Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007377.1 Hibiscus syriacus cultivar Beakdansim tig00019812_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 121927
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.34
Found at i:3332 original size:55 final size:55
Alignment explanation
Indices: 3248--3478 Score: 331
Period size: 55 Copynumber: 4.2 Consensus size: 55
3238 TACACTATGC
* *
3248 GTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTTTGTATGGGCACTCTGT
1 GTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTTCGTATGGGCACTGTGT
* * * *
3303 GTGCAAAACTAAAAAATT-AGTAATAAGTTTATGAATTTCCGTATGGGTACTATGT
1 GTGCAAAACTAAGAAATTCA-TAATAAGTTTATGAATTTTCGTATGGGCACTGTGT
* *
3358 GTGCAAAAGTAAGAAATTCATAATAAGTTTATGAATTTTCGTATGGGCATTGTGT
1 GTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTTCGTATGGGCACTGTGT
* * *
3413 GTGTAAAACTAAGAAATTCATAATAAGTTTATTAATTTAT-GTATTGGCACTGTGT
1 GTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTT-TCGTATGGGCACTGTGT
3468 GTGCAAAACTA
1 GTGCAAAACTA
3479 TATATTTATA
Statistics
Matches: 156, Mismatches: 17, Indels: 6
0.87 0.09 0.03
Matches are distributed among these distances:
54 1 0.01
55 153 0.98
56 2 0.01
ACGTcount: A:0.36, C:0.09, G:0.19, T:0.36
Consensus pattern (55 bp):
GTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTTCGTATGGGCACTGTGT
Found at i:5584 original size:2 final size:2
Alignment explanation
Indices: 5577--5619 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
5567 ATGATGTCAA
5577 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
5619 A
1 A
5620 ACTTTTATGG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8977 original size:51 final size:51
Alignment explanation
Indices: 8824--8988 Score: 149
Period size: 52 Copynumber: 3.1 Consensus size: 51
8814 CTATGCGTTA
* * * *
8824 AAAACTAAGAAATTCATATCAAGTTTATGAATTTCCATATGGGCACTGTTTGC
1 AAAACTAAGAAATTCA-AT-AAGTTTATGAATTTTCATATGGACATTGTGTGC
* *
8877 AAAACTAAG-AATTCAAAATAACTTTATGAATTTGT-AT-GGGTAC-TGTGTGTGC
1 AAAACTAAGAAATTC--AATAAGTTTATGAATTT-TCATATGG-ACAT-TGTGTGC
* *
8929 TAAACTAAGAAATTCAATAAGTTTATGAATTTTCATATTGACATTGTGTGTGC
1 AAAACTAAGAAATTCAATAAGTTTATGAATTTTCATATGGACA-T-TGTGTGC
8982 AAAACTA
1 AAAACTA
8989 TAGATTTATA
Statistics
Matches: 91, Mismatches: 11, Indels: 20
0.75 0.09 0.16
Matches are distributed among these distances:
50 1 0.01
51 22 0.24
52 36 0.40
53 31 0.34
54 1 0.01
ACGTcount: A:0.38, C:0.12, G:0.16, T:0.35
Consensus pattern (51 bp):
AAAACTAAGAAATTCAATAAGTTTATGAATTTTCATATGGACATTGTGTGC
Found at i:8981 original size:53 final size:53
Alignment explanation
Indices: 8824--8988 Score: 187
Period size: 53 Copynumber: 3.1 Consensus size: 53
8814 CTATGCGTTA
*
8824 AAAACTAAGAAATTCATATCAAGTTTATGAATTTCCATATGGGCACTGT-T-TGC
1 AAAACTAAGAAATTCA-AT-AAGTTTATGAATTTTCATATGGGCACTGTGTGTGC
* * *
8877 AAAACTAAG-AATTCAAAATAACTTTATGAA-TTT-GTATGGGTACTGTGTGTGC
1 AAAACTAAGAAATTC--AATAAGTTTATGAATTTTCATATGGGCACTGTGTGTGC
* * * *
8929 TAAACTAAGAAATTCAATAAGTTTATGAATTTTCATATTGACATTGTGTGTGC
1 AAAACTAAGAAATTCAATAAGTTTATGAATTTTCATATGGGCACTGTGTGTGC
8982 AAAACTA
1 AAAACTA
8989 TAGATTTATA
Statistics
Matches: 93, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
50 11 0.12
51 16 0.17
52 29 0.31
53 36 0.39
54 1 0.01
ACGTcount: A:0.38, C:0.12, G:0.16, T:0.35
Consensus pattern (53 bp):
AAAACTAAGAAATTCAATAAGTTTATGAATTTTCATATGGGCACTGTGTGTGC
Found at i:10223 original size:20 final size:20
Alignment explanation
Indices: 10198--10241 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
10188 GATTTTATTG
10198 AGCCCGAAAGGACATCACTA
1 AGCCCGAAAGGACATCACTA
* *
10218 AGCCCGAAAGGACTTCACTG
1 AGCCCGAAAGGACATCACTA
10238 AGCC
1 AGCC
10242 AAACTCTTGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.34, C:0.32, G:0.23, T:0.11
Consensus pattern (20 bp):
AGCCCGAAAGGACATCACTA
Found at i:14765 original size:20 final size:20
Alignment explanation
Indices: 14740--14777 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
14730 GTCGTTTGGC
14740 CTTATGGTATCGATACTAAG
1 CTTATGGTATCGATACTAAG
14760 CTTATGGTATCGATACTA
1 CTTATGGTATCGATACTA
14778 CTATGTGTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (20 bp):
CTTATGGTATCGATACTAAG
Found at i:16606 original size:92 final size:93
Alignment explanation
Indices: 16233--16664 Score: 356
Period size: 93 Copynumber: 4.7 Consensus size: 93
16223 TTTTATAGCA
* ** * * * *
16233 TTGTTACATTAAT-GAATGGAAGTTTTAAC-AACACTGAAACGTATTTACTAAACCCTTTGATGT
1 TTGTTATATTAATAG-ATGGAAG-TTTAACTAACGTTGAAATGAATTAACTAAACACTTTGATGT
** * * *
16296 TTACAAAATAAATAGGTTAACTTATCCAAG
64 TTACGGACTAAAGAGGTTAACTTATCCATG
* ** * * * * * *
16326 TTGTTATATTGAGGGATGGATGATTGAA-TAGCGTTGAAATGTCA-TAACTAAATACGTTGATGT
1 TTGTTATATTAATAGATGGAAG-TTTAACTAACGTTGAAATG-AATTAACTAAACACTTTGATGT
* * *
16389 TTACAGACTAAAGAGGTAAACTTATCCAAG
64 TTACGGACTAAAGAGGTTAACTTATCCATG
* * * * *
16419 TTGTTATTTTGATAGATGGAAGTTTAAGTAATGTTGAAATGACTTAACTAAACACTTTGATGTTT
1 TTGTTATATTAATAGATGGAAGTTTAACTAACGTTGAAATGAATTAACTAAACACTTTGATGTTT
*
16484 ATGGACTAAAGA-GTTCAACTTATCCATG
66 ACGGACTAAAGAGGTT-AACTTATCCATG
* * * * **
16512 TTGTTATAATAATAGATGGTAGTTTGACTAGCGTTGAAATGAATTAAC-ATCCACTTTGATGTTT
1 TTGTTATATTAATAGATGGAAGTTTAACTAACGTTGAAATGAATTAACTAAACACTTTGATGTTT
* *
16576 AGGGACTAAGGAGGTTAACTTATCCATG
66 ACGGACTAAAGAGGTTAACTTATCCATG
* ** * * **
16604 TTGTTATATTAATGGATTAAAGTTTGAA-TAACATTTAAATGTTTTAACTAAACACTTTGAT
1 TTGTTATATTAATAGATGGAAGTTT-AACTAACGTTGAAATGAATTAACTAAACACTTTGAT
16665 TGATGCCATA
Statistics
Matches: 270, Mismatches: 60, Indels: 18
0.78 0.17 0.05
Matches are distributed among these distances:
92 77 0.29
93 191 0.71
94 2 0.01
ACGTcount: A:0.35, C:0.10, G:0.18, T:0.37
Consensus pattern (93 bp):
