genome.fa.s7370.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007370.1 Hibiscus syriacus cultivar Beakdansim tig00019778_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114000

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1741--1777	2	18.5	2	100	0	74	48	0	0	51	1.00
2203--2249	20	2.3	20	100	0	94	46	8	23	21	1.78
2203--2259	20	2.9	19	92	5	71	47	8	24	19	1.77
2406--2472	35	1.9	35	87	6	100	47	4	0	47	1.22
3003--3028	12	2.2	12	100	0	52	26	0	19	53	1.45
3026--3131	52	2.0	53	83	5	135	39	2	16	41	1.62
3309--3588	140	2.0	140	85	1	382	30	27	11	30	1.92
3543--3594	27	1.9	27	84	0	68	40	26	7	25	1.82
5470--5499	14	2.1	14	93	0	51	56	16	13	13	1.67
5572--5619	22	2.3	19	77	19	51	27	2	8	62	1.35
5577--5621	22	2.0	23	87	8	67	31	2	6	60	1.35
15719--15763	22	2.0	23	86	4	65	46	8	8	35	1.66
25310--25379	3	23.0	3	83	13	90	35	0	0	64	0.94
26937--27054	30	3.9	30	80	3	130	16	16	9	58	1.62
27189--27233	23	2.0	22	82	4	54	31	0	13	55	1.38
27585--27623	19	2.1	19	86	13	55	58	5	5	30	1.41
28749--28774	7	3.7	7	100	0	52	23	30	30	15	1.95
28757--28816	25	2.5	24	89	5	93	16	23	40	20	1.91
28789--28850	17	3.5	17	88	4	88	17	22	41	17	1.90
34526--34574	21	2.3	21	86	13	66	57	4	4	34	1.37
36632--36658	2	13.5	2	100	0	54	51	0	0	48	1.00
53643--53688	22	2.0	22	83	12	56	52	13	2	32	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62492--62523	6	5.3	6	92	0	55	50	15	31	3	1.60
74642--74694	14	3.9	14	76	11	56	47	24	0	28	1.52
74913--74991	32	2.4	34	72	8	83	51	2	3	41	1.33
77882--77922	20	2.0	20	100	0	82	24	14	14	46	1.82
86590--86937	4	88.2	4	92	2	490	24	4	25	45	1.73
111222--111295	37	2.0	36	84	7	96	48	4	0	47	1.20
111217--111297	38	2.2	37	80	13	94	50	3	0	45	1.19
112182--112214	15	2.2	15	94	0	57	24	54	6	15	1.63

Tables:   1

The End!