	17	2.6	19	84	15	59	55	0	0	44	0.99
38717--38780	25	2.5	26	75	15	60	56	1	3	39	1.25
39431--39462	17	1.9	16	93	6	55	31	15	0	53	1.43
40177--40213	19	1.9	19	88	0	56	35	29	13	21	1.92
40239--40332	20	4.6	19	75	10	62	27	22	21	28	1.99
40300--40410	41	2.7	41	88	2	134	31	24	21	22	1.98
40320--40394	21	3.6	21	78	10	100	30	25	22	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40341--40447	20	5.3	20	84	6	153	28	27	20	24	1.99
41268--41321	24	2.2	24	90	0	81	22	18	20	38	1.93
43791--43844	20	2.7	20	85	0	72	33	18	20	27	1.96
43850--43984	54	2.5	54	95	0	234	40	20	20	18	1.92
43884--44125	20	12.8	20	80	11	215	36	22	20	20	1.95
43791--44118	34	8.8	39	76	12	232	36	21	20	21	1.95
44176--44332	59	2.5	62	86	10	221	52	17	3	27	1.60
44210--44334	30	4.2	30	74	12	132	52	15	3	28	1.58
45711--45815	21	5.0	21	76	3	104	23	19	36	20	1.95
46297--46340	20	2.2	20	91	0	70	54	20	9	15	1.68
46331--46380	20	2.5	20	83	0	64	40	24	18	18	1.91
46460--46618	34	4.5	35	69	19	98	18	23	20	37	1.94
46431--46638	54	3.9	54	90	0	301	18	22	20	38	1.93
46407--46585	74	2.4	75	80	6	204	17	22	18	40	1.91
46405--46657	20	13.6	20	76	14	166	17	22	20	39	1.92
48515--48558	20	2.2	20	100	0	88	52	22	11	13	1.72
48586--48640	14	3.6	14	73	17	56	36	25	23	14	1.93
48566--48645	32	2.4	32	93	4	133	35	25	22	17	1.95
49006--49085	22	3.6	22	91	0	133	18	18	43	18	1.88
49248--49353	20	5.2	20	85	6	142	25	20	26	27	1.99
49248--49374	61	2.1	61	93	0	218	25	21	25	28	1.99
49362--49435	21	3.6	19	82	8	76	29	20	22	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49449--49495	19	2.4	19	82	3	58	25	14	29	29	1.95
49461--49497	19	1.9	19	94	0	65	21	16	29	32	1.95
49636--50041	42	9.7	43	74	13	321	25	17	5	51	1.66
49714--50041	85	3.9	84	77	10	301	25	18	5	50	1.68
49758--50089	170	2.0	170	78	4	357	26	18	5	49	1.69
53574--53634	31	2.0	31	93	0	104	19	22	11	45	1.82
54490--54558	34	2.0	34	100	0	138	40	14	15	28	1.87
63269--63401	60	2.2	60	79	4	142	34	15	18	32	1.91
66893--66953	13	4.8	13	70	22	58	60	19	9	9	1.56
66893--66964	23	2.9	25	81	10	85	62	19	8	9	1.51
67226--67271	14	3.1	14	87	6	65	52	15	15	17	1.76
68315--68354	21	1.9	21	84	0	53	30	0	12	57	1.36
68524--68580	15	3.6	15	75	13	60	43	10	12	33	1.76
68527--68561	18	1.9	18	94	0	61	40	8	11	40	1.72
68977--69031	13	4.2	13	75	13	58	49	10	3	36	1.56
69017--69115	33	3.0	33	92	1	155	46	15	6	32	1.70
71454--71499	12	3.6	12	81	16	56	17	19	17	45	1.85
71453--71492	15	2.9	14	85	14	57	20	17	15	47	1.83
71495--71533	13	3.0	13	85	7	53	51	15	15	17	1.77
80360--80674	149	2.1	149	92	2	526	25	18	21	34	1.96
80642--80686	23	2.0	23	86	0	63	20	26	26	26	1.99
83856--83919	31	2.1	31	91	5	103	32	7	18	40	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84298--84348	3	17.0	3	100	0	102	33	0	0	66	0.92
84604--84685	41	2.0	41	85	0	110	45	7	1	46	1.39
84768--84925	58	2.7	60	86	2	230	31	22	5	41	1.77
85027--85160	60	2.2	60	82	6	155	38	3	23	34	1.73
86851--86889	21	2.0	21	90	10	64	10	30	0	58	1.31
87155--87251	49	2.0	49	95	0	176	28	4	18	48	1.66
90203--90230	11	2.5	11	100	0	56	17	25	0	57	1.41
99010--99042	2	16.5	2	93	0	57	45	0	3	51	1.16
101813--101868	24	2.3	24	90	0	85	21	30	21	26	1.98
103639--103679	15	2.8	14	85	10	55	65	2	12	19	1.36
116019--116102	40	2.1	39	86	2	114	25	16	25	33	1.96
120700--120783	40	2.1	39	86	2	114	22	15	26	35	1.94
122723--122771	24	2.0	25	84	8	64	38	6	0	55	1.25
129966--130022	29	2.0	29	96	0	105	45	14	12	28	1.80
134629--134655	8	3.4	8	100	0	54	51	37	0	11	1.37
135988--136070	25	3.2	25	64	29	64	30	9	15	44	1.79

Tables:   1

The End!