TTGTTATATTAATAGATGGAAGTTTAACTAACGTTGAAATGAATTAACTAAACACTTTGATGTTT
ACGGACTAAAGAGGTTAACTTATCCATG
Found at i:22994 original size:3 final size:3
Alignment explanation
Indices: 22986--23020 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
22976 ATTAATATCT
22986 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
23021 TATGCACATG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:26326 original size:47 final size:44
Alignment explanation
Indices: 26266--26383 Score: 146
Period size: 47 Copynumber: 2.6 Consensus size: 44
26256 CCCTTACCAT
*
26266 TTATTTCATAAGCTCGTAAGCTTATTTTACCAAAATACTTAACA
1 TTATTCCATAAGCTCGTAAGCTTATTTTACCAAAATACTTAACA
* * * **
26310 TTTAAATTCCGTAAGCTCGTAAGCTTATTTTACCCATATACTTGCCA
1 -TT--ATTCCATAAGCTCGTAAGCTTATTTTACCAAAATACTTAACA
*
26357 TTATTCCAAAAGCTCGTAAGCTTATTT
1 TTATTCCATAAGCTCGTAAGCTTATTT
26384 ATATGCTTAC
Statistics
Matches: 63, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
44 23 0.37
45 2 0.03
46 2 0.03
47 36 0.57
ACGTcount: A:0.31, C:0.20, G:0.09, T:0.39
Consensus pattern (44 bp):
TTATTCCATAAGCTCGTAAGCTTATTTTACCAAAATACTTAACA
Found at i:26617 original size:59 final size:58
Alignment explanation
Indices: 26484--26620 Score: 166
Period size: 59 Copynumber: 2.3 Consensus size: 58
26474 ATAAGCACCG
* * **
26484 TAGTGCTATCCCGAATATGACACATAAGGTCGTGTCCACAATCTGTACTAGGTATCCTT
1 TAGTG-TATCCCGAATATGACACATAAGGTCGTGCCCACAATATACACTAGGTATCCTT
* ** * *
26543 AAGTACAGTCTCGAATATGACACATAAGGTCGTGCCCACCATATACACTAGGTATCCTT
1 TAGTGTA-TCCCGAATATGACACATAAGGTCGTGCCCACAATATACACTAGGTATCCTT
26602 TAGTGTATTCCCGAATATG
1 TAGTGTA-TCCCGAATATG
26621 CAGCCTGCTG
Statistics
Matches: 63, Mismatches: 14, Indels: 2
0.80 0.18 0.03
Matches are distributed among these distances:
58 1 0.02
59 62 0.98
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.29
Consensus pattern (58 bp):
TAGTGTATCCCGAATATGACACATAAGGTCGTGCCCACAATATACACTAGGTATCCTT
Found at i:32922 original size:25 final size:25
Alignment explanation
Indices: 32893--32944 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
32883 CTCGGTTTAG
32893 TCCTAGTATCGGCTAAACCTGTAGC
1 TCCTAGTATCGGCTAAACCTGTAGC
32918 TCCTAGTATCGGCTAAACCTGTAGC
1 TCCTAGTATCGGCTAAACCTGTAGC
32943 TC
1 TC
32945 TGATACCAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (25 bp):
TCCTAGTATCGGCTAAACCTGTAGC
Found at i:33765 original size:44 final size:45
Alignment explanation
Indices: 33650--33770 Score: 156
Period size: 47 Copynumber: 2.7 Consensus size: 45
33640 AATCCGTTAC
33650 CATTTATTCCATAAGCTCGTAAGCTTATTTTACCAAAACACTTAA
1 CATTTATTCCATAAGCTCGTAAGCTTATTTTACCAAAACACTTAA
* * * **
33695 CATTTAAATTCCATAAGCTCGTAAGCTTATTTTACCCATATACTTGC
1 CATTT--ATTCCATAAGCTCGTAAGCTTATTTTACCAAAACACTTAA
33742 CA-TTATTCCA-AATGCTCGTAAGCTTATTT
1 CATTTATTCCATAA-GCTCGTAAGCTTATTT
33771 ATATTCTTAC
Statistics
Matches: 68, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
43 2 0.03
44 22 0.32
45 5 0.07
46 2 0.03
47 37 0.54
ACGTcount: A:0.31, C:0.22, G:0.08, T:0.38
Consensus pattern (45 bp):
CATTTATTCCATAAGCTCGTAAGCTTATTTTACCAAAACACTTAA
Found at i:33970 original size:59 final size:59
Alignment explanation
Indices: 33878--34006 Score: 177
Period size: 59 Copynumber: 2.2 Consensus size: 59
33868 CGTAGTGCTA
* * *
33878 TCCCGAATATGACACATAAGGTCGTGTCCACCATCTATACTAGATATCCTTAAGTACAG
1 TCCCGAATATGACACATAAGGTCGTGCCCACCATATACACTAGATATCCTTAAGTACAG
* * * ** *
33937 TCCCGAATATTACACATAAGGTCGTGCCCACCATATACACTAGGTATCCTTTAGTGTAT
1 TCCCGAATATGACACATAAGGTCGTGCCCACCATATACACTAGATATCCTTAAGTACAG
33996 TCCCGAATATG
1 TCCCGAATATG
34007 CAGCCTGCTG
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
59 60 1.00
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.29
Consensus pattern (59 bp):
TCCCGAATATGACACATAAGGTCGTGCCCACCATATACACTAGATATCCTTAAGTACAG
Found at i:40682 original size:19 final size:21
Alignment explanation
Indices: 40639--40682 Score: 51
Period size: 19 Copynumber: 2.3 Consensus size: 21
40629 GTTACCTCAT
40639 TAGTA-ACTGTATGACGTCTA
1 TAGTATACTGTATGACGTCTA
*
40659 T-GTATACT-TATGATGT-TA
1 TAGTATACTGTATGACGTCTA
40677 TAGTAT
1 TAGTAT
40683 TTACAATGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 5
0.78 0.04 0.19
Matches are distributed among these distances:
18 3 0.14
19 14 0.67
20 4 0.19
ACGTcount: A:0.30, C:0.09, G:0.18, T:0.43
Consensus pattern (21 bp):
TAGTATACTGTATGACGTCTA
Found at i:43422 original size:46 final size:46
Alignment explanation
Indices: 43365--43564 Score: 233
Period size: 46 Copynumber: 4.4 Consensus size: 46
43355 GCTCTAAAAT
*
43365 GAAT-CCATAAATGAAATGCATGAAATGATGCATTAAGGCATGAAA
1 GAATGCCATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAA
* *** * *
43410 GAATGCCATAAATAAAATTTGTGAATGGATGCATTAAGGTATGAAA
1 GAATGCCATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAA
* * *
43456 GGATGTCATAAATGAAATTCATGAAAGGATGCATTAAGGCATGAAA
1 GAATGCCATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAA
* * * *
43502 GGATGTCATAAATGAAATGCATTAAAGGATGTATTAAGGCATGAAA
1 GAATGCCATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAA
* *
43548 -AGAGGGCATAAATGAAA
1 GA-ATGCCATAAATGAAA
43565 GTAACGAATA
Statistics
Matches: 133, Mismatches: 20, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
45 4 0.03
46 129 0.97
ACGTcount: A:0.45, C:0.08, G:0.23, T:0.24
Consensus pattern (46 bp):
GAATGCCATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAA
Found at i:43459 original size:20 final size:20
Alignment explanation
Indices: 43431--43506 Score: 62
Period size: 20 Copynumber: 3.5 Consensus size: 20
43421 ATAAAATTTG
*
43431 TGAATGGATGCATTAAGGTA
1 TGAAAGGATGCATTAAGGTA
**
43451 TGAAAGGATGTCATAAATGAAATTCA
1 TGAAAGGATG-CAT---T-AAGGT-A
