Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007367.1 Hibiscus syriacus cultivar Beakdansim tig00019760_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  133275

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12700--12741
21
2.0
21
85
0
57
26
0
4
69
1.08
12726--12777
16
3.1
15
79
17
50
42
1
0
55
1.10
19976--20110
15
8.5
15
72
17
103
42
0
5
51
1.24
19953--20136
94
2.0
93
84
10
241
42
0
7
50
1.34
19976--20136
47
3.3
47
92
4
250
42
0
6
50
1.29
20113--20198
22
3.7
22
72
17
84
33
0
13
52
1.41
20117--20279
26
6.3
26
65
20
83
34
0
11
53
1.37
20112--20229
48
2.5
48
98
0
227
33
0
15
51
1.43
20143--20216
22
3.2
22
67
14
67
31
0
16
52
1.44
20308--20364
29
1.9
30
92
3
98
40
8
7
43
1.63
25970--26102
59
2.3
59
80
11
166
34
13
16
35
1.88
26259--26492
111
2.1
111
97
1
443
32
19
28
20
1.97
31269--31301
16
2.1
16
100
0
66
18
24
39
18
1.92
31285--31354
29
2.4
29
100
0
140
11
25
42
20
1.85
34039--34105
23
2.9
23
81
0
89
29
23
26
19
1.98
36562--36599
2
19.0
2
100
0
76
50
50
0
0
1.00
37656--37687
16
2.0
16
100
0
64
31
31
12
25
1.92
40648--40717
37
2.0
35
91
8
115
28
17
12
41
1.86
47154--47236
30
2.7
30
94
1
139
49
7
19
24
1.73
59070--59101
16
1.9
17
93
6
57
34
31
6
28
1.82
59593--59624
16
1.9
17
93
6
57
34
21
6
37
1.79
72872--72921
18
2.7
18
84
3
64
38
14
4
44
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
76106--76142
18
2.1
18
100
0
74
40
27
10
21
1.86
82196--82224
3
9.7
3
100
0
58
34
0
65
0
0.93
96163--96189
2
13.5
2
100
0
54
0
48
0
51
1.00
99236--99400
41
4.0
41
75
7
158
18
20
20
40
1.92
99262--99373
20
5.6
20
80
2
134
15
21
21
41
1.89
99245--99409
81
2.0
79
81
9
190
18
20
21
40
1.92
99668--99714
19
2.5
19
96
0
85
42
19
19
19
1.89
99754--99807
21
2.6
21
96
0
99
29
27
16
25
1.97
106064--106157
23
4.0
23
83
4
107
48
14
20
15
1.80
106074--106170
24
4.1
24
82
1
70
49
13
19
17
1.79
106761--106799
20
2.0
20
84
0
51
33
7
23
35
1.83
107417--107508
31
3.0
31
81
0
103
38
17
15
29
1.90
109792--109879
32
2.8
32
70
15
85
50
2
2
45
1.27
110989--111402
206
2.0
206
99
0
819
44
15
9
30
1.78
117311--117364
23
2.3
23
96
0
99
18
11
24
46
1.81
119219--119250
15
2.0
17
88
11
50
43
6
12
37
1.68
119655--119839
32
5.9
31
84
5
230
28
17
19
34
1.95
119655--119837
96
1.9
94
87
4
269
28
18
19
34
1.95

Tables:   1

The End!