genome.fa.s7371.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007371.1 Hibiscus syriacus cultivar Beakdansim tig00019787_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  128172

Tables:   1   

This is table  1  of  1  ( 91 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4617--4641	4	6.2	4	100	0	50	24	0	0	76	0.80
5562--5598	17	2.1	18	90	5	58	40	2	2	54	1.29
5558--5602	18	2.4	19	82	17	58	40	2	2	55	1.24
12147--12180	16	2.2	15	89	5	50	73	0	8	17	1.08
22373--22406	17	2.1	16	88	5	50	76	0	8	14	1.01
25384--25412	2	14.5	2	100	0	58	48	0	0	51	1.00
25686--25765	31	2.5	31	71	13	83	21	18	20	40	1.92
29449--29492	14	3.3	14	84	12	65	31	13	22	31	1.93
29449--29492	13	3.3	13	81	12	54	31	13	22	31	1.93
29745--29789	2	22.5	2	100	0	90	51	0	0	48	1.00
38874--38962	44	2.0	44	86	0	124	43	14	16	24	1.86
40315--40383	2	34.5	2	100	0	138	50	0	0	49	1.00
40676--40725	19	2.6	19	93	0	82	22	12	32	34	1.90
43224--43319	40	2.4	40	89	1	149	41	4	15	38	1.67
43307--43339	2	17.0	2	93	6	59	48	0	0	51	1.00
44968--45060	21	4.5	21	75	4	91	40	17	24	17	1.90
44968--45060	41	2.3	41	98	0	177	40	17	24	17	1.90
45046--45123	41	1.9	41	86	5	113	38	21	15	24	1.92
45091--45142	20	2.6	20	93	0	86	26	28	19	25	1.98
45717--45881	19	9.1	19	72	15	125	12	21	22	43	1.85
45722--45798	39	2.0	39	84	5	102	9	18	25	46	1.78
45770--45856	33	2.6	33	92	0	138	11	25	25	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47881--48003	42	2.9	42	80	2	122	22	36	17	22	1.95
47937--48003	21	3.2	21	66	6	55	23	35	20	19	1.95
49357--49392	14	2.6	14	95	0	63	30	0	25	44	1.54
49552--49702	19	8.7	19	64	21	80	14	22	20	42	1.88
49556--49682	33	3.9	32	86	8	184	14	22	19	43	1.87
49549--49681	66	2.0	66	95	0	239	15	22	19	42	1.89
51853--51877	12	2.1	12	100	0	50	0	28	0	72	0.86
52052--52105	24	2.2	24	90	0	81	38	20	16	24	1.92
53109--53166	20	2.9	20	94	0	98	37	22	22	17	1.93
53185--53338	19	8.6	19	85	11	211	12	22	18	46	1.83
53185--53338	52	2.9	52	92	4	236	12	22	18	46	1.83
55331--55397	19	3.5	19	83	4	89	37	23	23	14	1.93
55386--55443	14	3.9	14	79	16	71	48	25	17	8	1.75
55370--55448	32	2.4	33	95	2	142	46	24	18	10	1.80
55464--55556	19	5.1	19	73	15	70	13	20	23	41	1.88
55503--55556	20	2.8	19	86	5	72	16	24	24	35	1.95
56029--56073	18	2.5	18	85	0	63	11	15	46	26	1.79
57584--57627	22	2.0	22	100	0	88	18	13	45	22	1.84
57795--57908	20	5.7	20	75	10	81	26	16	23	33	1.96
57897--57989	20	4.5	21	78	4	100	17	24	18	39	1.91
57836--57970	41	3.3	41	83	4	139	20	20	20	37	1.94
57897--57989	41	2.3	41	100	0	186	17	24	18	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58216--58257	6	7.0	6	100	0	84	0	66	0	33	0.92
59994--60159	60	2.8	60	78	7	167	40	6	21	31	1.78
64074--64130	29	2.0	29	86	6	80	42	3	3	50	1.36
64675--64726	15	3.2	17	72	22	58	36	21	0	42	1.53
64967--65045	30	2.7	30	86	5	99	51	12	12	22	1.73
73784--73816	15	2.1	16	88	5	50	33	6	0	60	1.21
73833--73894	11	5.9	10	83	9	70	67	3	4	24	1.25
73833--73893	21	2.9	21	82	7	61	68	3	4	22	1.23
73930--73986	28	2.0	29	83	10	73	56	0	0	43	0.99
78135--78171	12	3.1	12	100	0	74	43	0	40	16	1.48
81920--81976	2	28.5	2	100	0	114	50	0	0	49	1.00
83322--83357	18	2.0	18	88	0	54	30	16	0	52	1.44
84360--84404	3	15.0	3	100	0	90	66	0	0	33	0.92
89386--89412	2	13.5	2	100	0	54	51	0	0	48	1.00
89776--89822	2	23.5	2	100	0	94	48	0	0	51	1.00
101486--101532	21	2.2	21	96	0	85	68	10	8	12	1.40
104116--104142	3	9.0	3	100	0	54	0	0	33	66	0.92
108473--108518	21	2.1	22	84	4	58	43	0	0	56	0.99
110254--110284	16	1.9	16	93	0	53	48	0	0	51	1.00
111080--111162	40	2.2	36	83	12	96	44	1	3	50	1.27
113168--113257	32	2.8	33	86	6	123	46	3	1	48	1.25
113170--113293	32	3.9	32	78	8	103	46	6	2	44	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
113169--113293	64	2.0	64	81	10	150	46	6	2	44	1.42
122416--122445	15	2.0	15	93	0	51	63	0	16	20	1.31
122534--122676	4	34.8	4	69	15	51	72	0	4	23	1.07
122534--122595	21	3.0	21	77	13	65	75	1	6	16	1.08
122555--122643	25	3.7	23	73	18	65	74	1	4	20	1.06
122534--122645	30	3.7	29	77	20	88	75	0	4	19	1.03
122576--122662	38	2.3	38	80	13	90	72	1	2	24	1.03
122576--122677	32	3.3	29	78	15	98	71	0	1	25	1.02
122589--122727	43	3.5	39	80	13	140	67	1	2	28	1.11
122723--122783	23	2.8	21	74	16	54	67	4	6	21	1.33
123086--123187	34	2.9	36	89	7	172	27	14	13	44	1.83
123734--124188	105	4.3	105	88	1	597	22	19	26	32	1.97
124749--124949	68	3.0	67	80	5	219	36	9	22	31	1.86
124756--124975	65	3.3	67	79	7	189	37	9	21	31	1.85
124925--125203	36	8.0	35	76	13	254	41	13	18	25	1.88
124873--125177	138	2.2	137	84	4	384	40	12	19	27	1.88
124961--125149	102	1.9	102	89	2	299	41	13	18	26	1.87
125062--125199	70	1.9	72	91	5	228	38	14	20	26	1.91
126098--126146	22	2.2	22	96	0	89	26	12	24	36	1.91
126758--126817	20	2.9	21	80	7	61	1	13	6	78	1.02
126791--126834	8	5.7	7	84	12	52	0	15	2	81	0.78
126755--126834	7	10.9	7	72	15	54	1	13	5	80	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126778--126844	15	4.4	15	77	7	64	0	14	5	79	0.92
126791--126843	23	2.2	24	83	9	65	0	16	3	79	0.88
128011--128041	15	2.1	15	93	0	53	58	12	16	12	1.64

Tables:   1

The End!