*
43477 TGAAAGGATGCATTAAGGCA
1 TGAAAGGATGCATTAAGGTA
43497 TGAAAGGATG
1 TGAAAGGATG
43507 TCATAAATGA
Statistics
Matches: 44, Mismatches: 6, Indels: 12
0.71 0.10 0.19
Matches are distributed among these distances:
20 20 0.45
21 5 0.11
22 1 0.02
24 1 0.02
25 6 0.14
26 11 0.25
ACGTcount: A:0.41, C:0.07, G:0.28, T:0.25
Consensus pattern (20 bp):
TGAAAGGATGCATTAAGGTA
Found at i:43528 original size:26 final size:26
Alignment explanation
Indices: 43450--43533 Score: 99
Period size: 26 Copynumber: 3.5 Consensus size: 26
43440 GCATTAAGGT
*
43450 ATGAAAGGATGTCATAAATGAAATTC
1 ATGAAAGGATGTCATAAATGAAATGC
*
43476 ATGAAAGGATG-CAT---T--AAGGC
1 ATGAAAGGATGTCATAAATGAAATGC
43496 ATGAAAGGATGTCATAAATGAAATGC
1 ATGAAAGGATGTCATAAATGAAATGC
*
43522 ATTAAAGGATGT
1 ATGAAAGGATGT
43534 ATTAAGGCAT
Statistics
Matches: 48, Mismatches: 4, Indels: 12
0.75 0.06 0.19
Matches are distributed among these distances:
20 14 0.29
21 3 0.06
22 1 0.02
24 1 0.02
25 3 0.06
26 26 0.54
ACGTcount: A:0.44, C:0.07, G:0.24, T:0.25
Consensus pattern (26 bp):
ATGAAAGGATGTCATAAATGAAATGC
Found at i:45840 original size:27 final size:27
Alignment explanation
Indices: 45802--45890 Score: 102
Period size: 27 Copynumber: 3.6 Consensus size: 27
45792 TGCATTATTG
45802 GCATGAAAGGATGCAATAACTAAAAAT
1 GCATGAAAGGATGCAATAACTAAAAAT
*
45829 GCATGAAAGGATGC-AT---T---AAG
1 GCATGAAAGGATGCAATAACTAAAAAT
* *
45849 GCATGAGAGGATGCCATAACTAAAAAT
1 GCATGAAAGGATGCAATAACTAAAAAT
45876 GCATGAAAGGATGCA
1 GCATGAAAGGATGCA
45891 TTCAGGCATG
Statistics
Matches: 50, Mismatches: 5, Indels: 14
0.72 0.07 0.20
Matches are distributed among these distances:
20 15 0.30
21 2 0.04
23 1 0.02
24 1 0.02
26 2 0.04
27 29 0.58
ACGTcount: A:0.45, C:0.12, G:0.25, T:0.18
Consensus pattern (27 bp):
GCATGAAAGGATGCAATAACTAAAAAT
Found at i:45852 original size:47 final size:47
Alignment explanation
Indices: 45792--45969 Score: 230
Period size: 47 Copynumber: 3.8 Consensus size: 47
45782 TGTATATGGG
* *
45792 TGCATTATTGGCATGAAAGGATGCAATAACTAAAAATGCATGAAAGGA
1 TGCATTA-AGGCATGAAAGGATGCCATAACTAAAAATGCATGAAAGGA
*
45840 TGCATTAAGGCATGAGAGGATGCCATAACTAAAAATGCATGAAAGGA
1 TGCATTAAGGCATGAAAGGATGCCATAACTAAAAATGCATGAAAGGA
* * * *
45887 TGCATTCAGGCATGAAAGGATGCCATAACTAAAAATACATTAAAAGA
1 TGCATTAAGGCATGAAAGGATGCCATAACTAAAAATGCATGAAAGGA
* ** * * *
45934 AGGTTTAAGGTATGAAATGATGCCATAAATAAAAAT
1 TGCATTAAGGCATGAAAGGATGCCATAACTAAAAAT
45970 TAATGAGCAA
Statistics
Matches: 115, Mismatches: 15, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
47 108 0.94
48 7 0.06
ACGTcount: A:0.45, C:0.11, G:0.21, T:0.22
Consensus pattern (47 bp):
TGCATTAAGGCATGAAAGGATGCCATAACTAAAAATGCATGAAAGGA
Found at i:45854 original size:20 final size:20
Alignment explanation
Indices: 45829--45909 Score: 72
Period size: 20 Copynumber: 3.7 Consensus size: 20
45819 AACTAAAAAT
45829 GCATGAAAGGATGCATTAAG
1 GCATGAAAGGATGCATTAAG
* *
45849 GCATGAGAGGATGCCATAACTAAAAAT
1 GCATGAAAGGATG-CAT---T---AAG
*
45876 GCATGAAAGGATGCATTCAG
1 GCATGAAAGGATGCATTAAG
45896 GCATGAAAGGATGC
1 GCATGAAAGGATGC
45910 CATAACTAAA
Statistics
Matches: 49, Mismatches: 5, Indels: 14
0.72 0.07 0.21
Matches are distributed among these distances:
20 27 0.55
21 3 0.06
23 1 0.02
24 1 0.02
26 3 0.06
27 14 0.29
ACGTcount: A:0.40, C:0.14, G:0.28, T:0.19
Consensus pattern (20 bp):
GCATGAAAGGATGCATTAAG
Found at i:47923 original size:15 final size:16
Alignment explanation
Indices: 47903--47932 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
47893 TCAAGAAGGA
47903 AATGAAAG-ATTTTAC
1 AATGAAAGTATTTTAC
47918 AATGAAAGTATTTTA
1 AATGAAAGTATTTTA
47933 TTTAACTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.47, C:0.03, G:0.13, T:0.37
Consensus pattern (16 bp):
AATGAAAGTATTTTAC
Found at i:48233 original size:2 final size:2
Alignment explanation
Indices: 48226--48256 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
48216 TGTCAGGAAG
48226 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
48257 GCTTTTATGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:49687 original size:21 final size:21
Alignment explanation
Indices: 49654--49759 Score: 146
Period size: 21 Copynumber: 5.1 Consensus size: 21
49644 TATATATATC
* *
49654 TAAT-AGCATTATAGATAAAA
1 TAATAAGCACTATAAATAAAA
49674 TAATAAGCACTATAAATAAAA
1 TAATAAGCACTATAAATAAAA
49695 TAATAAGCACTATAAATAAAA
1 TAATAAGCACTATAAATAAAA
**
49716 TAATAAGCACTATAAATATTA
1 TAATAAGCACTATAAATAAAA
49737 TAAT-AGCACTA-AGAATAAAA
1 TAATAAGCACTATA-AATAAAA
49757 TAA
1 TAA
49760 AATGAAGTGG
Statistics
Matches: 78, Mismatches: 6, Indels: 4
0.89 0.07 0.05
Matches are distributed among these distances:
19 1 0.01
20 19 0.24
21 58 0.74
ACGTcount: A:0.58, C:0.08, G:0.07, T:0.26
Consensus pattern (21 bp):
TAATAAGCACTATAAATAAAA
Found at i:50308 original size:29 final size:28
Alignment explanation
Indices: 50275--50496 Score: 210
Period size: 29 Copynumber: 7.6 Consensus size: 28
50265 TTTCGGTTAT
* * * *
50275 GGTGTTATTTTCGCAATTATTTTTAAAA
1 GGTGATATTTTGGTAATTATTGTTAAAA
* * * *
50303 GTGTGTTATTTTCGTATTTATTTTTAAAAA
1 G-GTGATATTTTGGTAATTATTGTT-AAAA
* * ** *
50333 GGATGTTATTTTCGTTGTTAATGTTAAAA
1 GG-TGATATTTTGGTAATTATTGTTAAAA
*
50362 CGGTGATATTTTGGCAATTATTGTTAAAA
1 -GGTGATATTTTGGTAATTATTGTTAAAA
*
50391 CAGTGATATTTTGGTAATTATTGTTAAAA
1 -GGTGATATTTTGGTAATTATTGTTAAAA
* *
50420 CGGTGCTATATTGGTAATTATTGTTAAAA
1 -GGTGATATTTTGGTAATTATTGTTAAAA
50449 TGGTGATATTTTGGTAATTATTGTTAAAA
1 -GGTGATATTTTGGTAATTATTGTTAAAA
*
50478 CAGTGATATTTTGGTAATT
1 -GGTGATATTTTGGTAATT
50497 GTTTAAAAAT
Statistics
Matches: 168, Mismatches: 22, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
28 1 0.01
29 142 0.85
30 25 0.15
