genome.fa.s7372.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007372.1 Hibiscus syriacus cultivar Beakdansim tig00019788_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51704

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
786--946	63	2.5	64	83	4	218	27	16	27	29	1.97
894--944	19	2.7	19	85	8	70	25	15	35	23	1.94
789--991	63	3.2	64	81	12	163	27	17	26	28	1.98
1527--1786	54	4.8	55	86	5	379	26	18	21	33	1.97
1527--1773	106	2.3	106	91	4	397	27	18	20	34	1.96
5133--5186	23	2.3	23	81	6	65	31	0	1	66	1.02
6918--6958	4	10.5	4	89	5	66	26	2	21	48	1.63
6918--6954	19	1.9	19	94	0	65	27	2	21	48	1.63
11932--11970	17	2.2	18	90	4	62	46	2	0	51	1.14
20382--20414	12	2.8	12	90	0	57	39	9	0	51	1.34
23891--23950	8	7.1	8	78	14	50	81	0	10	8	0.87
23891--23955	12	5.7	11	76	10	51	81	0	10	7	0.87
23895--23965	37	1.9	36	83	16	92	80	0	8	11	0.91
25502--25680	41	4.2	41	77	9	189	30	20	21	27	1.98
25345--25680	128	2.6	130	81	9	402	27	21	21	29	1.98
25256--25860	130	4.7	132	77	7	337	30	20	20	28	1.97
26055--26112	13	4.8	12	72	21	50	18	3	1	75	1.03
30378--30432	3	18.0	3	87	7	76	34	1	0	63	1.05
32554--32588	18	1.9	18	88	0	52	42	20	5	31	1.75
33866--33903	20	1.9	19	89	5	58	28	26	15	28	1.96
33805--34230	196	2.2	196	90	0	656	31	17	18	33	1.94
34001--34897	257	3.5	255	87	2	1169	32	15	17	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33607--34488	453	1.9	453	87	1	1304	31	16	18	34	1.93
34580--34676	42	2.3	41	83	1	122	23	23	20	31	1.98
34948--35013	3	21.3	3	79	11	71	33	0	1	65	1.02
42943--43030	24	3.7	24	90	4	135	55	22	10	11	1.65
42947--43045	38	2.6	39	77	9	105	55	23	10	11	1.65
42952--43045	14	7.3	14	75	18	78	55	23	10	10	1.65

Tables:   1

The End!