genome.fa.s7378.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007378.1 Hibiscus syriacus cultivar Beakdansim tig00019814_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  157030

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1286--1445	79	2.0	80	95	1	286	45	11	8	34	1.72
5644--5854	29	7.4	27	80	8	188	28	3	18	49	1.65
5644--5859	57	3.8	57	83	6	242	29	4	17	48	1.66
6569--6636	24	2.8	24	84	0	91	27	10	19	42	1.83
13184--13401	29	7.6	28	86	4	256	29	5	17	47	1.69
13184--13401	58	3.8	58	88	4	282	29	5	17	47	1.69
13184--13401	86	2.5	86	84	2	267	29	5	17	47	1.69
14113--14185	24	3.0	24	76	4	76	27	15	19	38	1.91
14201--14225	2	12.5	2	100	0	50	48	0	0	52	1.00
20707--20917	56	3.7	58	85	5	243	29	3	17	48	1.65
20720--20918	29	7.0	29	80	7	192	31	4	15	49	1.63
21634--21702	24	2.9	24	82	2	86	27	13	20	39	1.89
22865--22912	24	1.9	26	87	8	73	33	8	4	54	1.50
28263--28479	29	7.6	29	83	4	233	28	5	17	47	1.70
28262--28479	57	3.8	58	85	4	264	28	5	18	47	1.70
28263--28479	86	2.5	85	82	5	249	28	5	17	47	1.70
28516--28545	10	3.0	10	100	0	60	20	30	20	30	1.97
29200--29272	24	3.0	24	81	0	92	27	13	20	38	1.90
30612--30647	15	2.4	15	95	0	63	22	16	25	36	1.94
41202--41270	10	6.7	10	80	11	68	18	30	27	23	1.98
41198--41261	19	3.3	19	80	10	67	20	31	26	21	1.98
43555--43604	24	2.1	24	92	0	82	22	10	16	52	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43565--43633	12	5.8	12	76	6	50	20	7	17	55	1.65
43555--43634	24	3.3	24	82	0	79	22	7	16	53	1.67
45132--45156	2	12.5	2	100	0	50	52	0	0	48	1.00
45319--45388	12	5.8	12	76	6	70	51	18	14	15	1.77
45317--45408	48	1.9	48	88	0	139	48	17	14	19	1.80
45317--45423	48	2.2	48	85	3	135	47	17	14	19	1.82
45317--45425	24	4.5	25	76	6	100	47	17	15	19	1.82
46544--46584	18	2.3	18	86	0	55	29	17	2	51	1.58
47767--47830	15	4.3	15	90	7	96	21	25	39	14	1.91
47748--47830	8	10.5	8	81	17	95	22	24	37	15	1.93
47796--47852	18	3.0	18	89	7	78	14	22	45	17	1.84
47804--47865	31	2.0	31	93	0	106	14	20	46	17	1.83
47775--47835	13	4.3	13	82	15	68	19	24	40	14	1.89
47830--47865	13	2.8	13	86	0	54	13	19	47	19	1.83
49988--50045	23	2.5	23	82	2	71	51	18	12	17	1.75
51178--51218	18	2.3	18	86	0	55	29	17	2	51	1.58
52392--52475	8	10.5	8	77	19	79	23	23	35	16	1.95
52435--52480	13	3.3	13	84	9	56	17	23	41	17	1.90
52441--52497	18	3.0	18	87	7	69	14	22	43	19	1.86
52449--52510	31	2.0	31	90	6	99	14	20	45	19	1.85
52475--52510	13	2.8	13	86	0	54	13	19	47	19	1.83
59690--59794	29	3.6	29	94	0	183	34	3	22	39	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81649--81809	28	5.7	28	85	5	193	38	23	4	32	1.76
81648--81810	57	2.9	55	81	8	202	38	23	4	33	1.77
81822--81872	9	5.6	9	80	13	50	25	31	29	13	1.94
81825--81872	19	2.6	19	81	15	64	27	33	27	12	1.92
85876--85915	20	2.0	20	100	0	80	45	10	20	25	1.81
89076--89312	28	8.4	28	83	6	232	36	20	5	36	1.77
100929--101069	64	2.2	65	84	1	176	29	16	24	29	1.96
101100--101137	20	1.9	20	94	0	67	18	15	34	31	1.92
103777--103833	24	2.4	24	87	0	87	35	21	22	21	1.96
108776--108955	64	2.8	65	79	4	202	31	16	21	30	1.95
110154--110180	13	2.1	13	100	0	54	48	22	7	22	1.75
112706--112743	13	2.9	13	88	0	58	18	44	23	13	1.85
119877--119915	18	2.2	18	90	4	62	20	46	23	10	1.81
119923--120019	29	3.4	29	89	2	142	27	6	26	39	1.80
121285--121324	21	1.9	21	100	0	80	25	5	7	62	1.42
121286--121336	21	2.4	21	90	0	75	27	5	9	56	1.54
124413--124595	29	6.3	29	78	10	171	33	2	19	44	1.65
132891--132948	30	1.9	31	85	3	82	39	1	20	37	1.63
143811--143864	24	2.2	25	83	9	76	20	11	16	51	1.74

Tables:   1

The End!