ACGTcount: A:0.30, C:0.05, G:0.18, T:0.47
Consensus pattern (28 bp):
GGTGATATTTTGGTAATTATTGTTAAAA
Found at i:50422 original size:58 final size:58
Alignment explanation
Indices: 50354--50496 Score: 232
Period size: 58 Copynumber: 2.5 Consensus size: 58
50344 TCGTTGTTAA
*
50354 TGTTAAAACGGTGATATTTTGGCAATTATTGTTAAAACAGTGATATTTTGGTAATTAT
1 TGTTAAAACGGTGATATTTTGGTAATTATTGTTAAAACAGTGATATTTTGGTAATTAT
* * **
50412 TGTTAAAACGGTGCTATATTGGTAATTATTGTTAAAATGGTGATATTTTGGTAATTAT
1 TGTTAAAACGGTGATATTTTGGTAATTATTGTTAAAACAGTGATATTTTGGTAATTAT
*
50470 TGTTAAAACAGTGATATTTTGGTAATT
1 TGTTAAAACGGTGATATTTTGGTAATT
50497 GTTTAAAAAT
Statistics
Matches: 77, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
58 77 1.00
ACGTcount: A:0.32, C:0.04, G:0.20, T:0.44
Consensus pattern (58 bp):
TGTTAAAACGGTGATATTTTGGTAATTATTGTTAAAACAGTGATATTTTGGTAATTAT
Found at i:50471 original size:87 final size:88
Alignment explanation
Indices: 50273--50496 Score: 279
Period size: 87 Copynumber: 2.6 Consensus size: 88
50263 AATTTCGGTT
* * * ** * * * *
50273 ATGGTGTTATTTTCGCAATTATTTTTAAAAGTGTGTTATTTTCGTATTTATTTTTAAAAAGGATG
1 ATGGTGATATTTTGGCAATTATTGTTAAAACAGTGATATTTTGGTAATTATTGTTAAAAAGGATG
* * **
50338 TTATTTTCGTTGTTAATGTTAAA
66 CTATATTCGTAATTAATGTTAAA
* *
50361 ACGGTGATATTTTGGCAATTATTGTTAAAACAGTGATATTTTGGTAATTATTGTTAAAACGG-TG
1 ATGGTGATATTTTGGCAATTATTGTTAAAACAGTGATATTTTGGTAATTATTGTTAAAAAGGATG
* *
50425 CTATATTGGTAATTATTGTTAAA
66 CTATATTCGTAATTAATGTTAAA
*
50448 ATGGTGATATTTTGGTAATTATTGTTAAAACAGTGATATTTTGGTAATT
1 ATGGTGATATTTTGGCAATTATTGTTAAAACAGTGATATTTTGGTAATT
50497 GTTTAAAAAT
Statistics
Matches: 117, Mismatches: 19, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
87 66 0.56
88 51 0.44
ACGTcount: A:0.30, C:0.04, G:0.18, T:0.47
Consensus pattern (88 bp):
ATGGTGATATTTTGGCAATTATTGTTAAAACAGTGATATTTTGGTAATTATTGTTAAAAAGGATG
CTATATTCGTAATTAATGTTAAA
Found at i:50511 original size:25 final size:27
Alignment explanation
Indices: 50356--50526 Score: 168
Period size: 29 Copynumber: 6.1 Consensus size: 27
50346 GTTGTTAATG
* *
50356 TTAAAACGGTGATATTTTGGCAATTATT
1 TTAAAACAGTGATATTTTGGTAATT-TT
50384 GTTAAAACAGTGATATTTTGGTAATTATT
1 -TTAAAACAGTGATATTTTGGTAATT-TT
* * *
50413 GTTAAAACGGTGCTATATTGGTAATTATT
1 -TTAAAACAGTGATATTTTGGTAATT-TT
**
50442 GTTAAAATGGTGATATTTTGGTAATTATT
1 -TTAAAACAGTGATATTTTGGTAATT-TT
*
50471 GTTAAAACAGTGATATTTTGGTAATTGT
1 -TTAAAACAGTGATATTTTGGTAATTTT
50499 TTAAAA-A-TGATATTTCT-GTAATTTT
1 TTAAAACAGTGATATTT-TGGTAATTTT
50524 TTA
1 TTA
50527 CTGTGAACTA
Statistics
Matches: 129, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
25 18 0.14
26 2 0.02
27 6 0.05
28 1 0.01
29 102 0.79
ACGTcount: A:0.33, C:0.04, G:0.18, T:0.46
Consensus pattern (27 bp):
TTAAAACAGTGATATTTTGGTAATTTT
Found at i:57135 original size:21 final size:21
Alignment explanation
Indices: 57106--57211 Score: 112
Period size: 21 Copynumber: 5.1 Consensus size: 21
57096 AAAATATATC
57106 TAAT-AGCACTATAGATAAAA
1 TAATAAGCACTATAGATAAAA
*
57126 TAATAAGCACTATATATAAAA
1 TAATAAGCACTATAGATAAAA
* *
57147 TAAAAATCACTATA-ACTAAAA
1 TAATAAGCACTATAGA-TAAAA
* **
57168 TAATAAGCACTATAAATATTA
1 TAATAAGCACTATAGATAAAA
57189 TAAT-AGCACTA-AGAATAAAA
1 TAATAAGCACTATAG-ATAAAA
57209 TAA
1 TAA
57212 AATGAAGTGG
Statistics
Matches: 72, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
19 1 0.01
20 19 0.26
21 51 0.71
22 1 0.01
ACGTcount: A:0.58, C:0.10, G:0.06, T:0.26
Consensus pattern (21 bp):
TAATAAGCACTATAGATAAAA
Found at i:57761 original size:29 final size:28
Alignment explanation
Indices: 57728--57957 Score: 207
Period size: 29 Copynumber: 8.0 Consensus size: 28
57718 TTTCAGTTAT
* *
57728 GGTGTTATTTTTGTAATTATTTTTAAAA
1 GGTGTTATTTTGGTAATTATTGTTAAAA
* * *
57756 GTGTGTTATTTTCGTATTTATTTTTAAAAA
1 G-GTGTTATTTTGGTAATTATTGTT-AAAA
57786 GGGTGTTATTTCT--TAATTAATT-TTAAAA
1 -GGTGTTATTT-TGGTAATT-ATTGTTAAAA
* * *
57814 CGGTGATATTTTGGCAATTATTATTAAAA
1 -GGTGTTATTTTGGTAATTATTGTTAAAA
* *
57843 TAGTGATA-TTTGGTAATTATTGTTAAAA
1 -GGTGTTATTTTGGTAATTATTGTTAAAA
* *
57871 TGATGCTATTTTGGTAATTATTGTTAAAA
1 -GGTGTTATTTTGGTAATTATTGTTAAAA
* *
57900 CGATGCTATTTTGGTAATTATTGTTAAAA
1 -GGTGTTATTTTGGTAATTATTGTTAAAA
*
57929 CGGTGGTATTTTGGTAATTATTGTTAAAA
1 -GGTGTTATTTTGGTAATTATTGTTAAAA
57958 ACAATGATAT
Statistics
Matches: 177, Mismatches: 16, Indels: 17
0.84 0.08 0.08
Matches are distributed among these distances:
27 1 0.01
28 40 0.23
29 118 0.67
30 16 0.09
31 2 0.01
ACGTcount: A:0.31, C:0.03, G:0.17, T:0.49
Consensus pattern (28 bp):
GGTGTTATTTTGGTAATTATTGTTAAAA
Found at i:57898 original size:86 final size:88
Alignment explanation
Indices: 57799--57977 Score: 238
Period size: 86 Copynumber: 2.1 Consensus size: 88
57789 TGTTATTTCT
* *
57799 TAATTAATTTTAAAACGGTGATATTTTGGCAATTATTATTAAAATAGTGATA-TTTGGTAATTAT
1 TAATTAATTTTAAAACGATGATATTTTGGCAATTATTATTAAAACAGTGATATTTTGGTAATTAT
** *
57863 TGTT-AAAATGATGCTATTTTGG
66 TGTTAAAAACAATGATATTTTGG
* * * * *
57885 TAATT-ATTGTTAAAACGATGCTATTTTGGTAATTATTGTTAAAACGGTGGTATTTTGGTAATTA
1 TAATTAATT-TTAAAACGATGATATTTTGGCAATTATTATTAAAACAGTGATATTTTGGTAATTA
57949 TTGTTAAAAACAATGATATTTTGG
65 TTGTTAAAAACAATGATATTTTGG
57973 TAATT
1 TAATT
57978 GTTTAAAAAA
Statistics
Matches: 80, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
85 3 0.04
86 41 0.51
87 16 0.20
88 20 0.25
ACGTcount: A:0.34, C:0.04, G:0.17, T:0.45
Consensus pattern (88 bp):
TAATTAATTTTAAAACGATGATATTTTGGCAATTATTATTAAAACAGTGATATTTTGGTAATTAT
TGTTAAAAACAATGATATTTTGG
Found at i:57898 original size:115 final size:116
Alignment explanation
Indices: 57733--57977 Score: 284
Period size: 115 Copynumber: 2.1 Consensus size: 116
57723 GTTATGGTGT
* * * * * * * *
57733 TATTTTTGTAATTATTTTTAAAAGTGTGTTATTTTCGTATTTATTTTTAAAAAGGGTGTTATTTC
