genome.fa.s7369.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007369.1 Hibiscus syriacus cultivar Beakdansim tig00019763_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  139234

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30354--30387	12	2.8	12	90	4	50	58	26	2	11	1.47
30859--30916	20	2.9	20	68	0	53	34	29	12	24	1.91
32788--32899	24	4.7	24	88	4	163	40	20	15	24	1.91
35465--35522	18	3.5	18	71	22	63	15	17	50	17	1.79
35453--35524	31	2.3	31	95	0	126	16	18	47	18	1.83
35443--35518	13	5.5	13	75	14	71	17	19	44	18	1.87
35443--35518	31	2.7	26	76	18	80	17	19	44	18	1.87
37587--37701	24	4.8	24	91	4	178	40	20	16	23	1.91
37563--37718	48	3.2	48	81	7	138	43	19	13	23	1.86
37567--37718	72	2.1	71	79	8	173	43	19	13	23	1.87
40174--40236	13	4.5	13	78	18	72	15	22	46	15	1.84
40182--40222	18	2.3	18	95	0	73	12	21	48	17	1.79
40174--40242	31	2.2	31	94	0	120	15	21	46	15	1.84
46175--46253	33	2.4	33	95	0	140	21	12	24	41	1.87
46175--46269	33	3.0	32	87	4	113	21	12	24	42	1.87
58169--58250	29	2.8	29	94	1	137	32	14	9	42	1.79
59539--59568	15	2.0	15	93	0	51	56	23	0	20	1.42
62933--63014	29	2.8	29	94	1	137	32	14	9	42	1.79
71077--71135	29	2.0	29	96	0	109	50	11	13	23	1.74
78242--78307	32	2.1	32	94	5	116	22	15	19	42	1.88
81576--81613	15	2.3	17	78	21	53	28	34	26	10	1.90
81582--81616	15	2.3	15	100	0	70	28	34	22	14	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88479--88512	15	2.3	15	89	0	50	32	26	23	17	1.97
94588--94635	24	2.0	24	95	0	87	33	8	31	27	1.86
119718--119747	13	2.3	13	100	0	60	63	0	36	0	0.95
123468--123501	2	17.0	2	100	0	68	50	0	0	50	1.00
123762--123841	6	13.2	6	72	15	58	78	1	16	3	0.95
123760--123843	18	4.6	18	74	12	82	78	1	16	3	0.95
123739--123830	31	2.8	33	77	12	93	75	2	18	4	1.08
123757--123832	33	2.3	33	80	17	88	76	2	17	3	1.06
130059--130103	22	2.0	22	100	0	90	28	26	17	26	1.98
133207--133274	10	7.1	9	79	11	64	27	30	26	14	1.95
133213--133264	19	2.7	19	91	8	79	26	32	25	15	1.95
133232--133296	20	3.3	20	81	10	64	33	29	23	13	1.93
135011--135051	18	2.2	19	86	4	57	26	39	19	14	1.90
136191--136267	28	2.8	28	80	2	93	35	32	6	25	1.82
137538--138647	54	20.6	55	79	10	772	33	9	16	40	1.81
137538--138334	110	7.3	107	79	9	690	33	10	15	41	1.81
138318--138694	51	7.2	53	81	10	370	33	9	17	39	1.82
138061--138700	103	6.1	100	76	13	436	33	10	16	39	1.84
138275--138685	206	2.0	207	81	9	491	33	9	16	39	1.82

Tables:   1

The End!