genome.fa.s7374.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007374.1 Hibiscus syriacus cultivar Beakdansim tig00019791_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77085

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1744--1788	3	15.3	3	90	4	74	62	0	2	35	1.08
2903--2936	5	6.8	5	87	12	52	20	58	20	0	1.39
9159--9297	72	2.0	70	92	2	233	16	15	20	47	1.83
9229--9337	57	1.9	57	96	0	200	17	20	16	45	1.85
9300--9434	70	1.9	70	93	0	234	26	20	10	42	1.84
12835--12939	37	2.8	37	82	0	120	40	13	13	32	1.83
13406--13500	21	4.4	21	71	16	70	33	5	2	58	1.32
13539--13577	2	19.5	2	100	0	78	48	0	0	51	1.00
13674--13743	29	2.4	29	75	15	74	21	0	8	70	1.14
13792--13842	4	13.0	4	80	12	52	29	1	0	68	1.00
13793--13896	17	6.1	17	75	12	63	20	6	0	73	1.06
13862--13897	8	4.4	8	93	6	63	11	13	0	75	1.06
15512--15556	2	23.0	2	95	4	83	48	0	0	51	1.00
20624--20667	19	2.3	19	88	0	61	27	29	20	22	1.99
20724--20799	20	3.8	20	80	13	75	32	25	14	27	1.94
20725--20803	41	2.0	40	87	7	115	31	24	13	30	1.94
20868--20930	27	2.3	27	94	0	117	39	28	4	26	1.76
20999--21038	16	2.5	16	83	0	53	27	5	0	67	1.11
21782--21835	24	2.2	24	90	0	81	18	18	20	42	1.89
24071--24106	18	2.0	18	88	0	54	55	22	2	19	1.56
25901--25966	21	3.1	21	80	0	87	22	18	37	21	1.94
25886--25966	42	1.9	42	94	0	144	22	18	37	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26213--26350	63	2.2	64	82	2	163	32	34	13	19	1.90
26193--26353	21	7.7	21	67	8	85	34	32	13	19	1.90
27924--27961	20	1.9	20	94	0	67	15	13	18	52	1.74
27925--27968	20	2.2	20	87	0	61	18	13	18	50	1.79
28287--28328	22	2.0	20	86	9	57	26	14	35	23	1.93
28456--28493	20	2.0	20	84	5	51	44	13	15	26	1.83
28464--28506	19	2.2	20	87	4	61	41	16	18	23	1.89
28519--28609	20	4.5	20	75	8	94	26	16	20	36	1.94
28555--28615	21	3.0	21	72	13	63	29	14	21	34	1.93
28519--28615	41	2.4	41	89	5	144	28	15	20	35	1.93
30809--30839	7	4.6	7	92	8	55	87	0	0	12	0.55
30808--30839	13	2.3	15	84	15	50	87	0	0	12	0.54
32600--32973	54	6.9	53	82	8	321	27	25	18	27	1.98
32600--32973	108	3.5	105	81	9	362	27	25	18	27	1.98
32600--32931	162	2.1	161	81	8	390	28	25	18	27	1.98
34309--34334	12	2.2	12	100	0	52	7	11	0	80	0.89
34438--34481	7	6.3	7	86	0	61	2	15	0	81	0.78
34403--34481	21	3.8	21	74	5	61	6	16	0	77	0.97
38146--38440	148	2.0	146	98	1	572	29	27	12	30	1.93
45830--45861	6	5.2	6	92	7	55	84	0	0	15	0.63
45829--45859	13	2.4	13	100	0	62	87	0	0	12	0.55
55630--55661	16	2.0	16	100	0	64	31	12	25	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73361--73393	17	2.0	17	88	5	50	21	3	42	33	1.68

Tables:   1

The End!