1 TATTTTGGTAATTATTGTTAAAAGTGTGCTATTTTCGTAATTATTGTT-AAAACGATGCTATTT-
* *
57798 T-TAATTAATT-TTAAAACGGTGATATTTTGGCAATTATTATT-AAAATAGTGA
64 TGTAATT-ATTGTTAAAACGGTGATATTTTGGCAATTATTATTAAAAACAATGA
*
57849 TA-TTTGGTAATTATTGTTAAAA-TGATGCTATTTTGGTAATTATTGTTAAAACGATGCTATTTT
1 TATTTTGGTAATTATTGTTAAAAGTG-TGCTATTTTCGTAATTATTGTTAAAACGATGCTATTTT
* * *
57912 GGTAATTATTGTTAAAACGGTGGTATTTTGGTAATTATTGTTAAAAACAATGA
65 -GTAATTATTGTTAAAACGGTGATATTTTGGCAATTATTATTAAAAACAATGA
57965 TATTTTGGTAATT
1 TATTTTGGTAATT
57978 GTTTAAAAAA
Statistics
Matches: 109, Mismatches: 14, Indels: 11
0.81 0.10 0.08
Matches are distributed among these distances:
113 1 0.01
114 17 0.16
115 69 0.63
116 12 0.11
117 10 0.09
ACGTcount: A:0.32, C:0.04, G:0.16, T:0.49
Consensus pattern (116 bp):
TATTTTGGTAATTATTGTTAAAAGTGTGCTATTTTCGTAATTATTGTTAAAACGATGCTATTTTG
TAATTATTGTTAAAACGGTGATATTTTGGCAATTATTATTAAAAACAATGA
Found at i:60648 original size:43 final size:45
Alignment explanation
Indices: 60546--60651 Score: 128
Period size: 50 Copynumber: 2.3 Consensus size: 45
60536 AGGATCAGAT
*
60546 TTATTATTTTATTAGGAATTAAGGTTGGGTTAAAACAATATTTTTAGTTA
1 TTATTATTTTATTAGGAATTAA-G--GGGTTAAAAC-A-ATGTTTAGTTA
60596 TTATTATTTTATTAGGAATT-A-GGGTTAAAAC-ATGTTTAGTTTA
1 TTATTATTTTATTAGGAATTAAGGGGTTAAAACAATGTTTAG-TTA
60639 TTATTATTTTATT
1 TTATTATTTTATT
60652 CAATAGTTAT
Statistics
Matches: 54, Mismatches: 1, Indels: 9
0.84 0.02 0.14
Matches are distributed among these distances:
42 7 0.13
43 16 0.30
45 10 0.19
49 1 0.02
50 20 0.37
ACGTcount: A:0.32, C:0.02, G:0.14, T:0.52
Consensus pattern (45 bp):
TTATTATTTTATTAGGAATTAAGGGGTTAAAACAATGTTTAGTTA
Found at i:65063 original size:43 final size:45
Alignment explanation
Indices: 64961--65066 Score: 128
Period size: 50 Copynumber: 2.3 Consensus size: 45
64951 AGGATCAGAT
*
64961 TTATTATTTTATTAGGAATTAAGGTTGGGTTAAAACAATATTTTTAGTTA
1 TTATTATTTTATTAGGAATTAA-G--GGGTTAAAAC-A-ATGTTTAGTTA
65011 TTATTATTTTATTAGGAATT-A-GGGTTAAAAC-ATGTTTAGTTTA
1 TTATTATTTTATTAGGAATTAAGGGGTTAAAACAATGTTTAG-TTA
65054 TTATTATTTTATT
1 TTATTATTTTATT
65067 CATTAGTTAT
Statistics
Matches: 54, Mismatches: 1, Indels: 9
0.84 0.02 0.14
Matches are distributed among these distances:
42 7 0.13
43 16 0.30
45 10 0.19
49 1 0.02
50 20 0.37
ACGTcount: A:0.32, C:0.02, G:0.14, T:0.52
Consensus pattern (45 bp):
TTATTATTTTATTAGGAATTAAGGGGTTAAAACAATGTTTAGTTA
Found at i:67762 original size:22 final size:22
Alignment explanation
Indices: 67727--67770 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
67717 AATATAGTAC
*
67727 AAATAAAATTAAATCAACAACTA
1 AAATAAAATGAAATCAA-AACTA
*
67750 AAAT-AAATGAAATTAAAACTA
1 AAATAAAATGAAATCAAAACTA
67771 TATAAAAATG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 5 0.26
22 10 0.53
23 4 0.21
ACGTcount: A:0.66, C:0.09, G:0.02, T:0.23
Consensus pattern (22 bp):
AAATAAAATGAAATCAAAACTA
Found at i:69093 original size:7 final size:7
Alignment explanation
Indices: 69078--69146 Score: 52
Period size: 8 Copynumber: 9.1 Consensus size: 7
69068 TTGGGTCTGT
69078 AATAATA
1 AATAATA
*
69085 AATAGTA
1 AATAATA
69092 AATAAT-
1 AATAATA
69098 AATAATA
1 AATAATA
69105 ATATAATA
1 A-ATAATA
69113 GTAA-AATAA
1 --AATAAT-A
69122 AATAATA
1 AATAATA
69129 TTAATAATA
1 --AATAATA
69138 ATATAATA
1 A-ATAATA
69146 A
1 A
69147 TATTATTATT
Statistics
Matches: 51, Mismatches: 2, Indels: 17
0.73 0.03 0.24
Matches are distributed among these distances:
6 6 0.12
7 16 0.31
8 19 0.37
9 9 0.18
10 1 0.02
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (7 bp):
AATAATA
Found at i:69164 original size:3 final size:3
Alignment explanation
Indices: 69077--69148 Score: 71
Period size: 3 Copynumber: 24.7 Consensus size: 3
69067 TTTGGGTCTG
* *
69077 TAA TAA TAAA TAG TAAA TAA TAA TAA TAA T-A TAA TAG TAA -AA TAA
1 TAA TAA T-AA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
69122 -AA TAA TAT TAA TAA TAA T-A TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
69149 TTATTATTTA
Statistics
Matches: 57, Mismatches: 6, Indels: 12
0.76 0.08 0.16
Matches are distributed among these distances:
2 8 0.14
3 44 0.77
4 5 0.09
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:69621 original size:122 final size:122
Alignment explanation
Indices: 69484--69930 Score: 472
Period size: 122 Copynumber: 3.6 Consensus size: 122
69474 GAATCAATCA
*
69484 AAAGGTTGAACAAGCTCTTCTCATTATGAACTTATTCTTCCTCTTCAGATAAGTTCTTCTCATTA
1 AAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATAAGTTCTTCTCATTA
69549 TGAACTTTCTCTGGAAAAATTGATGCTGATCTATCTCCTTTTATGATAGAGTCATGC
66 TGAACTTTCTCTGGAAAAATTGATGCTGATCTATCTCCTTTTATGATAGAGTCATGC
*
69606 AAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATAAGTTATTCTCATTA
1 AAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATAAGTTCTTCTCATTA
* * * * * *
69671 TGAATTTTCTCTGGAAAAGTTGATGTTGATCTATCTCCTTCTGTGATAGATTCATGC
66 TGAACTTTCTCTGGAAAAATTGATGCTGATCTATCTCCTTTTATGATAGAGTCATGC
* * * *
69728 AAAAGGTTGAACAAGGTGTGAACAAATTCTTCTCATTATGAATTTGTTCTTTCTTCTTCAGATGA
1 -AAAGGTTGAACAA-----G--C----TCTTCTCATTATGAACTTCTTC-TTCCTCTTCAGATAA
*** * *
69793 GTTCTTCTCATTATGAAC--TCTCTGG---AA---ATGCTGATCTAT-T-AAGTGATGAATTTGA
53 GTTCTTCTCATTATGAACTTTCTCTGGAAAAATTGATGCTGATCTATCTCCTTTTATG-A-TAGA
69848 G-CA---
116 GTCATGC
* * *
69851 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCATTCTTCAGATAAATTCTTCTCATT
1 AAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTC-CTCTTCAGATAAGTTCTTCTCATT
69916 ATGAACTTTCTCTGG
65 ATGAACTTTCTCTGG
69931 CAATGGTAAT
Statistics
Matches: 278, Mismatches: 29, Indels: 45
0.79 0.08 0.13
Matches are distributed among these distances:
110 3 0.01
111 48 0.17
113 7 0.03
117 1 0.00
122 127 0.46
123 13 0.05
125 2 0.01
126 4 0.01
127 14 0.05
128 1 0.00
130 2 0.01
133 7 0.03
134 20 0.07
135 29 0.10
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.40
Consensus pattern (122 bp):
AAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATAAGTTCTTCTCATTA
TGAACTTTCTCTGGAAAAATTGATGCTGATCTATCTCCTTTTATGATAGAGTCATGC
Found at i:71118 original size:18 final size:18
Alignment explanation
Indices: 71071--71118 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
71061 ATCCATTTAC
*
71071 AATATAAAAGAATAAATTG
1 AATATAAAA-AATAAATTA
* **
71090 AATTTCGAAAATAAATTA
1 AATATAAAAAATAAATTA
71108 AATATAAAAAA
1 AATATAAAAAA
71119 CATAAATTGA
Statistics
Matches: 22, Mismatches: 7, Indels: 1
0.73 0.23 0.03
Matches are distributed among these distances:
18 16 0.73
19 6 0.27
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.27
Consensus pattern (18 bp):
AATATAAAAAATAAATTA
Found at i:71143 original size:20 final size:19
Alignment explanation
Indices: 71081--71154 Score: 69
Period size: 20 Copynumber: 3.7 Consensus size: 19
71071 AATATAAAAG
*
71081 AATAAATTGAATTT-CGAA
1 AATAAATTGAATTTAAGAA
* * *
71099 AATAAATTAAATATAAAAA
1 AATAAATTGAATTTAAGAA
71118 ACATAAATTGAATTTAGAGAA
1 A-ATAAATTGAATTTA-AGAA
71139 AATAAACTTAGAATTT
1 AATAAA-TT-GAATTT
71155 TTTAATAAAT
Statistics
Matches: 44, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
18 12 0.27
19 3 0.07
20 17 0.39
21 6 0.14
22 6 0.14
ACGTcount: A:0.57, C:0.04, G:0.08, T:0.31
Consensus pattern (19 bp):
AATAAATTGAATTTAAGAA
Found at i:75050 original size:9 final size:9
Alignment explanation
Indices: 75027--75057 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
75017 AAAAAATAAT
75027 GAATGTAAA
1 GAATGTAAA
75036 -AATGTAAA
1 GAATGTAAA
75044 GAATGTAAA
1 GAATGTAAA
75053 GAATG
1 GAATG
75058 ATTGCCATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.38
9 13 0.62
ACGTcount: A:0.55, C:0.00, G:0.23, T:0.23
Consensus pattern (9 bp):
GAATGTAAA
Found at i:77629 original size:22 final size:22
Alignment explanation
Indices: 77594--77637 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
77584 AATATATTAC
*
77594 AAATAAAATTAAATCAACAACTA
1 AAATAAAATGAAATCAA-AACTA
*
77617 AAAT-AAATGAAATTAAAACTA
1 AAATAAAATGAAATCAAAACTA
77638 TATAAAAATG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 5 0.26
22 10 0.53
23 4 0.21
ACGTcount: A:0.66, C:0.09, G:0.02, T:0.23
Consensus pattern (22 bp):
AAATAAAATGAAATCAAAACTA
Found at i:78942 original size:20 final size:19
Alignment explanation
Indices: 78913--78999 Score: 94
Period size: 17 Copynumber: 4.7 Consensus size: 19
78903 ATAACTTAAT
78913 TAATAATAATAATAATAAA
1 TAATAATAATAATAATAAA
*
78932 TAGTAAATAATAATAAT-AA
1 TAAT-AATAATAATAATAAA
*
78951 TAATAAT-ATAATAGTTAAA
1 TAATAATAATAATA-ATAAA
*
78970 TAA-AATAATATTAAT-AA
1 TAATAATAATAATAATAAA
78987 TAAT-ATAATAATA
1 TAATAATAATAATA
79000 TTATTATTTA
Statistics
Matches: 57, Mismatches: 6, Indels: 12
0.76 0.08 0.16
Matches are distributed among these distances:
17 19 0.33
18 8 0.14
19 18 0.32
20 12 0.21
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.34
Consensus pattern (19 bp):
TAATAATAATAATAATAAA
Found at i:79002 original size:20 final size:19
Alignment explanation
Indices: 78909--79000 Score: 91
Period size: 20 Copynumber: 4.7 Consensus size: 19
78899 CATAATAACT
78909 TAAT-TAATAATAATAATAA
1 TAATATAATAAT-ATAATAA
*
78928 TAA-ATAGTAA-ATAATAA
1 TAATATAATAATATAATAA
*
78945 TAATAATAATAATATAATAGT
1 TAAT-ATAATAATATAATA-A
*
78966 TAAATAAAATAATATTAATAA
1 T-AATATAATAATA-TAATAA
78987 TAATATAATAATAT
1 TAATATAATAATAT
79001 TATTATTTAT
Statistics
Matches: 60, Mismatches: 6, Indels: 14
0.75 0.08 0.17
Matches are distributed among these distances:
17 10 0.17
19 15 0.25
20 17 0.28
21 10 0.17
22 8 0.13
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (19 bp):
TAATATAATAATATAATAA
Found at i:79015 original size:3 final size:3
Alignment explanation
Indices: 78913--78999 Score: 92
Period size: 3 Copynumber: 29.7 Consensus size: 3
78903 ATAACTTAAT
*
78913 TAA TAA TAA TAA TAA TAAA TAG TAAA TAA TAA TAA TAA TAA TAA T-A
1 TAA TAA TAA TAA TAA T-AA TAA T-AA TAA TAA TAA TAA TAA TAA TAA
* * *
78959 TAA TAG TTA -AA TAA -AA TAA TAT TAA TAA TAA T-A TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
79000 TTATTATTTA
Statistics
Matches: 70, Mismatches: 8, Indels: 12
0.78 0.09 0.13
Matches are distributed among these distances:
2 7 0.10
3 58 0.83
4 5 0.07
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:80650 original size:17 final size:18
Alignment explanation
Indices: 80617--80650 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
80607 TACTATGATA
*
80617 TTTAATCTCCAAGGAATC
1 TTTAATCTCCAACGAATC
80635 TTTAAT-TCCAACGAAT
1 TTTAATCTCCAACGAAT
80651 ATACTACAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (18 bp):
TTTAATCTCCAACGAATC
Found at i:80874 original size:58 final size:59
Alignment explanation
Indices: 80812--80922 Score: 163
Period size: 59 Copynumber: 1.9 Consensus size: 59
80802 CTTCCCCTTT
* *
80812 CATTTTAGCACACGAAGTGCCCTAT-TCAAAATTCATA-CAATTAGTATGATTTTGTTAC
1 CATTTTAGCACACAAAATGCCCTATGTCAAAATTCATATC-ATTAGTATGATTTTGTTAC
* *
80870 CATTTTAGCACATAAAATGCCCTATGTGAAAATTCATATCATTAGTATGATTT
1 CATTTTAGCACACAAAATGCCCTATGTCAAAATTCATATCATTAGTATGATTT
80923 CCTTATCTTT
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
58 22 0.47
59 24 0.51
60 1 0.02
ACGTcount: A:0.34, C:0.17, G:0.12, T:0.37
Consensus pattern (59 bp):
CATTTTAGCACACAAAATGCCCTATGTCAAAATTCATATCATTAGTATGATTTTGTTAC
Found at i:80938 original size:59 final size:58
Alignment explanation
Indices: 80786--81013 Score: 160
Period size: 59 Copynumber: 3.9 Consensus size: 58
80776 ATCTGGAAGA
* * * * ** *
80786 TCATACACTTAGTATGCTTCCCCTT-TCATTTTAGCACACGAAGTGCCCTATTCAAAAT
1 TCATACAATTAGTATGATT-TCCTTACCATTTTAGCACATAAAATGCCCTATTCAAAAT
** *
80844 TCATACAATTAGTATGATTTTGTTACCATTTTAGCACATAAAATGCCCTATGTGAAAAT
1 TCATACAATTAGTATGATTTCCTTACCATTTTAGCACATAAAATGCCCTAT-TCAAAAT
* * * * ** **
80903 TCATATC-ATTAGTATGATTTCCTTATC-TTTGTAGCACCCT-TAGTGCTTTATCTGGAAAT
1 TCATA-CAATTAGTATGATTTCCTTACCATTT-TAGCA-CATAAAATGCCCTAT-TCAAAAT
* * * *
80962 CCATACACTCAGTGTGA-TTCCATTACCATTTTAGCACATAAAATGCCCTATT
1 TCATACAATTAGTATGATTTCC-TTACCATTTTAGCACATAAAATGCCCTATT
81014 TGGAAATCAT
Statistics
Matches: 131, Mismatches: 30, Indels: 18
0.73 0.17 0.10
Matches are distributed among these distances:
57 2 0.02
58 50 0.38
59 73 0.56
60 6 0.05
ACGTcount: A:0.29, C:0.22, G:0.11, T:0.37
Consensus pattern (58 bp):
TCATACAATTAGTATGATTTCCTTACCATTTTAGCACATAAAATGCCCTATTCAAAAT
Found at i:81021 original size:59 final size:59
Alignment explanation
Indices: 80854--81114 Score: 182
Period size: 59 Copynumber: 4.5 Consensus size: 59
80844 TCATACAATT
** * * * *
80854 AGTATGATTTTGTTACCATTTTAGCACATAAAATGCCCTATGTGAAAATTCATATCATT
1 AGTATGATTTCCTTACCATTTTAGCACATAAAATGCCCTATCTGGAAATCCATATCATC
* * * * **
80913 AGTATGATTTCCTTATC-TTTGTAGCACCCT-TAGTGCTTTATCTGGAAATCCATA-CACTC
1 AGTATGATTTCCTTACCATTT-TAGCA-CATAAAATGCCCTATCTGGAAATCCATATCA-TC
* * **
80972 AGTGTGA-TTCCATTACCATTTTAGCACATAAAATGCCCTATTTGGAAAT-CATATTTTC
1 AGTATGATTTCC-TTACCATTTTAGCACATAAAATGCCCTATCTGGAAATCCATATCATC
* * * * * *
81030 AATATGATTTCCTTATCA-TTTAGCACACT-CAGTGCTCC-ATATGGAAATCTATA-CACTC
1 AGTATGATTTCCTTACCATTTTAGCACA-TAAAATGC-CCTATCTGGAAATCCATATCA-TC
*
81088 AGTATGATTTCCTTATCA-TTTAGCACA
1 AGTATGATTTCCTTACCATTTTAGCACA
81115 CTCAGTAATC
Statistics
Matches: 158, Mismatches: 32, Indels: 25
0.73 0.15 0.12
Matches are distributed among these distances:
57 22 0.14
58 61 0.39
59 70 0.44
60 5 0.03
ACGTcount: A:0.30, C:0.20, G:0.12, T:0.38
Consensus pattern (59 bp):
AGTATGATTTCCTTACCATTTTAGCACATAAAATGCCCTATCTGGAAATCCATATCATC
Found at i:81096 original size:116 final size:118
Alignment explanation
Indices: 80840--81114 Score: 335
Period size: 118 Copynumber: 2.4 Consensus size: 118
80830 GCCCTATTCA
* * * **
80840 AAATTCATACAATTAGTATGATTTTGTTACCATTTTAGCACATAAAATGCCCTATGTGAAAATTC
1 AAATCCATACACTCAGTATGATTTCCTTACCATTTTAGCACATAAAATGCCCTATGTGAAAATTC
* * * * ** *
80905 ATATCATTAGTATGATTTCCTTATCTTTGTAGCACCCTTAGTGCTTTATCTGG
66 ATATCATTAATATGATTTCCTTATCATTGTAGCACACTCAGTGCTCCATATGG
* * *
80958 AAATCCATACACTCAGTGTGA-TTCCATTACCATTTTAGCACATAAAATGCCCTATTTGGAAA-T
1 AAATCCATACACTCAGTATGATTTCC-TTACCATTTTAGCACATAAAATGCCCTATGTGAAAATT
*
81021 CATAT-TTTCAATATGATTTCCTTATCATT-TAGCACACTCAGTGCTCCATATGG
65 CATATCATT-AATATGATTTCCTTATCATTGTAGCACACTCAGTGCTCCATATGG
* *
81074 AAATCTATACACTCAGTATGATTTCCTTATCA-TTTAGCACA
1 AAATCCATACACTCAGTATGATTTCCTTACCATTTTAGCACA
81115 CTCAGTAATC
Statistics
Matches: 135, Mismatches: 19, Indels: 9
0.83 0.12 0.06
Matches are distributed among these distances:
115 9 0.07
116 45 0.33
117 30 0.22
118 51 0.38
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (118 bp):
AAATCCATACACTCAGTATGATTTCCTTACCATTTTAGCACATAAAATGCCCTATGTGAAAATTC
ATATCATTAATATGATTTCCTTATCATTGTAGCACACTCAGTGCTCCATATGG
Found at i:81101 original size:58 final size:57
Alignment explanation
Indices: 80743--81120 Score: 200
Period size: 58 Copynumber: 6.5 Consensus size: 57
80733 AATTCATGTA
* * * * * *
80743 ATTTCCTTTTAATATTAGCACTCTCAGTGCTCTATCTGGAAGATCATACACTTAGTATG
1 ATTTCCTTATCAT-TTAGCACACTCAGTGCTCCATATGGAA-ATCATACACTCAGTATG
* * ** ** * *
80802 CTTCCCCTT-TCATTTTAGCACACGAAGTGC-CC-TATTCAAAATTCATACAATTAGTATG
1 ATT-TCCTTATCA-TTTAGCACACTCAGTGCTCCATA-TGGAAA-TCATACACTCAGTATG
** * * * *
80860 ATTTTGTTACCATTTTAGCACA-TAAAATGC-CC-TATGTGAAAATTCATATCA-TTAGTATG
1 ATTTCCTTATCA-TTTAGCACACT-CAGTGCTCCATATG-G-AAA-TCATA-CACTCAGTATG
* * * ** * *
80919 ATTTCCTTATCTTTGTAGCACCCTTAGTGCTTTATCTGGAAATCCATACACTCAGTGTG
1 ATTTCCTTATCATT-TAGCACACTCAGTGCTCCATATGGAAAT-CATACACTCAGTATG
* * * * *** *
80978 A-TTCCATTACCATTTTAGCACA-TAAAATGC-CCTATTTGGAAATCATATTTTCAATATG
1 ATTTCC-TTATCA-TTTAGCACACT-CAGTGCTCC-ATATGGAAATCATACACTCAGTATG
81036 ATTTCCTTATCATTTAGCACACTCAGTGCTCCATATGGAAATCTATACACTCAGTATG
1 ATTTCCTTATCATTTAGCACACTCAGTGCTCCATATGGAAATC-ATACACTCAGTATG
81094 ATTTCCTTATCATTTAGCACACTCAGT
1 ATTTCCTTATCATTTAGCACACTCAGT
81121 AATCACTATA
Statistics
Matches: 243, Mismatches: 53, Indels: 47
0.71 0.15 0.14
Matches are distributed among these distances:
57 28 0.12
58 108 0.44
59 93 0.38
60 11 0.05
61 3 0.01
ACGTcount: A:0.29, C:0.22, G:0.12, T:0.38
Consensus pattern (57 bp):
ATTTCCTTATCATTTAGCACACTCAGTGCTCCATATGGAAATCATACACTCAGTATG
Found at i:87531 original size:17 final size:18
Alignment explanation
Indices: 87498--87531 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
87488 TATTCTGATA
*
87498 TTTAATCTCCAAGGAATC
1 TTTAATCTCCAACGAATC
87516 TTTAAT-TCCAACGAAT
1 TTTAATCTCCAACGAAT
87532 ATACTACAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (18 bp):
TTTAATCTCCAACGAATC
Found at i:87757 original size:58 final size:59
Alignment explanation
Indices: 87693--87803 Score: 154
Period size: 58 Copynumber: 1.9 Consensus size: 59
87683 CTTCCCATTT
* *
87693 CATTTTAGCACACGAAGTGCCCTAT-TCAAAATTCATAC-CATTAGTATGATTTTGTTAC
1 CATTTTAGCACACAAAATGCCCTATGTCAAAATTCAT-CTCATTAGTATGATTTTGTTAC
* * *
87751 CATTTTAGCACATAAAATGCCCTATGTGAAGATTCATCTCATTAGTATGATTT
1 CATTTTAGCACACAAAATGCCCTATGTCAAAATTCATCTCATTAGTATGATTT
87804 CTTTATCTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
58 23 0.50
59 23 0.50
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (59 bp):
CATTTTAGCACACAAAATGCCCTATGTCAAAATTCATCTCATTAGTATGATTTTGTTAC
Found at i:99162 original size:20 final size:20
Alignment explanation
Indices: 99137--99184 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
99127 CAGCTCACGT
99137 CTAACTCATTCACCCTATAA
1 CTAACTCATTCACCCTATAA
99157 CTAACTCATTCACCCTATAA
1 CTAACTCATTCACCCTATAA
99177 CTAACTCA
1 CTAACTCA
99185 AACATGAAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.35, C:0.35, G:0.00, T:0.29
Consensus pattern (20 bp):
CTAACTCATTCACCCTATAA
Found at i:100850 original size:34 final size:34
Alignment explanation
Indices: 100812--100936 Score: 133
Period size: 34 Copynumber: 3.7 Consensus size: 34
100802 ATATTCAAAT
*
100812 AATAAAAAGTTAGAGGGTTAGTTCAAACAATAAA
1 AATAAAAAGTTAGAGGGTTAGTTCAAATAATAAA
* * * ** *
100846 AATAAATAGTTAAAGAGTTAGTTTTAGTAATAAA
1 AATAAAAAGTTAGAGGGTTAGTTCAAATAATAAA
** *
100880 AATAAAGTGTTAGAGGGTTAGTACAAATAATAAA
1 AATAAAAAGTTAGAGGGTTAGTTCAAATAATAAA
* * *
100914 ATTAACAAGTTAGCGGGTTAGTT
1 AATAAAAAGTTAGAGGGTTAGTT
100937 TTGATTTTAC
Statistics
Matches: 70, Mismatches: 21, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
34 70 1.00
ACGTcount: A:0.47, C:0.04, G:0.19, T:0.30
Consensus pattern (34 bp):
AATAAAAAGTTAGAGGGTTAGTTCAAATAATAAA
Found at i:106903 original size:31 final size:31
Alignment explanation
Indices: 106860--106922 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
106850 TTTGACTTAA
* *
106860 GGAATATGATAAGGTTGTGGTATCTTGGTTT
1 GGAAGATGATAAGGTTGAGGTATCTTGGTTT
* *
106891 GGAAGATGATAAGGTTGAGGTGTCTTTGTTT
1 GGAAGATGATAAGGTTGAGGTATCTTGGTTT
106922 G
1 G
106923 ATGGTAATTA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.22, C:0.03, G:0.35, T:0.40
Consensus pattern (31 bp):
GGAAGATGATAAGGTTGAGGTATCTTGGTTT
Found at i:108646 original size:19 final size:20
Alignment explanation
Indices: 108611--108654 Score: 81
Period size: 19 Copynumber: 2.2 Consensus size: 20
108601 GAAGTATCAT
108611 TACCATAGGAGGGGTAACGA
1 TACCATAGGAGGGGTAACGA
108631 TACCATAGGA-GGGTAACGA
1 TACCATAGGAGGGGTAACGA
108650 TACCA
1 TACCA
108655 GTTAGTATGA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 14 0.58
20 10 0.42
ACGTcount: A:0.36, C:0.18, G:0.30, T:0.16
Consensus pattern (20 bp):
TACCATAGGAGGGGTAACGA
Found at i:109034 original size:54 final size:54
Alignment explanation
Indices: 108952--109356 Score: 395
Period size: 54 Copynumber: 7.5 Consensus size: 54
108942 GTTTAATGTA
* * * * *
108952 TAAGTGTTCAACCCACGGAATTCATAATAAGTTTATTAAAAATCGTATCGGCAC
1 TAAGTGTGCAACCCACAGAATTCATAATAAGTTTATGAAAGACCGTATCGGCAC
* * * * *
109006 TAAGTGTGCAACCCACAAAATTCATAATAAGTTTTTGAATGACCATATTGGCAC
1 TAAGTGTGCAACCCACAGAATTCATAATAAGTTTATGAAAGACCGTATCGGCAC
* * * * * * *
109060 TAAATGTGTAACCTACGGAATTCATAATAAGTTTATGAACGTCCGTATCGACAC
1 TAAGTGTGCAACCCACAGAATTCATAATAAGTTTATGAAAGACCGTATCGGCAC
* ** * * *
109114 TAAGTGTTCAACCCACTTAATTCATAATAAGTTTGTGAACGACCGTATCGACAC
1 TAAGTGTGCAACCCACAGAATTCATAATAAGTTTATGAAAGACCGTATCGGCAC
* * ** * **
109168 TAAGTGTACAA-CCAAAGAATTCATAATAAACTTATGAACGACTATATCGGCA-
1 TAAGTGTGCAACCCACAGAATTCATAATAAGTTTATGAAAGACCGTATCGGCAC
* *
109220 TGAAGTGTGTAACCCACAGAATTCATAATAAGTTTATGAAAGACCGTATTGGCAC
1 T-AAGTGTGCAACCCACAGAATTCATAATAAGTTTATGAAAGACCGTATCGGCAC
* * * *
109275 TAAGTGTACAA-CCATCATAATTCATAATAAGTTTATGAACA-ACCGAATTGGCAC
1 TAAGTGTGCAACCCA-CAGAATTCATAATAAGTTTATGAA-AGACCGTATCGGCAC
* * **
109329 TATGTGTGCAATCCATGGAATTCATAAT
1 TAAGTGTGCAACCCACAGAATTCATAAT
109357 GTGTTTGTGA
Statistics
Matches: 288, Mismatches: 57, Indels: 12
0.81 0.16 0.03
Matches are distributed among these distances:
52 1 0.00
53 43 0.15
54 239 0.83
55 5 0.02
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.29
Consensus pattern (54 bp):
TAAGTGTGCAACCCACAGAATTCATAATAAGTTTATGAAAGACCGTATCGGCAC
Found at i:110651 original size:15 final size:15
Alignment explanation
Indices: 110623--110655 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
110613 ACAAGTAAGG
110623 AAAAAGTAAAAAAAT
1 AAAAAGTAAAAAAAT
110638 AAAAA-TAAATAAAAT
1 AAAAAGTAAA-AAAAT
110653 AAA
1 AAA
110656 GCTTTTATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 4 0.24
15 13 0.76
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (15 bp):
AAAAAGTAAAAAAAT
Found at i:112169 original size:22 final size:20
Alignment explanation
Indices: 112128--112171 Score: 61
Period size: 22 Copynumber: 2.1 Consensus size: 20
112118 CCAAATATTA
*
112128 GTATCGATACCTCTACTATG
1 GTATCGATACCTATACTATG
112148 GTATCGATACTTCTATACTATG
1 GTATCGATAC--CTATACTATG
112170 GT
1 GT
112172 TGAAAATACT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 10 0.48
22 11 0.52
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.39
Consensus pattern (20 bp):
GTATCGATACCTATACTATG
Found at i:118606 original size:111 final size:111
Alignment explanation
Indices: 118412--118620 Score: 303
Period size: 111 Copynumber: 1.9 Consensus size: 111
118402 ACCAAAGTGC
* * * * * * * *
118412 CGAAATGGTCATTCACCTTTTATGAATACCATAGATGGCACCTTTTATGTCGAAAATGCACCGTC
1 CGAAATGGTAATTCACCTTTCATGAAAACCATAGACGACACCTTTTATGCCGAAAATGCACCATA
*
118477 ATGCATTAAACAAAATCGAATGATTACCTTCATACATGAAGTATGT
66 ATGCATTAAACAAAATCGAACGATTACCTTCATACATGAAGTATGT
*
118523 CGAAATGGTAATTCACCTTTCATGAAAACCAT-GAACGACACCTTTTATGCCGAAAATGCACTAT
1 CGAAATGGTAATTCACCTTTCATGAAAACCATAG-ACGACACCTTTTATGCCGAAAATGCACCAT
*
118587 AATGCATTAAACAAAATCGAACGATTACTTTCAT
65 AATGCATTAAACAAAATCGAACGATTACCTTCAT
118621 TAGTCGCACC
Statistics
Matches: 86, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
110 1 0.01
111 85 0.99
ACGTcount: A:0.36, C:0.21, G:0.14, T:0.29
Consensus pattern (111 bp):
CGAAATGGTAATTCACCTTTCATGAAAACCATAGACGACACCTTTTATGCCGAAAATGCACCATA
ATGCATTAAACAAAATCGAACGATTACCTTCATACATGAAGTATGT
Done.